Wall clock time and date at job start Mon Mar 30 2020 02:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.39989 * 120.00408 * 275.00502 * 12 2 1 14 14 C 1.40422 * 125.97488 * 359.97438 * 13 12 2 15 15 C 1.35245 * 107.86540 * 179.97438 * 14 13 12 16 16 N 1.34966 * 107.86404 * 359.97438 * 15 14 13 17 17 C 1.46491 * 125.97745 * 180.02562 * 16 15 14 18 18 N 1.31227 * 125.97484 * 179.69238 * 13 12 2 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 22 22 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 23 23 H 0.97006 * 119.99921 * 94.99902 * 12 2 1 24 24 H 1.08002 * 126.06788 * 0.02562 * 14 13 12 25 25 H 1.08000 * 126.07153 * 180.02562 * 15 14 13 26 26 H 1.08999 * 109.46931 * 90.00058 * 17 16 15 27 27 H 1.08993 * 109.47854 * 210.00344 * 17 16 15 28 28 H 1.09002 * 109.47390 * 330.00521 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1519 0.0078 2.4021 14 6 1.8564 1.3653 2.6063 15 6 2.1170 1.6565 3.9011 16 7 2.5602 0.5299 4.4977 17 6 2.9568 0.3984 5.9017 18 7 2.5704 -0.4929 3.5406 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 0.7089 1.1612 -3.4844 23 1 2.2490 -1.6317 1.1527 24 1 1.4858 2.0544 1.8618 25 1 1.9919 2.6194 4.3739 26 1 2.0895 0.1182 6.4995 27 1 3.7241 -0.3703 5.9922 28 1 3.3518 1.3498 6.2583 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078514322.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:52 Heat of formation + Delta-G solvation = 61.093982 kcal Electronic energy + Delta-G solvation = -11968.413978 eV Core-core repulsion = 9827.484951 eV Total energy + Delta-G solvation = -2140.929027 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.76251 -37.53053 -34.79934 -32.98665 -31.09388 -29.79662 -27.36052 -26.49669 -23.01508 -21.79790 -20.72561 -18.63448 -17.85174 -16.83944 -16.29395 -16.15934 -15.35783 -14.76665 -14.16189 -14.11460 -13.64775 -13.42354 -13.16456 -12.91175 -12.83423 -12.61499 -12.22683 -12.08878 -11.29560 -11.11666 -10.90849 -10.49420 -9.52132 -8.30138 -8.13614 -6.29907 1.19468 1.44997 1.46713 1.54350 1.80038 2.25111 2.42236 3.04710 3.15502 3.99834 4.20302 4.57142 4.69911 4.78230 4.84446 4.93226 5.02986 5.07790 5.16731 5.41149 5.57285 5.74614 5.91607 6.13132 6.38651 6.48133 6.78380 7.08728 7.33659 7.49655 8.90576 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.079977 B = 0.007934 C = 0.007594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.017491 B = 3528.404236 C = 3686.429544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.294 3.706 3 H 0.009 0.991 4 C -0.549 4.549 5 H 0.058 0.942 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.967 3.033 9 H -0.271 1.271 10 H -0.280 1.280 11 H -0.273 1.273 12 N -0.713 5.713 13 C 0.327 3.673 14 C -0.343 4.343 15 C 0.094 3.906 16 N -0.389 5.389 17 C 0.103 3.897 18 N -0.411 5.411 19 H 0.025 0.975 20 H 0.070 0.930 21 H 0.022 0.978 22 H 0.267 0.733 23 H 0.390 0.610 24 H 0.130 0.870 25 H 0.220 0.780 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.998 2.273 12.353 12.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.190 3.810 3 H 0.026 0.974 4 C -0.588 4.588 5 H 0.077 0.923 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.792 3.208 9 H -0.196 1.196 10 H -0.205 1.205 11 H -0.199 1.199 12 N -0.351 5.351 13 C 0.069 3.931 14 C -0.375 4.375 15 C -0.053 4.053 16 N -0.172 5.172 17 C -0.037 4.037 18 N -0.246 5.246 19 H 0.044 0.956 20 H 0.089 0.911 21 H 0.041 0.959 22 H 0.076 0.924 23 H 0.224 0.776 24 H 0.148 0.852 25 H 0.236 0.764 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.301 1.525 12.861 13.154 hybrid contribution -0.074 -0.029 -1.453 1.455 sum 2.227 1.496 11.408 11.719 Atomic orbital electron populations 1.22005 0.98756 0.98975 0.99841 1.18258 0.90513 0.91647 0.80573 0.97360 1.21500 1.32428 1.13463 0.91388 0.92335 1.25652 0.94900 0.95666 1.01733 1.69987 1.36780 1.23644 1.24648 0.85483 0.78588 0.78650 0.78105 1.19566 1.20506 1.19876 1.44398 1.73553 1.11716 1.05426 1.19792 0.93961 0.91923 0.87391 1.21277 1.21817 0.95641 0.98791 1.22896 0.96458 0.93687 0.92309 1.48340 1.52847 1.06010 1.09971 1.22067 1.01788 1.05623 0.74222 1.77278 1.36546 1.13052 0.97751 0.95561 0.91136 0.95933 0.92421 0.77640 0.85173 0.76352 0.90081 0.90041 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.94 9.28 71.98 0.67 -6.27 15 2 C 0.29 15.55 2.56 44.24 0.11 15.66 15 3 H 0.01 0.50 7.14 -2.39 -0.02 0.48 15 4 C -0.55 -30.57 8.73 25.60 0.22 -30.35 15 5 H 0.06 3.20 7.74 -2.91 -0.02 3.17 15 6 C 0.02 1.14 5.30 84.66 0.45 1.59 15 7 N -0.91 -51.64 11.32 21.45 0.24 -51.40 15 8 Si 0.97 43.21 29.54 68.60 2.03 45.23 15 9 H -0.27 -11.77 7.11 99.48 0.71 -11.07 15 10 H -0.28 -12.13 7.11 99.48 0.71 -11.42 15 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 15 12 N -0.71 -34.31 5.28 -326.99 -1.73 -36.03 15 13 C 0.33 14.66 8.14 133.38 1.09 15.74 15 14 C -0.34 -13.57 9.92 22.11 0.22 -13.35 15 15 C 0.09 2.75 11.48 83.52 0.96 3.71 15 16 N -0.39 -11.97 4.01 -369.64 -1.48 -13.45 15 17 C 0.10 1.82 11.47 127.77 1.46 3.28 15 18 N -0.41 -16.96 12.59 -54.55 -0.69 -17.65 15 19 H 0.03 1.28 8.14 -2.39 -0.02 1.26 15 20 H 0.07 3.84 6.07 -2.39 -0.01 3.82 15 21 H 0.02 1.05 8.14 -2.38 -0.02 1.03 15 22 H 0.27 14.26 8.31 -92.71 -0.77 13.49 15 23 H 0.39 18.23 8.67 -92.70 -0.80 17.43 15 24 H 0.13 5.36 7.45 -2.91 -0.02 5.34 15 25 H 0.22 3.77 8.06 -2.91 -0.02 3.74 15 26 H 0.08 1.19 8.14 -2.39 -0.02 1.17 15 27 H 0.08 1.46 8.14 -2.39 -0.02 1.44 15 28 H 0.12 1.18 8.14 -2.39 -0.02 1.16 15 Total: -1.00 -67.46 245.07 3.91 -63.56 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.35 Total: 19.74 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: 5.18 Total: -9.99 kcal Atomic # 7 Polarization: -114.88 SS G_CDS: -3.65 Total: -118.53 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -67.46 3.91 -63.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078514322.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.649 kcal (2) G-P(sol) polarization free energy of solvation -67.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds