Wall clock time and date at job start Mon Mar 30 2020 01:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47271 * 2 1 4 4 C 1.53004 * 109.47428 * 239.99546 * 2 1 3 5 5 C 1.50699 * 109.46997 * 295.00780 * 4 2 1 6 6 N 1.31401 * 125.15296 * 269.68901 * 5 4 2 7 7 N 1.40465 * 107.17897 * 179.91463 * 6 5 4 8 8 H 0.96995 * 127.01463 * 180.11700 * 7 6 5 9 9 C 1.37026 * 105.96443 * 0.34316 * 7 6 5 10 10 C 1.40374 * 126.31393 * 179.77015 * 9 7 6 11 11 H 1.07999 * 120.00041 * 172.74419 * 10 9 7 12 12 C 1.40273 * 119.99952 * 352.73684 * 10 9 7 13 13 N 1.30649 * 119.99810 * 6.09769 * 12 10 9 14 14 Si 1.86792 * 119.99900 * 186.09629 * 12 10 9 15 15 H 1.48500 * 109.47433 * 94.97790 * 14 12 10 16 16 H 1.48505 * 109.47131 * 214.97670 * 14 12 10 17 17 H 1.48498 * 109.47401 * 334.97671 * 14 12 10 18 18 N 1.32231 * 125.16172 * 89.99885 * 5 4 2 19 19 H 1.09008 * 109.47057 * 60.00314 * 1 2 3 20 20 H 1.08998 * 109.47464 * 300.00078 * 1 2 3 21 21 H 1.09001 * 109.47492 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46604 * 119.99959 * 2 1 3 23 23 H 1.08998 * 109.46940 * 59.99601 * 3 2 1 24 24 H 1.08999 * 109.46606 * 179.97438 * 3 2 1 25 25 H 1.08998 * 109.46816 * 299.99824 * 3 2 1 26 26 H 1.09006 * 109.46573 * 55.00294 * 4 2 1 27 27 H 1.08997 * 109.47506 * 175.00165 * 4 2 1 28 28 H 0.97002 * 119.99357 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 1.6413 -2.1734 -1.1888 6 7 2.3616 -3.1342 -0.6554 7 7 1.6357 -4.3277 -0.8031 8 1 1.9014 -5.2129 -0.5088 9 6 0.4781 -3.9869 -1.4522 10 6 -0.5568 -4.8609 -1.8204 11 1 -1.4778 -4.4675 -2.2247 12 6 -0.3947 -6.2454 -1.6634 13 7 0.6680 -6.7150 -1.0659 14 14 -1.6982 -7.4174 -2.3086 15 1 -1.3164 -7.8840 -3.6657 16 1 -1.8094 -8.5845 -1.3971 17 1 -3.0052 -6.7157 -2.3760 18 7 0.5161 -2.6746 -1.6696 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8932 -0.5138 0.8900 23 1 1.6766 1.9563 0.8899 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6054 -0.2618 -2.1370 27 1 3.1264 -0.6445 -1.2951 28 1 0.7799 -7.6724 -0.9570 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059816884.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:31 Heat of formation + Delta-G solvation = 20.680421 kcal Electronic energy + Delta-G solvation = -12068.726144 eV Core-core repulsion = 9926.044654 eV Total energy + Delta-G solvation = -2142.681490 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.79489 -37.30494 -35.75674 -32.31074 -31.89097 -28.69008 -27.88796 -27.37229 -22.81200 -21.43640 -20.20098 -19.64059 -17.42308 -16.84377 -15.82814 -15.77658 -15.27317 -14.63874 -14.44378 -13.53934 -13.45572 -13.18243 -13.00485 -12.94953 -12.57501 -12.11202 -11.90854 -11.82791 -11.69753 -11.52042 -11.36119 -10.23626 -10.20209 -9.93237 -8.99904 -6.90107 1.16259 1.40799 1.58869 1.67309 2.15906 2.33819 2.78678 3.26917 3.82061 4.02427 4.14711 4.38445 4.60188 4.73363 4.89702 4.94242 5.03506 5.07311 5.11755 5.24100 5.29383 5.53644 5.55144 5.65992 6.07145 6.23824 6.55304 6.59899 7.33833 8.04397 8.17528 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.075630 B = 0.008634 C = 0.008079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.136786 B = 3242.357154 C = 3464.840196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 C -0.133 4.133 4 C -0.011 4.011 5 C 0.215 3.785 6 N -0.438 5.438 7 N -0.524 5.524 8 H 0.435 0.565 9 C 0.380 3.620 10 C -0.460 4.460 11 H 0.103 0.897 12 C 0.037 3.963 13 N -0.851 5.851 14 Si 1.024 2.976 15 H -0.260 1.260 16 H -0.261 1.261 17 H -0.254 1.254 18 N -0.647 5.647 19 H 0.061 0.939 20 H 0.063 0.937 21 H 0.023 0.977 22 H 0.048 0.952 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.211 5.102 0.441 5.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 C -0.190 4.190 4 C -0.051 4.051 5 C -0.069 4.069 6 N -0.274 5.274 7 N -0.250 5.250 8 H 0.289 0.711 9 C 0.127 3.873 10 C -0.501 4.501 11 H 0.121 0.879 12 C -0.178 4.178 13 N -0.483 5.483 14 Si 0.842 3.158 15 H -0.185 1.185 16 H -0.185 1.185 17 H -0.177 1.177 18 N -0.386 5.386 19 H 0.080 0.920 20 H 0.082 0.918 21 H 0.042 0.958 22 H 0.066 0.934 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.608 5.264 0.697 5.344 hybrid contribution -0.171 -1.541 0.034 1.551 sum -0.779 3.723 0.731 3.873 Atomic orbital electron populations 1.21734 0.95287 1.00572 1.01781 1.20990 0.96066 0.97275 0.95954 1.21748 1.01300 0.93141 1.02840 1.20001 1.00910 0.84235 0.99986 1.24415 0.89963 0.97587 0.94888 1.77522 1.23520 0.92349 1.34006 1.48642 1.16506 1.08971 1.50837 0.71142 1.21392 0.87449 0.90096 0.88329 1.19029 1.00690 0.90351 1.40001 0.87929 1.27130 0.99014 1.00146 0.91559 1.68807 1.28257 1.18017 1.33194 0.84547 0.76913 0.75746 0.78593 1.18463 1.18527 1.17711 1.70752 1.24684 1.07209 1.35999 0.92023 0.91781 0.95760 0.93378 0.91397 0.91825 0.91448 0.89600 0.89863 0.88223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.67 9.00 71.98 0.65 -4.02 15 2 C -0.08 -2.73 2.91 -10.79 -0.03 -2.76 15 3 C -0.13 -3.07 9.19 71.98 0.66 -2.41 15 4 C -0.01 -0.44 5.32 29.85 0.16 -0.28 15 5 C 0.21 11.04 6.56 138.74 0.91 11.95 15 6 N -0.44 -24.28 12.80 -51.55 -0.66 -24.94 15 7 N -0.52 -30.12 7.16 -55.50 -0.40 -30.52 15 8 H 0.44 24.37 6.43 -213.09 -1.37 23.00 15 9 C 0.38 22.23 7.66 133.83 1.03 23.26 15 10 C -0.46 -24.98 9.47 23.29 0.22 -24.76 15 11 H 0.10 5.38 7.86 -2.91 -0.02 5.36 15 12 C 0.04 1.77 5.49 85.36 0.47 2.24 15 13 N -0.85 -41.61 10.77 21.88 0.24 -41.37 15 14 Si 1.02 35.89 29.57 68.60 2.03 37.92 15 15 H -0.26 -8.82 7.11 99.48 0.71 -8.11 15 16 H -0.26 -8.51 7.11 99.48 0.71 -7.81 15 17 H -0.25 -8.69 7.11 99.48 0.71 -7.98 15 18 N -0.65 -36.50 10.50 -185.90 -1.95 -38.45 15 19 H 0.06 1.95 8.14 -2.38 -0.02 1.94 15 20 H 0.06 1.85 8.14 -2.39 -0.02 1.83 15 21 H 0.02 1.03 6.81 -2.39 -0.02 1.01 15 22 H 0.05 1.75 8.14 -2.39 -0.02 1.73 15 23 H 0.07 1.37 8.14 -2.39 -0.02 1.35 15 24 H 0.06 1.34 8.14 -2.39 -0.02 1.32 15 25 H 0.07 1.40 8.14 -2.39 -0.02 1.38 15 26 H 0.09 3.07 8.14 -2.38 -0.02 3.05 15 27 H 0.08 2.90 8.14 -2.39 -0.02 2.88 15 28 H 0.31 13.14 8.29 -92.71 -0.77 12.37 15 Total: -1.00 -63.95 242.24 3.10 -60.84 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: -0.21 Total: 33.31 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 4.06 Total: 3.22 kcal Atomic # 7 Polarization: -132.51 SS G_CDS: -2.77 Total: -135.29 kcal Atomic # 14 Polarization: 35.89 SS G_CDS: 2.03 Total: 37.92 kcal Total: -63.95 3.10 -60.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059816884.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.523 kcal (2) G-P(sol) polarization free energy of solvation -63.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds