Wall clock time and date at job start Mon Mar 30 2020 02:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 109.46697 * 2 1 4 4 N 1.46897 * 109.46710 * 239.99791 * 2 1 3 5 5 C 1.53006 * 109.46826 * 119.99935 * 2 1 3 6 6 C 1.50696 * 109.46905 * 184.99835 * 5 2 1 7 7 N 1.30486 * 125.74428 * 269.96260 * 6 5 2 8 8 C 1.34247 * 109.40482 * 180.02562 * 7 6 5 9 9 C 1.34642 * 108.27716 * 359.75938 * 8 7 6 10 10 N 1.36274 * 125.74480 * 89.99887 * 6 5 2 11 11 C 1.37557 * 126.51093 * 359.93240 * 10 6 5 12 12 H 1.08000 * 120.00530 * 359.72004 * 11 10 6 13 13 C 1.38945 * 120.00110 * 180.02562 * 11 10 6 14 14 N 1.31328 * 119.99503 * 359.71797 * 13 11 10 15 15 Si 1.86798 * 119.99999 * 179.72476 * 13 11 10 16 16 H 1.48498 * 109.47416 * 59.99616 * 15 13 11 17 17 H 1.48508 * 109.46609 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46903 * 299.99201 * 15 13 11 19 19 H 1.09004 * 109.47077 * 299.99878 * 1 2 3 20 20 H 1.08993 * 109.47260 * 59.99975 * 1 2 3 21 21 H 1.09005 * 109.47276 * 180.02562 * 1 2 3 22 22 H 1.00897 * 111.00177 * 299.99663 * 4 2 1 23 23 H 1.00894 * 111.00058 * 63.96075 * 4 2 1 24 24 H 1.09000 * 109.46980 * 65.00117 * 5 2 1 25 25 H 1.08996 * 109.47261 * 304.99906 * 5 2 1 26 26 H 1.07992 * 125.86387 * 179.97438 * 8 7 6 27 27 H 1.08001 * 126.58748 * 180.22933 * 9 8 7 28 28 H 0.97000 * 120.00060 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0400 -0.7213 1.2493 6 6 3.5419 -0.6150 1.3128 7 7 4.3886 -1.4599 0.7913 8 6 5.6414 -1.0488 1.0435 9 6 5.5763 0.0988 1.7445 10 7 4.2444 0.3793 1.9250 11 6 3.7190 1.4617 2.5917 12 1 2.6484 1.5849 2.6624 13 6 4.5657 2.4002 3.1689 14 7 5.8675 2.2507 3.0826 15 14 3.8521 3.8741 4.0676 16 1 3.0121 3.4051 5.1988 17 1 4.9571 4.7184 4.5889 18 1 3.0201 4.6703 3.1300 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 1.6962 -1.6480 -1.2227 23 1 1.7503 -0.1990 -2.0372 24 1 1.7517 -1.7715 1.2056 25 1 1.6054 -0.2618 2.1370 26 1 6.5463 -1.5505 0.7339 27 1 6.4113 0.6849 2.0991 28 1 6.4587 2.9060 3.4851 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062802823.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:12 Heat of formation + Delta-G solvation = 24.555482 kcal Electronic energy + Delta-G solvation = -12360.792842 eV Core-core repulsion = 10218.279387 eV Total energy + Delta-G solvation = -2142.513455 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.15174 -37.43861 -35.81674 -32.74938 -31.33573 -29.50239 -27.49346 -26.62717 -22.16019 -21.82383 -20.75573 -19.27367 -17.39414 -16.99871 -16.08829 -15.68085 -15.29472 -14.60404 -14.49207 -14.01106 -13.81955 -13.58951 -13.13877 -12.91952 -12.81480 -12.47221 -12.34348 -12.18286 -11.82722 -11.44612 -10.28022 -10.21247 -9.35562 -8.63454 -8.54769 -6.41534 1.34843 1.37248 1.52136 1.95187 2.13620 2.73000 3.06787 3.24883 3.79877 3.95224 4.17219 4.44691 4.46661 4.69783 4.84140 4.95659 5.00044 5.09456 5.19320 5.22632 5.36618 5.60845 5.69942 6.41420 6.46848 6.59780 6.81427 6.92654 7.62301 7.93197 8.42267 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.033466 B = 0.013896 C = 0.010406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.458986 B = 2014.486850 C = 2690.235381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.101 3.899 3 H 0.049 0.951 4 N -0.844 5.844 5 C -0.003 4.003 6 C 0.108 3.892 7 N -0.512 5.512 8 C -0.121 4.121 9 C -0.086 4.086 10 N -0.286 5.286 11 C -0.364 4.364 12 H 0.121 0.879 13 C -0.006 4.006 14 N -0.876 5.876 15 Si 1.019 2.981 16 H -0.257 1.257 17 H -0.273 1.273 18 H -0.258 1.258 19 H 0.065 0.935 20 H 0.066 0.934 21 H 0.067 0.933 22 H 0.344 0.656 23 H 0.342 0.658 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.157 0.843 27 H 0.180 0.820 28 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.209 1.143 -1.647 9.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.012 4.012 3 H 0.067 0.933 4 N -0.375 5.375 5 C -0.042 4.042 6 C -0.150 4.150 7 N -0.233 5.233 8 C -0.273 4.273 9 C -0.229 4.229 10 N 0.047 4.953 11 C -0.492 4.492 12 H 0.139 0.861 13 C -0.211 4.211 14 N -0.508 5.508 15 Si 0.838 3.162 16 H -0.181 1.181 17 H -0.197 1.197 18 H -0.182 1.182 19 H 0.084 0.916 20 H 0.085 0.915 21 H 0.086 0.914 22 H 0.158 0.842 23 H 0.155 0.845 24 H 0.101 0.899 25 H 0.093 0.907 26 H 0.175 0.825 27 H 0.197 0.803 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.608 0.799 -1.635 8.799 hybrid contribution -0.281 1.171 0.525 1.313 sum -8.889 1.970 -1.110 9.172 Atomic orbital electron populations 1.22516 0.94875 1.02849 1.02892 1.21213 0.93187 0.96680 0.90079 0.93292 1.58566 1.68688 1.06430 1.03829 1.19775 0.84963 1.01452 0.98045 1.23304 0.96309 0.90353 1.04999 1.69764 1.00079 1.29433 1.23989 1.22148 0.95750 0.99274 1.10133 1.23614 0.88365 1.01464 1.09431 1.41903 1.05597 1.15995 1.31770 1.20421 0.95031 1.00655 1.33136 0.86142 1.26671 0.95241 1.02295 0.96900 1.69851 1.04103 1.36253 1.40642 0.84624 0.78066 0.75260 0.78227 1.18078 1.19737 1.18235 0.91638 0.91539 0.91374 0.84212 0.84478 0.89932 0.90726 0.82526 0.80345 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 9.48 71.99 0.68 -3.38 15 2 C 0.10 3.39 3.35 44.92 0.15 3.54 15 3 H 0.05 1.93 8.14 -2.39 -0.02 1.91 15 4 N -0.84 -27.57 8.95 -168.67 -1.51 -29.08 15 5 C 0.00 -0.11 5.11 29.85 0.15 0.04 15 6 C 0.11 5.56 6.89 137.73 0.95 6.51 15 7 N -0.51 -27.48 11.24 -187.20 -2.10 -29.58 15 8 C -0.12 -6.55 11.85 83.50 0.99 -5.56 15 9 C -0.09 -4.94 10.40 83.01 0.86 -4.07 15 10 N -0.29 -16.01 2.93 -340.16 -1.00 -17.01 15 11 C -0.36 -19.28 9.92 83.96 0.83 -18.45 15 12 H 0.12 5.80 7.08 -2.91 -0.02 5.78 15 13 C -0.01 -0.30 5.48 84.94 0.47 0.17 15 14 N -0.88 -46.88 10.19 21.66 0.22 -46.66 15 15 Si 1.02 38.20 29.55 68.60 2.03 40.23 15 16 H -0.26 -9.12 7.11 99.48 0.71 -8.41 15 17 H -0.27 -9.94 7.11 99.48 0.71 -9.23 15 18 H -0.26 -9.22 7.11 99.48 0.71 -8.51 15 19 H 0.06 1.48 8.14 -2.38 -0.02 1.46 15 20 H 0.07 1.37 8.14 -2.39 -0.02 1.35 15 21 H 0.07 1.42 8.14 -2.38 -0.02 1.40 15 22 H 0.34 10.05 9.00 -89.70 -0.81 9.24 15 23 H 0.34 9.39 9.07 -89.70 -0.81 8.58 15 24 H 0.08 2.98 8.14 -2.39 -0.02 2.96 15 25 H 0.07 2.79 7.37 -2.39 -0.02 2.77 15 26 H 0.16 7.50 8.06 -2.91 -0.02 7.48 15 27 H 0.18 10.47 5.59 -2.91 -0.02 10.45 15 28 H 0.28 13.88 8.31 -92.71 -0.77 13.11 15 Total: -1.00 -65.26 241.83 2.28 -62.98 By element: Atomic # 1 Polarization: 40.78 SS G_CDS: -0.44 Total: 40.34 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: 5.08 Total: -21.22 kcal Atomic # 7 Polarization: -117.94 SS G_CDS: -4.39 Total: -122.33 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Total: -65.26 2.28 -62.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062802823.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.538 kcal (2) G-P(sol) polarization free energy of solvation -65.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds