Wall clock time and date at job start Mon Mar 30 2020 02:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46897 * 109.47621 * 2 1 4 4 C 1.46901 * 111.00565 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.47420 * 179.97438 * 4 3 2 6 6 N 1.30483 * 125.74379 * 90.02205 * 5 4 3 7 7 C 1.34250 * 109.40304 * 179.97438 * 6 5 4 8 8 C 1.34632 * 108.27701 * 0.26454 * 7 6 5 9 9 N 1.36270 * 125.74383 * 270.02648 * 5 4 3 10 10 C 1.37559 * 126.51292 * 359.97438 * 9 5 4 11 11 H 1.07998 * 120.00368 * 0.02562 * 10 9 5 12 12 C 1.38946 * 119.99861 * 180.02562 * 10 9 5 13 13 N 1.31322 * 119.99841 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99860 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47092 * 60.00153 * 14 12 10 16 16 H 1.48492 * 109.47124 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47128 * 300.00416 * 14 12 10 18 18 H 1.09002 * 109.46859 * 59.99961 * 1 2 3 19 19 H 1.08993 * 109.47001 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.46599 * 300.00415 * 1 2 3 21 21 H 1.09001 * 109.47324 * 239.99638 * 2 1 3 22 22 H 1.09007 * 109.47306 * 120.00190 * 2 1 3 23 23 H 1.00908 * 110.99963 * 303.95385 * 3 2 1 24 24 H 1.09005 * 109.46837 * 59.99518 * 4 3 2 25 25 H 1.09001 * 109.46655 * 299.99879 * 4 3 2 26 26 H 1.08002 * 125.85845 * 179.97438 * 7 6 5 27 27 H 1.08002 * 126.58439 * 179.73460 * 8 7 6 28 28 H 0.96999 * 119.99902 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4883 1.4241 -0.0006 5 6 3.9526 2.8578 -0.0012 6 7 4.1883 3.5831 1.0575 7 6 4.5854 4.8085 0.6793 8 6 4.5931 4.8532 -0.6663 9 7 4.1969 3.6149 -1.1076 10 6 4.0671 3.2157 -2.4176 11 1 3.7418 2.2117 -2.6465 12 6 4.3546 4.1043 -3.4463 13 7 4.7506 5.3251 -3.1680 14 14 4.1776 3.5625 -5.2252 15 1 2.7718 3.1588 -5.4822 16 1 4.5423 4.6870 -6.1238 17 1 5.0785 2.4106 -5.4838 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 1.8934 -0.5139 -0.8899 22 1 1.8934 -0.5139 0.8900 23 1 1.6443 1.9013 -0.7814 24 1 3.8648 0.9202 -0.8908 25 1 3.8655 0.9200 0.8892 26 1 4.8486 5.6205 1.3409 27 1 4.8615 5.6999 -1.2807 28 1 4.9510 5.9456 -3.8862 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051004933.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:13 Heat of formation + Delta-G solvation = 30.769835 kcal Electronic energy + Delta-G solvation = -12155.387854 eV Core-core repulsion = 10013.143874 eV Total energy + Delta-G solvation = -2142.243980 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.26674 -37.35909 -35.92076 -32.89220 -32.20219 -29.32992 -27.28509 -25.54809 -22.90614 -22.16976 -20.92057 -19.39882 -17.45995 -16.72237 -16.26977 -16.11307 -15.10831 -15.01627 -14.79934 -14.15679 -13.72726 -13.56515 -13.20215 -12.95778 -12.78347 -12.51516 -12.44871 -12.20290 -11.98997 -11.56101 -10.42976 -10.32332 -9.37874 -8.80115 -8.61728 -6.50585 1.29987 1.35842 1.50703 1.83054 2.09525 2.55485 2.93116 3.11507 3.54722 3.89589 4.26611 4.31655 4.45940 4.58080 4.69524 4.89013 4.97525 5.03203 5.09533 5.13261 5.33972 5.49404 5.61162 6.08624 6.29516 6.39213 6.50629 6.82816 7.49118 7.78932 8.34940 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.028230 B = 0.013320 C = 0.009550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.603724 B = 2101.606451 C = 2931.321081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.052 3.948 3 N -0.693 5.693 4 C 0.178 3.822 5 C 0.084 3.916 6 N -0.523 5.523 7 C -0.113 4.113 8 C -0.080 4.080 9 N -0.275 5.275 10 C -0.367 4.367 11 H 0.118 0.882 12 C 0.000 4.000 13 N -0.869 5.869 14 Si 1.020 2.980 15 H -0.257 1.257 16 H -0.270 1.270 17 H -0.259 1.259 18 H 0.050 0.950 19 H 0.082 0.918 20 H 0.054 0.946 21 H 0.034 0.966 22 H 0.077 0.923 23 H 0.336 0.664 24 H 0.039 0.961 25 H 0.089 0.911 26 H 0.165 0.835 27 H 0.186 0.814 28 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.409 -7.395 -2.693 9.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.077 4.077 3 N -0.326 5.326 4 C 0.048 3.952 5 C -0.173 4.173 6 N -0.245 5.245 7 C -0.266 4.266 8 C -0.223 4.223 9 N 0.059 4.941 10 C -0.495 4.495 11 H 0.136 0.864 12 C -0.206 4.206 13 N -0.500 5.500 14 Si 0.839 3.161 15 H -0.182 1.182 16 H -0.195 1.195 17 H -0.184 1.184 18 H 0.069 0.931 19 H 0.101 0.899 20 H 0.073 0.927 21 H 0.052 0.948 22 H 0.095 0.905 23 H 0.153 0.847 24 H 0.057 0.943 25 H 0.107 0.893 26 H 0.182 0.818 27 H 0.203 0.797 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.515 -7.536 -1.457 8.905 hybrid contribution 0.491 0.456 -2.223 2.322 sum -4.024 -7.080 -3.680 8.936 Atomic orbital electron populations 1.21722 0.93672 1.02686 1.01943 1.22040 0.96774 0.88001 1.00872 1.60532 1.06914 1.14879 1.50241 1.19714 0.87973 0.86802 1.00730 1.23236 1.14523 0.97677 0.81847 1.69770 1.20394 1.04482 1.29812 1.22242 1.14056 0.96645 0.93608 1.23711 1.11542 0.91736 0.95348 1.41919 1.37241 1.08861 1.06118 1.20392 1.48122 1.01113 0.79885 0.86402 1.26648 0.93419 0.94427 1.06133 1.69807 1.38438 1.05934 1.35835 0.84604 0.79812 0.78474 0.73192 1.18165 1.19474 1.18355 0.93119 0.89942 0.92662 0.94797 0.90477 0.84697 0.94267 0.89277 0.81814 0.79746 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 10.17 71.98 0.73 -2.53 15 2 C 0.05 1.41 6.40 86.31 0.55 1.97 15 3 N -0.69 -25.51 6.49 -517.92 -3.36 -28.87 15 4 C 0.18 7.32 5.93 85.56 0.51 7.83 15 5 C 0.08 4.33 7.42 137.74 1.02 5.35 15 6 N -0.52 -28.25 11.24 -187.20 -2.11 -30.35 15 7 C -0.11 -5.96 11.85 83.50 0.99 -4.97 15 8 C -0.08 -4.44 10.40 83.01 0.86 -3.58 15 9 N -0.28 -15.02 2.93 -340.17 -1.00 -16.01 15 10 C -0.37 -18.88 9.92 83.96 0.83 -18.05 15 11 H 0.12 5.57 7.07 -2.91 -0.02 5.55 15 12 C 0.00 0.01 5.48 84.94 0.47 0.48 15 13 N -0.87 -44.66 10.19 21.66 0.22 -44.44 15 14 Si 1.02 36.97 29.55 68.60 2.03 39.00 15 15 H -0.26 -8.90 7.11 99.48 0.71 -8.19 15 16 H -0.27 -9.48 7.11 99.48 0.71 -8.77 15 17 H -0.26 -9.02 7.11 99.48 0.71 -8.32 15 18 H 0.05 1.17 8.14 -2.39 -0.02 1.15 15 19 H 0.08 1.45 8.14 -2.39 -0.02 1.43 15 20 H 0.05 1.34 8.14 -2.38 -0.02 1.32 15 21 H 0.03 0.87 8.14 -2.39 -0.02 0.85 15 22 H 0.08 1.98 8.14 -2.38 -0.02 1.96 15 23 H 0.34 13.01 8.72 -89.69 -0.78 12.23 15 24 H 0.04 1.54 7.37 -2.38 -0.02 1.53 15 25 H 0.09 3.47 8.14 -2.39 -0.02 3.45 15 26 H 0.16 7.52 8.06 -2.91 -0.02 7.49 15 27 H 0.19 10.37 5.60 -2.91 -0.02 10.36 15 28 H 0.29 13.45 8.31 -92.71 -0.77 12.68 15 Total: -1.00 -61.60 243.27 2.12 -59.48 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: 0.37 Total: 34.71 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 5.96 Total: -13.51 kcal Atomic # 7 Polarization: -113.44 SS G_CDS: -6.24 Total: -119.68 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 2.03 Total: 39.00 kcal Total: -61.60 2.12 -59.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051004933.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.249 kcal (2) G-P(sol) polarization free energy of solvation -61.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds