Wall clock time and date at job start Mon Mar 30 2020 02:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36887 * 126.39910 * 2 1 4 4 C 1.34672 * 106.81700 * 179.97438 * 3 2 1 5 5 N 1.34127 * 108.01948 * 0.22851 * 4 3 2 6 6 C 1.30502 * 109.25683 * 359.61488 * 5 4 3 7 7 C 1.50700 * 125.64425 * 180.14781 * 6 5 4 8 8 C 1.53001 * 109.47027 * 270.27259 * 7 6 5 9 9 N 1.46502 * 109.47031 * 180.02562 * 8 7 6 10 10 C 1.36935 * 120.00290 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99657 * 359.97438 * 10 9 8 12 12 C 1.38813 * 120.00169 * 179.97438 * 10 9 8 13 13 N 1.31615 * 120.00176 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99831 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47399 * 60.00066 * 14 12 10 16 16 H 1.48497 * 109.47016 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47057 * 299.99882 * 14 12 10 18 18 H 1.09003 * 109.47221 * 90.02476 * 1 2 3 19 19 H 1.09003 * 109.47097 * 210.02578 * 1 2 3 20 20 H 1.09001 * 109.46668 * 330.02549 * 1 2 3 21 21 H 1.07997 * 126.58796 * 359.97438 * 3 2 1 22 22 H 1.08002 * 125.98510 * 179.97438 * 4 3 2 23 23 H 1.08994 * 109.47481 * 30.27445 * 7 6 5 24 24 H 1.09006 * 109.46847 * 150.28064 * 7 6 5 25 25 H 1.08999 * 109.47577 * 300.00557 * 8 7 6 26 26 H 1.08998 * 109.46940 * 60.00867 * 8 7 6 27 27 H 0.96998 * 119.99840 * 359.97438 * 9 8 7 28 28 H 0.96999 * 120.00035 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6504 0.0006 5 7 3.5095 -0.6903 -0.0042 6 6 2.2663 -1.0870 0.0006 7 6 1.8019 -2.5206 0.0008 8 6 1.6451 -3.0062 -1.4416 9 7 1.1931 -4.3997 -1.4414 10 6 0.9828 -5.0515 -2.6271 11 1 1.1498 -4.5381 -3.5626 12 6 0.5549 -6.3721 -2.6269 13 7 0.3519 -6.9979 -1.4870 14 14 0.2688 -7.2614 -4.2445 15 1 1.5336 -7.2943 -5.0219 16 1 -0.1820 -8.6500 -3.9729 17 1 -0.7733 -6.5468 -5.0247 18 1 -0.3634 -0.0004 -1.0277 19 1 -0.3633 -0.8898 0.5142 20 1 -0.3633 0.8902 0.5135 21 1 1.9613 2.1345 -0.0004 22 1 4.4369 1.2611 0.0003 23 1 2.5363 -3.1404 0.5150 24 1 0.8430 -2.5918 0.5143 25 1 0.9107 -2.3864 -1.9559 26 1 2.6039 -2.9350 -1.9551 27 1 1.0434 -4.8609 -0.6013 28 1 0.0526 -7.9205 -1.4869 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045134569.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:19 Heat of formation + Delta-G solvation = 46.425706 kcal Electronic energy + Delta-G solvation = -11782.781669 eV Core-core repulsion = 9641.216578 eV Total energy + Delta-G solvation = -2141.565091 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.99063 -37.09635 -34.90039 -34.21864 -31.84173 -28.91591 -27.73729 -25.81166 -23.38166 -22.25763 -20.74659 -19.19620 -17.83536 -16.90996 -16.42559 -15.95395 -15.40563 -15.24920 -14.80299 -14.43245 -13.82387 -13.81018 -13.39196 -12.91448 -12.85594 -12.64864 -12.38753 -12.14279 -11.83359 -10.96955 -10.91183 -10.54105 -9.28016 -9.05834 -7.96895 -5.27515 1.11181 1.47681 1.51218 1.57447 1.95204 2.18632 2.55679 3.36231 3.43148 3.88752 3.99040 4.22885 4.28166 4.29855 4.42436 4.55975 4.65922 4.70725 4.78329 5.12030 5.13952 5.41096 5.46409 5.89274 6.23002 6.27597 7.20351 7.31406 8.02311 8.29279 9.26184 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.070296 B = 0.006921 C = 0.006811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.220662 B = 4044.826508 C = 4109.747626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.457 5.457 3 C -0.047 4.047 4 C -0.061 4.061 5 N -0.533 5.533 6 C 0.196 3.804 7 C -0.029 4.029 8 C 0.170 3.830 9 N -0.743 5.743 10 C -0.254 4.254 11 H 0.072 0.928 12 C -0.070 4.070 13 N -0.967 5.967 14 Si 0.976 3.024 15 H -0.280 1.280 16 H -0.292 1.292 17 H -0.275 1.275 18 H 0.082 0.918 19 H 0.089 0.911 20 H 0.118 0.882 21 H 0.216 0.784 22 H 0.188 0.812 23 H 0.082 0.918 24 H 0.094 0.906 25 H 0.021 0.979 26 H 0.008 0.992 27 H 0.377 0.623 28 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 16.712 3.667 17.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.139 5.139 3 C -0.180 4.180 4 C -0.209 4.209 5 N -0.253 5.253 6 C -0.067 4.067 7 C -0.068 4.068 8 C 0.043 3.957 9 N -0.386 5.386 10 C -0.386 4.386 11 H 0.090 0.910 12 C -0.262 4.262 13 N -0.617 5.617 14 Si 0.804 3.196 15 H -0.206 1.206 16 H -0.218 1.218 17 H -0.201 1.201 18 H 0.101 0.899 19 H 0.108 0.892 20 H 0.136 0.864 21 H 0.233 0.767 22 H 0.205 0.795 23 H 0.101 0.899 24 H 0.112 0.888 25 H 0.039 0.961 26 H 0.026 0.974 27 H 0.210 0.790 28 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.709 16.199 3.484 16.585 hybrid contribution -0.680 -0.339 -0.483 0.900 sum -1.389 15.860 3.001 16.202 Atomic orbital electron populations 1.22363 0.74472 1.06277 1.04740 1.45568 1.09031 1.06090 1.53172 1.23314 0.90575 0.93748 1.10398 1.22802 0.98359 0.90479 1.09262 1.70190 1.19914 1.14004 1.21201 1.23015 0.86046 0.91228 1.06431 1.19951 1.02232 0.86894 0.97736 1.20519 0.95902 0.85127 0.94195 1.42476 1.81075 1.09451 1.05622 1.19561 1.37170 0.94798 0.87027 0.90960 1.25583 1.02596 0.97717 1.00348 1.69800 1.53945 1.11847 1.26087 0.85180 0.78084 0.77290 0.78999 1.20598 1.21765 1.20089 0.89935 0.89232 0.86352 0.76737 0.79526 0.89903 0.88759 0.96059 0.97416 0.79037 0.93745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.06 10.97 127.77 1.40 2.47 15 2 N -0.46 -11.56 3.15 -537.60 -1.69 -13.26 15 3 C -0.05 -1.03 11.58 83.09 0.96 -0.07 15 4 C -0.06 -1.70 11.87 83.52 0.99 -0.70 15 5 N -0.53 -19.27 11.25 -188.13 -2.12 -21.39 15 6 C 0.20 6.52 7.16 138.13 0.99 7.51 15 7 C -0.03 -1.02 5.64 29.85 0.17 -0.85 15 8 C 0.17 7.33 6.24 86.38 0.54 7.87 15 9 N -0.74 -39.02 5.60 -343.45 -1.92 -40.94 15 10 C -0.25 -14.59 9.99 84.03 0.84 -13.75 15 11 H 0.07 4.02 7.83 -2.91 -0.02 4.00 15 12 C -0.07 -4.05 5.50 84.86 0.47 -3.58 15 13 N -0.97 -59.30 13.06 21.65 0.28 -59.02 15 14 Si 0.98 46.39 29.55 68.60 2.03 48.41 15 15 H -0.28 -12.95 7.11 99.48 0.71 -12.24 15 16 H -0.29 -13.80 7.11 99.48 0.71 -13.10 15 17 H -0.28 -12.47 7.11 99.48 0.71 -11.77 15 18 H 0.08 1.37 8.14 -2.39 -0.02 1.35 15 19 H 0.09 1.56 7.05 -2.39 -0.02 1.54 15 20 H 0.12 1.16 8.14 -2.39 -0.02 1.14 15 21 H 0.22 2.58 8.06 -2.91 -0.02 2.55 15 22 H 0.19 3.99 8.06 -2.91 -0.02 3.97 15 23 H 0.08 3.10 8.14 -2.39 -0.02 3.08 15 24 H 0.09 2.94 7.07 -2.38 -0.02 2.92 15 25 H 0.02 0.90 8.14 -2.39 -0.02 0.88 15 26 H 0.01 0.37 8.14 -2.39 -0.02 0.35 15 27 H 0.38 20.57 7.67 -92.71 -0.71 19.86 15 28 H 0.25 15.02 8.31 -92.71 -0.77 14.25 15 Total: -1.00 -71.89 247.63 3.37 -68.52 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.44 Total: 18.79 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 6.36 Total: -1.11 kcal Atomic # 7 Polarization: -129.16 SS G_CDS: -5.45 Total: -134.61 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -71.89 3.37 -68.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045134569.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.942 kcal (2) G-P(sol) polarization free energy of solvation -71.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds