Wall clock time and date at job start Mon Mar 30 2020 02:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36884 * 126.39816 * 2 1 4 4 C 1.34668 * 106.81452 * 180.25755 * 3 2 1 5 5 N 1.34121 * 108.02159 * 359.74130 * 4 3 2 6 6 C 1.30502 * 109.26042 * 0.02562 * 5 4 3 7 7 C 1.50697 * 125.65221 * 179.97438 * 6 5 4 8 8 N 1.46905 * 109.47066 * 90.02669 * 7 6 5 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.46943 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00162 * 359.97438 * 10 9 8 12 12 C 1.37883 * 120.00023 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99982 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99630 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46926 * 90.00445 * 14 12 10 16 16 H 1.48506 * 109.46987 * 209.99731 * 14 12 10 17 17 H 1.48494 * 109.47527 * 330.00217 * 14 12 10 18 18 H 1.08999 * 109.47176 * 270.18557 * 1 2 3 19 19 H 1.09001 * 109.46961 * 30.18549 * 1 2 3 20 20 H 1.08997 * 109.47316 * 150.18946 * 1 2 3 21 21 H 1.07998 * 126.58948 * 359.97438 * 3 2 1 22 22 H 1.08003 * 125.98696 * 179.72867 * 4 3 2 23 23 H 1.09001 * 109.47558 * 330.02832 * 7 6 5 24 24 H 1.08998 * 109.47216 * 210.02495 * 7 6 5 25 25 H 1.00901 * 110.99869 * 56.04737 * 8 7 6 26 26 H 1.09004 * 109.47031 * 299.99620 * 9 8 7 27 27 H 1.08995 * 109.47111 * 59.99900 * 9 8 7 28 28 H 0.97002 * 119.99560 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6504 -0.0058 5 7 3.5095 -0.6903 -0.0035 6 6 2.2663 -1.0870 0.0030 7 6 1.8018 -2.5206 0.0069 8 7 1.6569 -2.9846 1.3932 9 6 1.2050 -4.3817 1.4362 10 6 1.0676 -4.8213 2.8711 11 1 1.2937 -4.1319 3.6711 12 6 0.6541 -6.1039 3.1626 13 7 0.5347 -6.4876 4.4149 14 14 0.2637 -7.2965 1.7789 15 1 1.4925 -8.0431 1.4075 16 1 -0.7794 -8.2528 2.2293 17 1 -0.2323 -6.5419 0.6001 18 1 -0.3633 0.0033 1.0276 19 1 -0.3633 0.8883 -0.5167 20 1 -0.3634 -0.8916 -0.5109 21 1 1.9613 2.1345 -0.0004 22 1 4.4369 1.2611 -0.0115 23 1 2.5342 -3.1413 -0.5093 24 1 0.8409 -2.5926 -0.5026 25 1 1.0316 -2.3859 1.9114 26 1 0.2400 -4.4670 0.9365 27 1 1.9336 -5.0150 0.9300 28 1 0.2442 -7.3901 4.6199 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049856663.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:02 Heat of formation + Delta-G solvation = 40.628126 kcal Electronic energy + Delta-G solvation = -11819.640720 eV Core-core repulsion = 9677.824227 eV Total energy + Delta-G solvation = -2141.816493 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.96795 -37.28071 -34.90547 -34.59099 -31.61530 -29.14352 -27.82929 -25.85187 -23.14640 -22.26677 -20.83944 -19.00390 -17.89751 -16.83821 -16.78394 -16.08610 -15.36793 -15.31660 -14.64386 -14.50974 -14.16770 -13.74543 -13.55091 -13.33197 -13.10060 -12.53650 -12.47399 -11.84819 -11.54181 -10.88529 -10.81061 -10.53501 -9.39645 -9.15749 -8.29995 -6.35765 1.08853 1.37536 1.39828 1.50067 1.93616 2.18643 2.35167 3.04212 3.41950 3.65631 3.94368 3.98023 4.29038 4.38591 4.53709 4.62004 4.68909 4.74442 4.88130 5.02498 5.36741 5.49377 5.85576 5.89682 6.25240 6.48065 6.57015 6.72208 7.23015 7.29011 8.86913 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.063233 B = 0.007490 C = 0.007428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.703875 B = 3737.231942 C = 3768.705796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.457 5.457 3 C -0.045 4.045 4 C -0.063 4.063 5 N -0.524 5.524 6 C 0.193 3.807 7 C 0.146 3.854 8 N -0.685 5.685 9 C 0.177 3.823 10 C -0.532 4.532 11 H 0.032 0.968 12 C 0.008 3.992 13 N -0.948 5.948 14 Si 0.955 3.045 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.243 1.243 18 H 0.082 0.918 19 H 0.119 0.881 20 H 0.090 0.910 21 H 0.216 0.784 22 H 0.186 0.814 23 H 0.088 0.912 24 H 0.062 0.938 25 H 0.335 0.665 26 H 0.001 0.999 27 H 0.027 0.973 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.180 13.774 -12.977 19.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.140 5.140 3 C -0.179 4.179 4 C -0.211 4.211 5 N -0.243 5.243 6 C -0.070 4.070 7 C 0.016 3.984 8 N -0.317 5.317 9 C 0.049 3.951 10 C -0.570 4.570 11 H 0.051 0.949 12 C -0.190 4.190 13 N -0.589 5.589 14 Si 0.778 3.222 15 H -0.193 1.193 16 H -0.206 1.206 17 H -0.166 1.166 18 H 0.100 0.900 19 H 0.137 0.863 20 H 0.109 0.891 21 H 0.232 0.768 22 H 0.203 0.797 23 H 0.107 0.893 24 H 0.079 0.921 25 H 0.153 0.847 26 H 0.018 0.982 27 H 0.045 0.955 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.060 12.951 -12.819 18.339 hybrid contribution -1.488 -0.039 -0.059 1.490 sum -3.548 12.912 -12.879 18.578 Atomic orbital electron populations 1.22378 0.74510 1.06366 1.04757 1.45588 1.08987 1.06113 1.53280 1.23300 0.90603 0.93746 1.10205 1.22805 0.98361 0.90580 1.09364 1.70163 1.20120 1.13798 1.20263 1.23096 0.86069 0.91169 1.06674 1.20174 1.00282 0.86854 0.91121 1.60280 1.55838 1.04090 1.11497 1.19784 0.93618 0.86376 0.95339 1.21297 1.45045 0.98356 0.92298 0.94942 1.25922 0.94593 1.00058 0.98408 1.70063 1.48804 1.19713 1.20281 0.85602 0.78613 0.78450 0.79555 1.19340 1.20621 1.16602 0.89962 0.86305 0.89114 0.76785 0.79687 0.89337 0.92056 0.84747 0.98155 0.95460 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.97 10.97 127.77 1.40 2.37 15 2 N -0.46 -11.41 3.15 -537.61 -1.69 -13.10 15 3 C -0.04 -1.00 11.58 83.09 0.96 -0.04 15 4 C -0.06 -1.79 11.87 83.52 0.99 -0.80 15 5 N -0.52 -19.28 11.25 -188.14 -2.12 -21.40 15 6 C 0.19 6.40 7.42 138.13 1.02 7.43 15 7 C 0.15 4.99 5.99 85.55 0.51 5.50 15 8 N -0.69 -29.07 6.48 -521.98 -3.38 -32.46 15 9 C 0.18 8.42 4.51 85.56 0.39 8.80 15 10 C -0.53 -31.18 9.87 25.60 0.25 -30.93 15 11 H 0.03 2.14 8.06 -2.91 -0.02 2.11 15 12 C 0.01 0.45 5.47 84.66 0.46 0.91 15 13 N -0.95 -59.65 13.96 21.45 0.30 -59.35 15 14 Si 0.96 43.48 27.47 68.60 1.88 45.37 15 15 H -0.27 -11.91 7.11 99.48 0.71 -11.20 15 16 H -0.28 -12.44 7.11 99.48 0.71 -11.74 15 17 H -0.24 -9.99 6.54 99.48 0.65 -9.34 15 18 H 0.08 1.30 8.14 -2.39 -0.02 1.28 15 19 H 0.12 1.06 8.14 -2.39 -0.02 1.04 15 20 H 0.09 1.38 7.04 -2.39 -0.02 1.36 15 21 H 0.22 2.65 8.06 -2.91 -0.02 2.63 15 22 H 0.19 4.14 8.06 -2.91 -0.02 4.12 15 23 H 0.09 3.13 8.14 -2.39 -0.02 3.11 15 24 H 0.06 1.74 7.06 -2.39 -0.02 1.72 15 25 H 0.34 13.79 8.72 -89.69 -0.78 13.01 15 26 H 0.00 0.04 7.20 -2.39 -0.02 0.02 15 27 H 0.03 1.30 7.57 -2.39 -0.02 1.28 15 28 H 0.27 15.63 8.31 -92.71 -0.77 14.86 15 Total: -1.00 -74.72 245.23 1.30 -73.42 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.31 Total: 14.27 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 5.99 Total: -6.75 kcal Atomic # 7 Polarization: -119.42 SS G_CDS: -6.89 Total: -126.31 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.88 Total: 45.37 kcal Total: -74.72 1.30 -73.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049856663.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.051 kcal (2) G-P(sol) polarization free energy of solvation -74.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds