Wall clock time and date at job start Mon Mar 30 2020 01:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46987 * 2 1 4 4 C 1.52998 * 109.47399 * 240.00046 * 2 1 3 5 5 C 1.50700 * 109.47338 * 119.99904 * 2 1 3 6 6 N 1.31393 * 125.15907 * 239.97330 * 5 2 1 7 7 N 1.40460 * 107.18299 * 179.76408 * 6 5 2 8 8 H 0.97000 * 127.02185 * 180.26604 * 7 6 5 9 9 C 1.37026 * 105.96407 * 0.41198 * 7 6 5 10 10 C 1.40369 * 126.31903 * 179.85746 * 9 7 6 11 11 H 1.08002 * 120.00500 * 179.69176 * 10 9 7 12 12 C 1.40270 * 119.99779 * 359.40880 * 10 9 7 13 13 N 1.30644 * 120.00022 * 0.28004 * 12 10 9 14 14 Si 1.86803 * 120.00024 * 180.27829 * 12 10 9 15 15 H 1.48490 * 109.47019 * 60.00156 * 14 12 10 16 16 H 1.48504 * 109.47032 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46993 * 300.00123 * 14 12 10 18 18 N 1.32229 * 125.15905 * 60.00623 * 5 2 1 19 19 H 1.09000 * 109.46872 * 299.99608 * 1 2 3 20 20 H 1.08994 * 109.47198 * 60.00210 * 1 2 3 21 21 H 1.09002 * 109.46703 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47057 * 180.02562 * 3 2 1 23 23 H 1.08993 * 109.47499 * 299.99920 * 3 2 1 24 24 H 1.09000 * 109.46995 * 60.00467 * 3 2 1 25 25 H 1.08997 * 109.47276 * 300.00030 * 4 2 1 26 26 H 1.09004 * 109.47115 * 59.99795 * 4 2 1 27 27 H 1.08999 * 109.47571 * 179.97438 * 4 2 1 28 28 H 0.96996 * 120.00314 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 2.7914 -0.1720 2.1581 7 7 3.0277 -1.1614 3.1267 8 1 3.5511 -1.0709 3.9383 9 6 2.3709 -2.2816 2.6893 10 6 2.3277 -3.5261 3.3370 11 1 1.7717 -4.3429 2.9009 12 6 3.0116 -3.7108 4.5476 13 7 3.6843 -2.7228 5.0751 14 14 2.9606 -5.3693 5.4057 15 1 3.5301 -6.4077 4.5100 16 1 3.7570 -5.3037 6.6574 17 1 1.5537 -5.7146 5.7321 18 7 1.7767 -1.9702 1.5401 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 3.1299 1.4425 -0.0005 23 1 1.6766 1.9564 -0.8899 24 1 1.6766 1.9563 0.8900 25 1 1.6767 -1.7489 -1.2493 26 1 1.6767 -0.2074 -2.1392 27 1 3.1300 -0.7208 -1.2495 28 1 4.1570 -2.8503 5.9125 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059816466.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:28 Heat of formation + Delta-G solvation = 23.716166 kcal Electronic energy + Delta-G solvation = -12260.294006 eV Core-core repulsion = 10117.744156 eV Total energy + Delta-G solvation = -2142.549850 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.84601 -37.61498 -35.66584 -32.16573 -31.26160 -28.46454 -28.05827 -27.50551 -23.55954 -22.20163 -19.81535 -19.04555 -17.38264 -16.74252 -15.76406 -15.73942 -15.08165 -14.59092 -14.51331 -13.52504 -13.37471 -13.09929 -12.91692 -12.90634 -12.52006 -12.15770 -11.95924 -11.86992 -11.83560 -11.71750 -11.37524 -10.22544 -10.17118 -9.94277 -8.99497 -6.90142 1.18281 1.40274 1.56074 1.69925 2.15539 2.36154 2.78176 3.29198 3.69017 4.02156 4.18676 4.42518 4.70285 4.85345 4.94349 4.95771 5.04089 5.06277 5.06435 5.13028 5.24903 5.51287 5.59083 5.65604 6.08426 6.25415 6.55830 6.60682 7.35334 8.05439 8.18531 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.072425 B = 0.009453 C = 0.008867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.516525 B = 2961.429638 C = 3156.878350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.021 3.979 3 C -0.120 4.120 4 C -0.122 4.122 5 C 0.220 3.780 6 N -0.432 5.432 7 N -0.526 5.526 8 H 0.435 0.565 9 C 0.380 3.620 10 C -0.460 4.460 11 H 0.103 0.897 12 C 0.037 3.963 13 N -0.852 5.852 14 Si 1.024 2.976 15 H -0.256 1.256 16 H -0.262 1.262 17 H -0.256 1.256 18 N -0.652 5.652 19 H 0.036 0.964 20 H 0.096 0.904 21 H 0.047 0.953 22 H 0.042 0.958 23 H 0.092 0.908 24 H 0.042 0.958 25 H 0.047 0.953 26 H 0.096 0.904 27 H 0.036 0.964 28 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.145 0.887 -4.021 4.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.018 3.982 3 C -0.178 4.178 4 C -0.180 4.180 5 C -0.063 4.063 6 N -0.267 5.267 7 N -0.252 5.252 8 H 0.289 0.711 9 C 0.127 3.873 10 C -0.501 4.501 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.484 5.484 14 Si 0.842 3.158 15 H -0.180 1.180 16 H -0.186 1.186 17 H -0.180 1.180 18 N -0.390 5.390 19 H 0.056 0.944 20 H 0.114 0.886 21 H 0.066 0.934 22 H 0.061 0.939 23 H 0.111 0.889 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.114 0.886 27 H 0.056 0.944 28 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.950 1.533 -4.076 4.771 hybrid contribution 0.628 -0.622 1.374 1.634 sum -1.322 0.911 -2.702 3.143 Atomic orbital electron populations 1.21696 0.92300 1.01838 1.02122 1.19058 0.96455 0.94521 0.88183 1.21652 1.00465 0.93475 1.02204 1.21698 0.99903 1.00318 0.96044 1.24396 0.94664 0.90549 0.96718 1.77528 1.28959 1.15946 1.04257 1.48693 1.46341 1.08073 1.22069 0.71122 1.21375 0.87335 0.89766 0.88845 1.19007 1.30626 0.94860 1.05627 0.87940 1.27134 0.90533 1.04121 0.96073 1.68759 1.25152 1.35063 1.19465 0.84601 0.79918 0.74194 0.77065 1.17998 1.18592 1.17982 1.70666 1.35228 1.15804 1.17340 0.94429 0.88557 0.93401 0.93915 0.88880 0.93907 0.93397 0.88568 0.94430 0.88203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.05 8.46 71.98 0.61 -3.45 15 2 C 0.02 0.79 0.99 -52.93 -0.05 0.74 15 3 C -0.12 -3.97 7.91 71.98 0.57 -3.40 15 4 C -0.12 -4.06 8.46 71.98 0.61 -3.45 15 5 C 0.22 11.36 6.31 138.74 0.88 12.23 15 6 N -0.43 -23.90 12.04 -51.55 -0.62 -24.52 15 7 N -0.53 -30.38 7.16 -55.50 -0.40 -30.77 15 8 H 0.44 24.48 6.38 -213.09 -1.36 23.12 15 9 C 0.38 22.36 7.67 133.83 1.03 23.39 15 10 C -0.46 -25.15 9.47 23.28 0.22 -24.93 15 11 H 0.10 5.38 7.85 -2.91 -0.02 5.36 15 12 C 0.04 1.76 5.50 85.36 0.47 2.23 15 13 N -0.85 -41.91 10.72 21.88 0.23 -41.68 15 14 Si 1.02 35.99 29.56 68.60 2.03 38.02 15 15 H -0.26 -8.75 7.11 99.48 0.71 -8.04 15 16 H -0.26 -8.50 7.11 99.48 0.71 -7.79 15 17 H -0.26 -8.74 7.11 99.48 0.71 -8.03 15 18 N -0.65 -37.07 11.24 -185.91 -2.09 -39.16 15 19 H 0.04 1.31 8.14 -2.39 -0.02 1.29 15 20 H 0.10 2.33 8.14 -2.39 -0.02 2.31 15 21 H 0.05 1.74 8.14 -2.39 -0.02 1.72 15 22 H 0.04 1.50 8.14 -2.39 -0.02 1.48 15 23 H 0.09 2.24 8.14 -2.39 -0.02 2.22 15 24 H 0.04 1.50 8.14 -2.39 -0.02 1.48 15 25 H 0.05 1.74 8.14 -2.39 -0.02 1.72 15 26 H 0.10 2.33 8.14 -2.38 -0.02 2.31 15 27 H 0.04 1.31 8.14 -2.39 -0.02 1.29 15 28 H 0.31 13.27 8.29 -92.71 -0.77 12.50 15 Total: -1.00 -65.08 242.62 3.28 -61.80 By element: Atomic # 1 Polarization: 33.15 SS G_CDS: -0.21 Total: 32.95 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 4.33 Total: 3.36 kcal Atomic # 7 Polarization: -133.25 SS G_CDS: -2.87 Total: -136.13 kcal Atomic # 14 Polarization: 35.99 SS G_CDS: 2.03 Total: 38.02 kcal Total: -65.08 3.28 -61.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059816466.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.516 kcal (2) G-P(sol) polarization free energy of solvation -65.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds