Wall clock time and date at job start Mon Mar 30 2020 02:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46505 * 2 1 4 4 N 1.46896 * 109.47375 * 120.00390 * 2 1 3 5 5 C 1.53002 * 109.46880 * 240.00774 * 2 1 3 6 6 C 1.50698 * 109.47068 * 174.99721 * 5 2 1 7 7 N 1.30484 * 125.74481 * 89.97286 * 6 5 2 8 8 C 1.34248 * 109.40392 * 180.02562 * 7 6 5 9 9 C 1.34633 * 108.27693 * 359.97438 * 8 7 6 10 10 N 1.36271 * 125.74423 * 269.99486 * 6 5 2 11 11 C 1.37557 * 126.51286 * 0.02562 * 10 6 5 12 12 H 1.08005 * 119.99916 * 0.02562 * 11 10 6 13 13 C 1.38932 * 120.00100 * 179.97438 * 11 10 6 14 14 N 1.31327 * 120.00120 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00348 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46726 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46929 * 120.00009 * 15 13 11 18 18 H 1.48492 * 109.47600 * 240.00300 * 15 13 11 19 19 H 1.09004 * 109.47218 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46820 * 299.99236 * 1 2 3 21 21 H 1.08995 * 109.47518 * 59.99933 * 1 2 3 22 22 H 1.00898 * 110.99914 * 60.00230 * 4 2 1 23 23 H 1.00898 * 110.99542 * 183.95527 * 4 2 1 24 24 H 1.08994 * 109.47482 * 54.99574 * 5 2 1 25 25 H 1.09003 * 109.46661 * 294.99554 * 5 2 1 26 26 H 1.07997 * 125.85781 * 179.97438 * 8 7 6 27 27 H 1.08003 * 126.58293 * 179.97438 * 9 8 7 28 28 H 0.96998 * 120.00215 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0400 -0.7211 -1.2494 6 6 3.5418 -0.6147 -1.3129 7 7 4.3886 -1.4590 -0.7906 8 6 5.6414 -1.0475 -1.0422 9 6 5.5761 0.0967 -1.7487 10 7 4.2443 0.3796 -1.9252 11 6 3.7188 1.4616 -2.5926 12 1 2.6480 1.5820 -2.6673 13 6 4.5653 2.4000 -3.1696 14 7 5.8672 2.2539 -3.0783 15 14 3.8517 3.8689 -4.0766 16 1 2.3687 3.8021 -4.0374 17 1 4.3078 5.1226 -3.4243 18 1 4.3114 3.8501 -5.4885 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5137 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 1.6963 -1.6480 1.2226 23 1 3.0262 -0.6500 1.2557 24 1 1.6053 -0.2616 -2.1370 25 1 1.7516 -1.7714 -1.2057 26 1 6.5463 -1.5483 -0.7311 27 1 6.4111 0.6805 -2.1071 28 1 6.4582 2.9088 -3.4815 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062802824.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:15 Heat of formation + Delta-G solvation = 39.515902 kcal Electronic energy + Delta-G solvation = -12393.743228 eV Core-core repulsion = 10251.878506 eV Total energy + Delta-G solvation = -2141.864722 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.38577 -35.97815 -34.00189 -30.90494 -29.37941 -28.41878 -25.73278 -24.85243 -20.51427 -20.11003 -18.97863 -17.47587 -15.63533 -15.37121 -14.47729 -14.07583 -13.86094 -13.07431 -12.81796 -12.45010 -12.01029 -11.88521 -11.54182 -11.41124 -11.30302 -10.96366 -10.68478 -10.59543 -10.38085 -9.75017 -8.49810 -8.38146 -8.18388 -6.79154 -6.74891 -4.53125 2.88229 2.98001 3.03620 3.71159 3.75688 4.53466 4.87929 4.99642 5.18898 5.45029 5.64804 5.91438 5.91991 6.14841 6.22672 6.35003 6.53207 6.66038 6.81430 6.95276 7.03878 7.48295 7.57897 7.75989 8.05899 8.26440 8.45582 8.76674 9.42645 9.72330 10.20018 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.033622 B = 0.013969 C = 0.010441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.581328 B = 2003.897478 C = 2681.150607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.090 3.910 3 H 0.078 0.922 4 N -0.840 5.840 5 C -0.043 4.043 6 C 0.089 3.911 7 N -0.515 5.515 8 C -0.106 4.106 9 C -0.053 4.053 10 N -0.263 5.263 11 C -0.332 4.332 12 H 0.110 0.890 13 C 0.041 3.959 14 N -0.842 5.842 15 Si 0.944 3.056 16 H -0.263 1.263 17 H -0.273 1.273 18 H -0.274 1.274 19 H 0.050 0.950 20 H 0.058 0.942 21 H 0.055 0.945 22 H 0.331 0.669 23 H 0.350 0.650 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.140 0.860 27 H 0.193 0.807 28 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.562 0.270 0.716 5.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 H 0.096 0.904 4 N -0.369 5.369 5 C -0.084 4.084 6 C -0.167 4.167 7 N -0.237 5.237 8 C -0.258 4.258 9 C -0.196 4.196 10 N 0.072 4.928 11 C -0.462 4.462 12 H 0.128 0.872 13 C -0.168 4.168 14 N -0.474 5.474 15 Si 0.769 3.231 16 H -0.187 1.187 17 H -0.198 1.198 18 H -0.199 1.199 19 H 0.069 0.931 20 H 0.077 0.923 21 H 0.075 0.925 22 H 0.142 0.858 23 H 0.164 0.836 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.158 0.842 27 H 0.209 0.791 28 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.133 0.370 1.406 6.303 hybrid contribution 0.741 0.777 -1.699 2.010 sum -5.392 1.147 -0.293 5.521 Atomic orbital electron populations 1.21783 0.95168 1.01382 1.01488 1.21392 0.94122 0.98610 0.88131 0.90408 1.59138 1.17711 1.20280 1.39779 1.20406 0.87875 1.00718 0.99373 1.22526 0.94487 0.91695 1.07983 1.69740 1.00401 1.28465 1.25078 1.21780 0.94552 0.99349 1.10137 1.23639 0.87860 1.00542 1.07543 1.41618 1.05553 1.14969 1.30695 1.20037 0.94191 0.99958 1.32026 0.87210 1.25548 0.95033 0.99646 0.96587 1.69737 1.02754 1.35054 1.39878 0.85583 0.79467 0.79318 0.78772 1.18683 1.19843 1.19897 0.93133 0.92337 0.92548 0.85813 0.83595 0.91362 0.91245 0.84202 0.79102 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.49 37.16 0.35 -1.67 15 2 C 0.09 1.63 3.40 -67.71 -0.23 1.40 15 3 H 0.08 1.58 8.14 -51.93 -0.42 1.16 15 4 N -0.84 -15.01 9.20 -4.67 -0.04 -15.05 15 5 C -0.04 -0.85 5.11 -27.88 -0.14 -0.99 15 6 C 0.09 2.19 6.47 -154.30 -1.00 1.20 15 7 N -0.52 -12.96 10.79 -10.52 -0.11 -13.07 15 8 C -0.11 -2.68 11.85 -17.77 -0.21 -2.89 15 9 C -0.05 -1.41 10.40 -16.38 -0.17 -1.58 15 10 N -0.26 -7.00 2.93 -58.87 -0.17 -7.17 15 11 C -0.33 -8.59 9.92 -14.72 -0.15 -8.74 15 12 H 0.11 2.65 7.07 -52.48 -0.37 2.28 15 13 C 0.04 1.01 5.48 -17.51 -0.10 0.92 15 14 N -0.84 -21.64 10.19 55.49 0.57 -21.08 15 15 Si 0.94 18.75 29.55 -169.99 -5.02 13.73 15 16 H -0.26 -5.05 7.11 56.52 0.40 -4.64 15 17 H -0.27 -5.38 7.11 56.52 0.40 -4.98 15 18 H -0.27 -5.38 7.11 56.52 0.40 -4.98 15 19 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 20 H 0.06 0.81 8.14 -51.93 -0.42 0.38 15 21 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.33 5.38 9.00 -39.29 -0.35 5.03 15 23 H 0.35 7.08 7.93 -39.29 -0.31 6.77 15 24 H 0.07 1.33 7.37 -51.93 -0.38 0.94 15 25 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 26 H 0.14 3.11 8.06 -52.49 -0.42 2.69 15 27 H 0.19 5.18 5.60 -52.48 -0.29 4.89 15 28 H 0.28 6.55 8.31 -40.82 -0.34 6.22 15 LS Contribution 240.12 15.07 3.62 3.62 Total: -1.00 -27.98 240.12 -6.19 -34.17 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -3.38 Total: 17.21 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -1.64 Total: -12.36 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.24 Total: -56.37 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.73 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -27.98 -6.19 -34.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062802824.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.691 kcal (2) G-P(sol) polarization free energy of solvation -27.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds