Wall clock time and date at job start Mon Mar 30 2020 01:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47461 * 2 1 4 4 H 1.09009 * 109.47077 * 54.99906 * 3 2 1 5 5 C 1.52997 * 109.47426 * 295.00081 * 3 2 1 6 6 C 1.50706 * 109.47411 * 174.99722 * 3 2 1 7 7 N 1.31396 * 125.15352 * 60.25950 * 6 3 2 8 8 N 1.40461 * 107.17386 * 180.15658 * 7 6 3 9 9 H 0.97003 * 127.00988 * 179.89137 * 8 7 6 10 10 C 1.37026 * 105.97136 * 359.62839 * 8 7 6 11 11 C 1.40369 * 126.31473 * 180.24307 * 10 8 7 12 12 H 1.07998 * 120.00376 * 353.39284 * 11 10 8 13 13 C 1.40270 * 119.99733 * 173.38783 * 11 10 8 14 14 N 1.30638 * 120.00013 * 178.11536 * 13 11 10 15 15 Si 1.86800 * 119.99870 * 358.11792 * 13 11 10 16 16 H 1.48502 * 109.47267 * 65.06542 * 15 13 11 17 17 H 1.48500 * 109.46870 * 185.06345 * 15 13 11 18 18 H 1.48496 * 109.47346 * 305.06452 * 15 13 11 19 19 N 1.32226 * 125.15960 * 240.00311 * 6 3 2 20 20 H 1.09000 * 109.46892 * 59.99794 * 1 2 3 21 21 H 1.08999 * 109.47740 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47283 * 299.99953 * 1 2 3 23 23 H 1.08999 * 109.47283 * 240.00047 * 2 1 3 24 24 H 1.09000 * 109.47417 * 120.00199 * 2 1 3 25 25 H 1.09004 * 109.47222 * 59.99488 * 5 3 2 26 26 H 1.08995 * 109.47587 * 179.97438 * 5 3 2 27 27 H 1.09009 * 109.46849 * 299.99964 * 5 3 2 28 28 H 0.97000 * 119.99875 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8419 5 6 1.6353 2.1266 -1.3073 6 6 3.5419 1.4442 0.1239 7 7 4.3720 0.8853 -0.7277 8 7 5.6726 1.1097 -0.2471 9 1 6.5037 0.8186 -0.6539 10 6 5.5281 1.8288 0.9103 11 6 6.5642 2.2872 1.7390 12 1 7.5839 1.9899 1.5434 13 6 6.2752 3.1315 2.8212 14 7 7.2343 3.5285 3.6143 15 14 4.5187 3.6883 3.1283 16 1 3.6812 2.5133 3.4795 17 1 4.4973 4.6638 4.2476 18 1 3.9813 4.3303 1.9018 19 7 4.2245 2.0126 1.1034 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 0.5489 2.1253 -1.3969 26 1 1.9983 3.1543 -1.3071 27 1 2.0699 1.5875 -2.1492 28 1 7.0344 4.1121 4.3629 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070584231.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:28 Heat of formation + Delta-G solvation = 21.204599 kcal Electronic energy + Delta-G solvation = -12228.908651 eV Core-core repulsion = 10086.249891 eV Total energy + Delta-G solvation = -2142.658760 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.10841 -37.32768 -35.61033 -32.74120 -32.24677 -30.22587 -27.88145 -25.93460 -23.06184 -22.23696 -20.20266 -19.27996 -18.36652 -16.66833 -15.94294 -15.77199 -15.50376 -14.83128 -14.39388 -14.18496 -13.55852 -13.11725 -12.93692 -12.91215 -12.69737 -12.50408 -12.02048 -11.88568 -11.71571 -11.48265 -11.34248 -10.51354 -10.16020 -9.97793 -8.98143 -6.96828 1.00322 1.46463 1.63942 1.66856 2.26573 2.34827 2.52821 3.13299 3.55526 3.91505 4.15040 4.42616 4.43623 4.62903 4.69541 4.76494 4.93622 5.01126 5.15878 5.17211 5.19298 5.42407 5.52974 5.65867 5.83968 6.00125 6.29298 6.47015 6.99683 7.81209 8.03605 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.046101 B = 0.012162 C = 0.010531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.219448 B = 2301.723726 C = 2658.102279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 C -0.002 4.002 4 H 0.081 0.919 5 C -0.129 4.129 6 C 0.234 3.766 7 N -0.395 5.395 8 N -0.550 5.550 9 H 0.434 0.566 10 C 0.387 3.613 11 C -0.453 4.453 12 H 0.089 0.911 13 C 0.074 3.926 14 N -0.822 5.822 15 Si 1.036 2.964 16 H -0.277 1.277 17 H -0.306 1.306 18 H -0.284 1.284 19 N -0.661 5.661 20 H 0.072 0.928 21 H 0.067 0.933 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.041 0.959 25 H 0.096 0.904 26 H 0.038 0.962 27 H 0.055 0.945 28 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.334 -2.443 -4.456 11.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.142 4.142 3 C -0.023 4.023 4 H 0.100 0.900 5 C -0.187 4.187 6 C -0.049 4.049 7 N -0.228 5.228 8 N -0.270 5.270 9 H 0.279 0.721 10 C 0.137 3.863 11 C -0.494 4.494 12 H 0.107 0.893 13 C -0.149 4.149 14 N -0.449 5.449 15 Si 0.868 3.132 16 H -0.204 1.204 17 H -0.237 1.237 18 H -0.211 1.211 19 N -0.403 5.403 20 H 0.091 0.909 21 H 0.086 0.914 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.060 0.940 25 H 0.114 0.886 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.579 -2.584 -4.700 11.861 hybrid contribution 0.937 0.103 0.179 0.959 sum -9.642 -2.481 -4.521 10.935 Atomic orbital electron populations 1.21778 0.92738 1.02682 1.02808 1.21425 0.97793 0.93661 1.01368 1.19686 0.83414 0.98820 1.00385 0.90039 1.21747 1.02748 0.99141 0.95057 1.24350 0.98208 0.93410 0.88919 1.77583 0.87777 1.32449 1.25011 1.47653 1.07061 1.50853 1.21396 0.72117 1.20980 0.91625 0.87945 0.85724 1.18349 0.93326 1.28041 1.09717 0.89268 1.26528 1.03496 0.92238 0.92599 1.69466 1.36463 1.26081 1.12861 0.84130 0.76706 0.76889 0.75461 1.20380 1.23698 1.21114 1.69596 1.02297 1.36987 1.31387 0.90865 0.91425 0.92329 0.91875 0.94025 0.88580 0.94230 0.92577 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.67 71.98 0.70 -2.34 15 2 C -0.10 -3.12 5.38 30.59 0.16 -2.96 15 3 C 0.00 -0.07 2.86 -11.54 -0.03 -0.10 15 4 H 0.08 2.92 8.14 -2.38 -0.02 2.90 15 5 C -0.13 -3.81 8.93 71.98 0.64 -3.17 15 6 C 0.23 10.95 6.59 138.74 0.91 11.86 15 7 N -0.40 -18.58 12.80 -51.55 -0.66 -19.24 15 8 N -0.55 -26.14 7.58 -55.51 -0.42 -26.56 15 9 H 0.43 17.64 8.96 -213.08 -1.91 15.73 15 10 C 0.39 20.53 7.45 133.83 1.00 21.53 15 11 C -0.45 -24.76 10.06 23.28 0.23 -24.52 15 12 H 0.09 4.88 8.06 -2.91 -0.02 4.86 15 13 C 0.07 3.95 5.52 85.36 0.47 4.42 15 14 N -0.82 -43.32 13.92 21.88 0.30 -43.02 15 15 Si 1.04 50.11 25.36 68.60 1.74 51.85 15 16 H -0.28 -13.95 7.05 99.48 0.70 -13.25 15 17 H -0.31 -13.59 7.11 99.48 0.71 -12.89 15 18 H -0.28 -14.45 7.01 99.48 0.70 -13.76 15 19 N -0.66 -34.95 6.52 -185.91 -1.21 -36.16 15 20 H 0.07 1.32 6.56 -2.39 -0.02 1.30 15 21 H 0.07 1.24 8.14 -2.39 -0.02 1.22 15 22 H 0.06 1.20 8.14 -2.39 -0.02 1.18 15 23 H 0.06 1.93 8.14 -2.39 -0.02 1.91 15 24 H 0.04 1.38 8.14 -2.39 -0.02 1.36 15 25 H 0.10 2.09 6.57 -2.38 -0.02 2.07 15 26 H 0.04 1.26 8.14 -2.39 -0.02 1.24 15 27 H 0.06 1.70 8.14 -2.38 -0.02 1.68 15 28 H 0.30 14.39 8.29 -92.71 -0.77 13.62 15 Total: -1.00 -62.30 239.25 3.07 -59.22 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -0.76 Total: 9.19 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 4.09 Total: 4.72 kcal Atomic # 7 Polarization: -122.99 SS G_CDS: -1.99 Total: -124.98 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 1.74 Total: 51.85 kcal Total: -62.30 3.07 -59.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070584231.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.426 kcal (2) G-P(sol) polarization free energy of solvation -62.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds