Wall clock time and date at job start Mon Mar 30 2020 02:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46857 * 2 1 4 4 C 1.50703 * 109.46888 * 240.01057 * 2 1 3 5 5 H 1.08005 * 119.99551 * 274.99894 * 4 2 1 6 6 C 1.37868 * 120.00466 * 94.99873 * 4 2 1 7 7 N 1.31512 * 120.00019 * 184.91276 * 6 4 2 8 8 Si 1.86802 * 120.00167 * 4.91686 * 6 4 2 9 9 H 1.48496 * 109.47292 * 84.83080 * 8 6 4 10 10 H 1.48494 * 109.47356 * 204.83526 * 8 6 4 11 11 H 1.48500 * 109.46883 * 324.83313 * 8 6 4 12 12 N 1.46494 * 109.47339 * 120.00774 * 2 1 3 13 13 C 1.40798 * 119.99750 * 274.99861 * 12 2 1 14 14 C 1.40223 * 126.07086 * 359.68667 * 13 12 2 15 15 N 1.30866 * 108.36771 * 179.87880 * 14 13 12 16 16 N 1.40075 * 108.35488 * 0.38564 * 15 14 13 17 17 C 1.46499 * 126.06607 * 179.73679 * 16 15 14 18 18 C 1.35708 * 126.06626 * 180.02562 * 13 12 2 19 19 H 1.08997 * 109.46675 * 295.02762 * 1 2 3 20 20 H 1.08995 * 109.47229 * 175.02899 * 1 2 3 21 21 H 1.08997 * 109.46788 * 55.02174 * 1 2 3 22 22 H 0.97006 * 119.99713 * 179.97438 * 7 6 4 23 23 H 0.96999 * 120.00270 * 95.00283 * 12 2 1 24 24 H 1.07998 * 125.81390 * 0.02562 * 14 13 12 25 25 H 1.08998 * 109.47325 * 270.02127 * 17 16 15 26 26 H 1.08998 * 109.47379 * 30.02242 * 17 16 15 27 27 H 1.09002 * 109.47467 * 150.02255 * 17 16 15 28 28 H 1.07994 * 126.22478 * 359.94286 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7102 -1.2306 5 1 2.1355 -1.7853 -1.2293 6 6 2.3602 0.0124 -2.3581 7 7 2.7059 -0.6128 -3.4623 8 14 2.3136 1.8793 -2.3173 9 1 3.5991 2.3951 -1.7821 10 1 2.1057 2.3995 -3.6926 11 1 1.1987 2.3277 -1.4448 12 7 2.0184 -0.6907 1.1960 13 6 2.1529 0.0116 2.4089 14 6 1.8638 1.3683 2.6138 15 7 2.1097 1.6577 3.8662 16 7 2.5726 0.4997 4.5039 17 6 2.9673 0.3888 5.9103 18 6 2.5915 -0.5029 3.5856 19 1 -0.3632 0.4348 0.9312 20 1 -0.3633 -1.0237 -0.0890 21 1 -0.3633 0.5891 -0.8420 22 1 2.9362 -0.1043 -4.2557 23 1 2.2492 -1.6319 1.1524 24 1 1.4982 2.0564 1.8661 25 1 4.0303 0.6091 6.0079 26 1 2.3930 1.0983 6.5059 27 1 2.7723 -0.6238 6.2637 28 1 2.8990 -1.5232 3.7609 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082403657.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:03 Heat of formation + Delta-G solvation = 59.066652 kcal Electronic energy + Delta-G solvation = -12029.099822 eV Core-core repulsion = 9888.082883 eV Total energy + Delta-G solvation = -2141.016938 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.79506 -37.41893 -34.58609 -33.48683 -31.86629 -29.02972 -27.33494 -26.64423 -22.82633 -21.87152 -20.81418 -19.21377 -17.81078 -16.85885 -16.16390 -15.88620 -15.36958 -15.15700 -14.51770 -14.13959 -13.81211 -13.52270 -13.32736 -13.13681 -12.86652 -12.62258 -12.17741 -11.81312 -11.64912 -11.11892 -10.88562 -10.61903 -10.13460 -8.31309 -7.71613 -6.36779 1.02722 1.36609 1.38700 1.47976 1.82573 2.15479 2.33860 2.93000 3.25745 3.97796 4.16186 4.41322 4.55275 4.55745 4.77080 4.81397 4.90076 4.95200 4.99559 5.13834 5.54308 5.58250 5.61852 6.13500 6.33594 6.66824 6.77479 6.96218 7.30286 7.44467 8.84978 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.057388 B = 0.009435 C = 0.009001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.793425 B = 2967.032348 C = 3110.169084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.027 0.973 4 C -0.523 4.523 5 H 0.041 0.959 6 C 0.021 3.979 7 N -0.942 5.942 8 Si 0.935 3.065 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.241 1.241 12 N -0.733 5.733 13 C 0.056 3.944 14 C -0.016 4.016 15 N -0.306 5.306 16 N -0.378 5.378 17 C 0.103 3.897 18 C -0.043 4.043 19 H 0.044 0.956 20 H 0.043 0.957 21 H 0.044 0.956 22 H 0.268 0.732 23 H 0.393 0.607 24 H 0.173 0.827 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.111 0.889 28 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.663 2.314 15.820 16.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.152 3.848 3 H 0.045 0.955 4 C -0.561 4.561 5 H 0.059 0.941 6 C -0.178 4.178 7 N -0.582 5.582 8 Si 0.759 3.241 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.164 1.164 12 N -0.368 5.368 13 C -0.053 4.053 14 C -0.202 4.202 15 N -0.131 5.131 16 N -0.168 5.168 17 C -0.036 4.036 18 C -0.191 4.191 19 H 0.063 0.937 20 H 0.062 0.938 21 H 0.063 0.937 22 H 0.077 0.923 23 H 0.226 0.774 24 H 0.190 0.810 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.129 0.871 28 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -0.648 3.371 16.548 16.900 hybrid contribution 0.232 -0.427 -1.332 1.418 sum -0.416 2.945 15.216 15.504 Atomic orbital electron populations 1.22234 0.98305 1.00623 0.99334 1.18625 0.90912 0.92406 0.82904 0.95478 1.21300 1.43688 0.94395 0.96737 0.94053 1.25772 0.93886 1.03321 0.94775 1.70027 1.47568 1.37969 1.02607 0.85923 0.80035 0.80331 0.77790 1.19801 1.20990 1.16435 1.44329 1.75696 1.11446 1.05315 1.18244 1.06019 0.92391 0.88653 1.23566 1.06387 0.95620 0.94665 1.77011 1.20151 1.08705 1.07238 1.48419 1.52248 1.05670 1.10414 1.22071 1.01593 1.05373 0.74601 1.22024 1.12029 0.96454 0.88624 0.93737 0.93766 0.93657 0.92329 0.77364 0.81016 0.90127 0.89148 0.87055 0.78626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.09 9.49 71.98 0.68 -5.41 15 2 C 0.26 11.83 2.24 44.25 0.10 11.93 15 3 H 0.03 1.28 4.30 -2.39 -0.01 1.27 15 4 C -0.52 -28.92 9.05 25.60 0.23 -28.69 15 5 H 0.04 2.51 8.06 -2.91 -0.02 2.49 15 6 C 0.02 1.20 5.47 84.65 0.46 1.66 15 7 N -0.94 -57.56 13.96 21.44 0.30 -57.26 15 8 Si 0.94 43.52 26.99 68.60 1.85 45.37 15 9 H -0.27 -12.55 7.11 99.48 0.71 -11.84 15 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 15 11 H -0.24 -10.28 6.82 99.48 0.68 -9.60 15 12 N -0.73 -29.94 5.31 -323.01 -1.71 -31.66 15 13 C 0.06 2.06 6.94 37.60 0.26 2.32 15 14 C -0.02 -0.58 11.15 85.32 0.95 0.37 15 15 N -0.31 -10.68 12.57 -56.77 -0.71 -11.39 15 16 N -0.38 -10.72 4.04 -368.39 -1.49 -12.21 15 17 C 0.10 1.68 11.48 127.77 1.47 3.15 15 18 C -0.04 -1.28 11.57 83.47 0.97 -0.32 15 19 H 0.04 1.67 8.14 -2.39 -0.02 1.66 15 20 H 0.04 1.84 8.14 -2.39 -0.02 1.82 15 21 H 0.04 1.88 8.14 -2.39 -0.02 1.86 15 22 H 0.27 15.33 8.31 -92.70 -0.77 14.56 15 23 H 0.39 15.41 8.72 -92.71 -0.81 14.61 15 24 H 0.17 6.25 7.44 -2.91 -0.02 6.23 15 25 H 0.08 1.11 8.14 -2.39 -0.02 1.09 15 26 H 0.09 1.33 8.14 -2.39 -0.02 1.31 15 27 H 0.11 1.15 8.14 -2.39 -0.02 1.13 15 28 H 0.20 4.39 8.06 -2.91 -0.02 4.37 15 Total: -1.00 -67.14 245.03 3.67 -63.46 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.32 Total: 18.67 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: 5.12 Total: -14.98 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -3.62 Total: -112.52 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.85 Total: 45.37 kcal Total: -67.14 3.67 -63.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082403657.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.530 kcal (2) G-P(sol) polarization free energy of solvation -67.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds