Wall clock time and date at job start Mon Mar 30 2020 02:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36884 * 126.39816 * 2 1 4 4 C 1.34668 * 106.81452 * 180.25755 * 3 2 1 5 5 N 1.34121 * 108.02159 * 359.74130 * 4 3 2 6 6 C 1.30502 * 109.26042 * 0.02562 * 5 4 3 7 7 C 1.50697 * 125.65221 * 179.97438 * 6 5 4 8 8 N 1.46905 * 109.47066 * 90.02669 * 7 6 5 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.46943 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00162 * 359.97438 * 10 9 8 12 12 C 1.37883 * 120.00023 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99982 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99630 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46926 * 90.00445 * 14 12 10 16 16 H 1.48506 * 109.46987 * 209.99731 * 14 12 10 17 17 H 1.48494 * 109.47527 * 330.00217 * 14 12 10 18 18 H 1.08999 * 109.47176 * 270.18557 * 1 2 3 19 19 H 1.09001 * 109.46961 * 30.18549 * 1 2 3 20 20 H 1.08997 * 109.47316 * 150.18946 * 1 2 3 21 21 H 1.07998 * 126.58948 * 359.97438 * 3 2 1 22 22 H 1.08003 * 125.98696 * 179.72867 * 4 3 2 23 23 H 1.09001 * 109.47558 * 330.02832 * 7 6 5 24 24 H 1.08998 * 109.47216 * 210.02495 * 7 6 5 25 25 H 1.00901 * 110.99869 * 56.04737 * 8 7 6 26 26 H 1.09004 * 109.47031 * 299.99620 * 9 8 7 27 27 H 1.08995 * 109.47111 * 59.99900 * 9 8 7 28 28 H 0.97002 * 119.99560 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6504 -0.0058 5 7 3.5095 -0.6903 -0.0035 6 6 2.2663 -1.0870 0.0030 7 6 1.8018 -2.5206 0.0069 8 7 1.6569 -2.9846 1.3932 9 6 1.2050 -4.3817 1.4362 10 6 1.0676 -4.8213 2.8711 11 1 1.2937 -4.1319 3.6711 12 6 0.6541 -6.1039 3.1626 13 7 0.5347 -6.4876 4.4149 14 14 0.2637 -7.2965 1.7789 15 1 1.4925 -8.0431 1.4075 16 1 -0.7794 -8.2528 2.2293 17 1 -0.2323 -6.5419 0.6001 18 1 -0.3633 0.0033 1.0276 19 1 -0.3633 0.8883 -0.5167 20 1 -0.3634 -0.8916 -0.5109 21 1 1.9613 2.1345 -0.0004 22 1 4.4369 1.2611 -0.0115 23 1 2.5342 -3.1413 -0.5093 24 1 0.8409 -2.5926 -0.5026 25 1 1.0316 -2.3859 1.9114 26 1 0.2400 -4.4670 0.9365 27 1 1.9336 -5.0150 0.9300 28 1 0.2442 -7.3901 4.6199 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049856663.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:02 Heat of formation + Delta-G solvation = 65.947063 kcal Electronic energy + Delta-G solvation = -11818.542808 eV Core-core repulsion = 9677.824227 eV Total energy + Delta-G solvation = -2140.718581 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.86879 -35.60213 -33.85871 -32.50537 -30.12677 -27.55261 -26.82368 -24.30395 -21.24917 -21.14222 -19.64004 -17.13566 -16.58945 -15.66228 -15.14181 -14.59547 -13.94499 -13.74723 -13.41264 -12.96395 -12.77943 -12.68150 -12.39203 -11.75626 -11.54781 -10.68574 -10.61570 -9.91535 -9.71246 -9.44412 -9.34208 -8.61227 -8.24203 -7.55781 -6.07694 -4.06390 2.17664 2.89762 3.27939 3.34537 3.35728 3.37089 4.39828 4.63971 4.70012 4.91077 5.02975 5.22334 5.26064 5.33540 5.47803 5.59212 5.85812 6.05576 6.41031 6.68304 6.92027 6.93706 7.29736 7.53716 7.80426 8.19447 8.36684 8.60567 9.00334 9.53155 11.05523 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.063233 B = 0.007490 C = 0.007428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.703875 B = 3737.231942 C = 3768.705796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.461 5.461 3 C -0.069 4.069 4 C -0.030 4.030 5 N -0.478 5.478 6 C 0.224 3.776 7 C 0.140 3.860 8 N -0.669 5.669 9 C 0.165 3.835 10 C -0.517 4.517 11 H 0.079 0.921 12 C 0.069 3.931 13 N -0.899 5.899 14 Si 0.879 3.121 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.268 1.268 18 H 0.079 0.921 19 H 0.083 0.917 20 H 0.086 0.914 21 H 0.170 0.830 22 H 0.167 0.833 23 H 0.097 0.903 24 H 0.034 0.966 25 H 0.334 0.666 26 H -0.014 1.014 27 H 0.027 0.973 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.014 12.843 -10.813 16.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.144 5.144 3 C -0.202 4.202 4 C -0.179 4.179 5 N -0.197 5.197 6 C -0.039 4.039 7 C 0.009 3.991 8 N -0.301 5.301 9 C 0.038 3.962 10 C -0.556 4.556 11 H 0.097 0.903 12 C -0.133 4.133 13 N -0.538 5.538 14 Si 0.706 3.294 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.193 1.193 18 H 0.098 0.902 19 H 0.102 0.898 20 H 0.105 0.895 21 H 0.188 0.812 22 H 0.184 0.816 23 H 0.115 0.885 24 H 0.052 0.948 25 H 0.151 0.849 26 H 0.003 0.997 27 H 0.045 0.955 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.878 11.995 -10.641 16.059 hybrid contribution -1.881 0.092 -0.806 2.048 sum -2.759 12.087 -11.447 16.874 Atomic orbital electron populations 1.22052 0.76983 1.04347 1.03939 1.45364 1.07464 1.06811 1.54799 1.22601 0.91533 0.92312 1.13739 1.22301 0.96230 0.91485 1.07900 1.70274 1.18656 1.11504 1.19252 1.23384 0.85628 0.90727 1.04158 1.20277 0.99171 0.86259 0.93432 1.60442 1.55717 1.05277 1.08633 1.20045 0.92956 0.84691 0.98525 1.21022 1.45064 0.98649 0.90837 0.90268 1.24902 0.95011 0.97916 0.95438 1.69900 1.47497 1.18864 1.17510 0.86811 0.78570 0.81284 0.82752 1.19988 1.21213 1.19279 0.90221 0.89814 0.89509 0.81238 0.81594 0.88469 0.94836 0.84927 0.99688 0.95476 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 10.97 59.85 0.66 1.33 15 2 N -0.46 -6.34 3.15 -121.28 -0.38 -6.72 15 3 C -0.07 -0.88 11.58 -16.56 -0.19 -1.07 15 4 C -0.03 -0.45 11.87 -17.82 -0.21 -0.67 15 5 N -0.48 -8.89 11.25 -10.82 -0.12 -9.01 15 6 C 0.22 3.84 7.42 -155.42 -1.15 2.69 15 7 C 0.14 2.46 5.99 -4.97 -0.03 2.43 15 8 N -0.67 -14.26 6.48 -116.34 -0.75 -15.02 15 9 C 0.17 3.99 4.51 -4.98 -0.02 3.97 15 10 C -0.52 -14.87 9.87 -34.44 -0.34 -15.21 15 11 H 0.08 2.49 8.06 -52.49 -0.42 2.06 15 12 C 0.07 2.01 5.47 -17.82 -0.10 1.91 15 13 N -0.90 -27.65 13.96 55.43 0.77 -26.88 15 14 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 15 15 H -0.27 -6.60 7.11 56.52 0.40 -6.20 15 16 H -0.29 -6.88 7.11 56.52 0.40 -6.47 15 17 H -0.27 -6.20 6.54 56.52 0.37 -5.83 15 18 H 0.08 0.74 8.14 -51.93 -0.42 0.32 15 19 H 0.08 0.57 8.14 -51.93 -0.42 0.15 15 20 H 0.09 0.80 7.04 -51.93 -0.37 0.43 15 21 H 0.17 1.48 8.06 -52.49 -0.42 1.06 15 22 H 0.17 1.97 8.06 -52.48 -0.42 1.54 15 23 H 0.10 1.74 8.14 -51.93 -0.42 1.32 15 24 H 0.03 0.52 7.06 -51.93 -0.37 0.15 15 25 H 0.33 6.84 8.72 -39.29 -0.34 6.50 15 26 H -0.01 -0.34 7.20 -51.93 -0.37 -0.71 15 27 H 0.03 0.66 7.57 -51.93 -0.39 0.27 15 28 H 0.26 7.58 8.31 -40.82 -0.34 7.24 15 LS Contribution 245.23 15.07 3.70 3.70 Total: -1.00 -33.63 245.23 -6.39 -40.02 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -3.54 Total: 1.82 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -1.39 Total: -4.61 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: -0.48 Total: -57.63 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -33.63 -6.39 -40.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049856663.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.968 kcal (2) G-P(sol) polarization free energy of solvation -33.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds