Wall clock time and date at job start Mon Mar 30 2020 02:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.39989 * 120.00408 * 275.00502 * 12 2 1 14 14 C 1.40422 * 125.97488 * 359.97438 * 13 12 2 15 15 C 1.35245 * 107.86540 * 179.97438 * 14 13 12 16 16 N 1.34966 * 107.86404 * 359.97438 * 15 14 13 17 17 C 1.46491 * 125.97745 * 180.02562 * 16 15 14 18 18 N 1.31227 * 125.97484 * 179.69238 * 13 12 2 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 22 22 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 23 23 H 0.97006 * 119.99921 * 94.99902 * 12 2 1 24 24 H 1.08002 * 126.06788 * 0.02562 * 14 13 12 25 25 H 1.08000 * 126.07153 * 180.02562 * 15 14 13 26 26 H 1.08999 * 109.46931 * 90.00058 * 17 16 15 27 27 H 1.08993 * 109.47854 * 210.00344 * 17 16 15 28 28 H 1.09002 * 109.47390 * 330.00521 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1519 0.0078 2.4021 14 6 1.8564 1.3653 2.6063 15 6 2.1170 1.6565 3.9011 16 7 2.5602 0.5299 4.4977 17 6 2.9568 0.3984 5.9017 18 7 2.5704 -0.4929 3.5406 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 0.7089 1.1612 -3.4844 23 1 2.2490 -1.6317 1.1527 24 1 1.4858 2.0544 1.8618 25 1 1.9919 2.6194 4.3739 26 1 2.0895 0.1182 6.4995 27 1 3.7241 -0.3703 5.9922 28 1 3.3518 1.3498 6.2583 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078514322.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:52 Heat of formation + Delta-G solvation = 81.389736 kcal Electronic energy + Delta-G solvation = -11967.533888 eV Core-core repulsion = 9827.484951 eV Total energy + Delta-G solvation = -2140.048937 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.31816 -35.69549 -33.02586 -31.40203 -29.58609 -28.03496 -25.54418 -24.96663 -21.20154 -20.34540 -19.06536 -16.82934 -16.30106 -14.92169 -14.85059 -14.68997 -13.53816 -13.34568 -12.68775 -12.48561 -12.20672 -11.96357 -11.68814 -11.06707 -10.96770 -10.70190 -10.26277 -10.15219 -9.74093 -9.41277 -8.95380 -8.44537 -8.05229 -6.62628 -6.08067 -4.14967 2.55116 3.06173 3.30490 3.34557 3.37695 3.85588 4.34305 4.66958 5.03754 5.24488 5.28479 5.35496 5.55351 6.10122 6.42680 6.46780 6.83416 7.02930 7.09049 7.21459 7.58194 7.66004 7.77371 7.93324 8.08927 8.24744 8.73839 8.87457 9.16756 9.52489 10.98124 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.079977 B = 0.007934 C = 0.007594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.017491 B = 3528.404236 C = 3686.429544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.283 3.717 3 H 0.037 0.963 4 C -0.527 4.527 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.888 5.888 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.704 5.704 13 C 0.354 3.646 14 C -0.297 4.297 15 C 0.061 3.939 16 N -0.396 5.396 17 C 0.116 3.884 18 N -0.384 5.384 19 H 0.027 0.973 20 H 0.088 0.912 21 H 0.012 0.988 22 H 0.264 0.736 23 H 0.391 0.609 24 H 0.143 0.857 25 H 0.164 0.836 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.523 1.895 10.929 11.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.180 3.820 3 H 0.055 0.945 4 C -0.565 4.565 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.341 5.341 13 C 0.094 3.906 14 C -0.330 4.330 15 C -0.084 4.084 16 N -0.179 5.179 17 C -0.026 4.026 18 N -0.219 5.219 19 H 0.046 0.954 20 H 0.107 0.893 21 H 0.031 0.969 22 H 0.074 0.926 23 H 0.225 0.775 24 H 0.161 0.839 25 H 0.181 0.819 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.813 1.164 11.387 11.589 hybrid contribution 0.041 0.036 -1.213 1.214 sum 1.854 1.200 10.174 10.411 Atomic orbital electron populations 1.22201 0.99107 0.99408 1.00378 1.18595 0.90375 0.93126 0.79873 0.94518 1.21206 1.31922 1.13164 0.90249 0.92124 1.24856 0.94872 0.95023 0.98939 1.69872 1.36212 1.22669 1.23875 0.86508 0.79180 0.79652 0.81766 1.20195 1.21189 1.20203 1.44689 1.72469 1.11811 1.05140 1.19573 0.92583 0.90890 0.87514 1.21176 1.18642 0.96417 0.96795 1.22232 1.00119 0.92241 0.93827 1.47829 1.54574 1.06794 1.08697 1.21546 1.00693 1.03005 0.77393 1.77401 1.36433 1.10803 0.97293 0.95362 0.89298 0.96894 0.92632 0.77543 0.83901 0.81890 0.92005 0.90157 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.28 37.16 0.34 -3.41 15 2 C 0.28 7.24 2.56 -69.09 -0.18 7.06 15 3 H 0.04 1.02 7.14 -51.93 -0.37 0.64 15 4 C -0.53 -14.35 8.73 -34.44 -0.30 -14.65 15 5 H 0.06 1.63 7.74 -52.49 -0.41 1.22 15 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 15 7 N -0.89 -24.79 11.32 55.43 0.63 -24.16 15 8 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 15 9 H -0.28 -6.39 7.11 56.52 0.40 -5.98 15 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 12 N -0.70 -16.41 5.28 -54.70 -0.29 -16.70 15 13 C 0.35 7.84 8.14 -154.55 -1.26 6.58 15 14 C -0.30 -5.92 9.92 -39.83 -0.40 -6.32 15 15 C 0.06 0.99 11.48 -17.24 -0.20 0.79 15 16 N -0.40 -6.65 4.01 -68.19 -0.27 -6.93 15 17 C 0.12 1.27 11.47 59.84 0.69 1.95 15 18 N -0.38 -8.06 12.59 31.41 0.40 -7.66 15 19 H 0.03 0.68 8.14 -51.93 -0.42 0.25 15 20 H 0.09 2.35 6.07 -51.93 -0.32 2.04 15 21 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 15 22 H 0.26 7.01 8.31 -40.82 -0.34 6.67 15 23 H 0.39 8.81 8.67 -40.82 -0.35 8.46 15 24 H 0.14 2.85 7.45 -52.49 -0.39 2.46 15 25 H 0.16 1.85 8.06 -52.49 -0.42 1.43 15 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 15 27 H 0.08 0.85 8.14 -51.93 -0.42 0.43 15 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 15 LS Contribution 245.07 15.07 3.69 3.69 Total: -1.00 -30.68 245.07 -5.77 -36.45 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -3.51 Total: 5.60 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -1.39 Total: -6.31 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: 0.46 Total: -55.44 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -30.68 -5.77 -36.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078514322.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.842 kcal (2) G-P(sol) polarization free energy of solvation -30.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds