Wall clock time and date at job start Mon Mar 30 2020 02:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00214 * 2 1 4 4 H 1.48497 * 109.46961 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47039 * 300.00023 * 3 2 1 6 6 H 1.48498 * 109.47166 * 59.99804 * 3 2 1 7 7 C 1.38811 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00076 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00505 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00173 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47091 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.44925 * 308.56979 * 11 10 9 13 13 C 1.54587 * 110.40069 * 70.95701 * 11 10 9 14 14 C 1.55927 * 104.64137 * 118.79407 * 13 11 10 15 15 H 1.09007 * 116.52633 * 160.39346 * 14 13 11 16 16 C 1.55923 * 104.49894 * 289.71755 * 14 13 11 17 17 C 1.54587 * 104.64380 * 70.27766 * 16 14 13 18 18 C 1.55926 * 104.64060 * 0.02562 * 17 16 14 19 19 H 1.09003 * 115.92317 * 160.02930 * 18 17 16 20 20 C 1.56946 * 100.65392 * 33.77660 * 14 13 11 21 21 H 0.97001 * 120.00227 * 0.02562 * 1 2 3 22 22 H 0.97001 * 119.99411 * 359.97438 * 9 7 2 23 23 H 1.08996 * 109.47640 * 59.99717 * 10 9 7 24 24 H 1.09003 * 109.47350 * 299.99550 * 10 9 7 25 25 H 1.08997 * 110.39965 * 0.02562 * 13 11 10 26 26 H 1.09001 * 110.39594 * 237.58468 * 13 11 10 27 27 H 1.09002 * 110.40564 * 311.49363 * 16 14 13 28 28 H 1.08993 * 110.50516 * 189.12037 * 16 14 13 29 29 H 1.09007 * 110.39901 * 118.78824 * 17 16 14 30 30 H 1.08991 * 110.40557 * 241.20951 * 17 16 14 31 31 H 1.09003 * 112.02743 * 63.17602 * 20 14 13 32 32 H 1.08997 * 112.02891 * 189.62157 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 6 1.0637 -4.8197 0.0021 12 1 0.3319 -4.6949 0.8002 13 6 0.3547 -4.9230 -1.3678 14 6 0.7441 -6.3330 -1.9078 15 1 0.1071 -6.7482 -2.6888 16 6 2.2592 -6.2128 -2.2562 17 6 2.9682 -6.1094 -0.8865 18 6 1.8148 -6.1776 0.1605 19 1 2.1061 -6.4576 1.1729 20 6 0.8183 -7.1466 -0.5678 21 1 -0.4850 0.8400 -0.0004 22 1 0.3554 -2.3881 0.0005 23 1 2.6839 -3.7142 0.8921 24 1 2.6852 -3.7150 -0.8878 25 1 0.7148 -4.1456 -2.0415 26 1 -0.7256 -4.8490 -1.2429 27 1 2.4431 -5.3159 -2.8478 28 1 2.5987 -7.0980 -2.7940 29 1 3.6547 -6.9450 -0.7499 30 1 3.5006 -5.1619 -0.8047 31 1 -0.1473 -7.1942 -0.0644 32 1 1.2455 -8.1386 -0.7149 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082527832.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:03 Heat of formation + Delta-G solvation = 3.766279 kcal Electronic energy + Delta-G solvation = -12621.720365 eV Core-core repulsion = 10581.845766 eV Total energy + Delta-G solvation = -2039.874599 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.05925 -34.50284 -31.55629 -29.66360 -29.03007 -27.69989 -24.42622 -22.31145 -21.06450 -19.71464 -18.02803 -16.94859 -16.00724 -15.13653 -14.57688 -14.06323 -13.08263 -12.93473 -12.71194 -12.18927 -11.62714 -11.29210 -11.11979 -10.98686 -10.84285 -10.77208 -10.62723 -10.39810 -10.15839 -10.06902 -9.71037 -9.56652 -9.46740 -8.79266 -6.83117 -5.70873 -2.98441 3.46309 3.51698 3.54130 4.62025 4.76184 4.78093 4.83588 5.47270 5.47932 5.53977 5.62650 5.65195 5.76461 5.79285 5.90054 5.97568 6.01110 6.15744 6.28309 6.36584 6.39754 6.41985 6.53262 6.61737 6.70221 6.76373 6.92789 7.09326 7.75527 8.48752 9.59446 10.20240 10.54855 11.52334 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.067684 B = 0.008382 C = 0.008120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.585850 B = 3339.796251 C = 3447.557250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.017 4.017 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.069 0.931 9 N -0.733 5.733 10 C 0.158 3.842 11 C -0.094 4.094 12 H 0.069 0.931 13 C -0.110 4.110 14 C -0.108 4.108 15 H 0.090 0.910 16 C -0.118 4.118 17 C -0.129 4.129 18 C -0.097 4.097 19 H 0.092 0.908 20 C -0.124 4.124 21 H 0.253 0.747 22 H 0.383 0.617 23 H 0.014 0.986 24 H 0.025 0.975 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.568 -13.604 -2.309 14.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.377 5.377 10 C 0.031 3.969 11 C -0.113 4.113 12 H 0.087 0.913 13 C -0.148 4.148 14 C -0.126 4.126 15 H 0.108 0.892 16 C -0.156 4.156 17 C -0.166 4.166 18 C -0.116 4.116 19 H 0.110 0.890 20 C -0.162 4.162 21 H 0.063 0.937 22 H 0.216 0.784 23 H 0.032 0.968 24 H 0.043 0.957 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.726 -13.467 -2.316 13.934 hybrid contribution 0.126 1.009 0.023 1.017 sum 2.852 -12.458 -2.293 12.984 Atomic orbital electron populations 1.69673 1.05081 1.25380 1.58202 1.24734 0.95524 0.97634 1.03357 0.86128 0.78773 0.84254 0.77151 1.20608 1.21925 1.21925 1.19297 0.91028 0.84307 1.42037 0.91259 1.42418 1.05898 1.00070 1.89306 1.20834 0.93268 0.85262 0.97514 1.22342 0.97616 0.94074 0.97240 0.91294 1.22635 0.99549 0.95783 0.96816 1.23574 0.96126 0.96354 0.96531 0.89191 1.22575 0.94998 1.00927 0.97074 1.22762 0.97368 1.01970 0.94546 1.23525 0.95332 0.95123 0.97604 0.88976 1.23554 0.99000 0.97376 0.96261 0.93664 0.78357 0.96790 0.95727 0.90834 0.92470 0.91716 0.92742 0.92790 0.90328 0.91661 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.95 13.06 55.49 0.72 -28.23 16 2 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 3 Si 0.91 22.92 29.55 -169.99 -5.02 17.90 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 9 N -0.73 -19.30 5.50 -59.91 -0.33 -19.63 16 10 C 0.16 3.34 4.51 -4.04 -0.02 3.32 16 11 C -0.09 -1.63 2.71 -88.19 -0.24 -1.87 16 12 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 13 C -0.11 -1.83 5.73 -24.33 -0.14 -1.96 16 14 C -0.11 -1.45 5.19 -85.36 -0.44 -1.89 16 15 H 0.09 1.08 8.14 -51.92 -0.42 0.66 16 16 C -0.12 -1.58 6.21 -24.34 -0.15 -1.73 16 17 C -0.13 -1.77 5.86 -24.33 -0.14 -1.92 16 18 C -0.10 -1.37 4.93 -85.34 -0.42 -1.79 16 19 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 20 C -0.12 -1.57 6.42 -22.47 -0.14 -1.71 16 21 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 22 H 0.38 10.59 7.65 -40.82 -0.31 10.28 16 23 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 24 H 0.03 0.53 6.18 -51.93 -0.32 0.21 16 25 H 0.07 1.39 7.39 -51.93 -0.38 1.00 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.93 7.83 -51.93 -0.41 0.53 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 1.20 5.43 -51.93 -0.28 0.92 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 250.39 15.07 3.77 3.77 Total: -1.00 -30.45 250.39 -7.86 -38.30 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -5.06 Total: 4.99 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -1.95 Total: -17.11 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.39 Total: -47.86 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.45 -7.86 -38.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082527832.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.069 kcal (2) G-P(sol) polarization free energy of solvation -30.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds