Wall clock time and date at job start Mon Mar 30 2020 02:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00214 * 2 1 4 4 H 1.48497 * 109.46961 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47039 * 300.00023 * 3 2 1 6 6 H 1.48498 * 109.47166 * 59.99804 * 3 2 1 7 7 C 1.38811 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00076 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00505 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00173 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47091 * 179.97438 * 10 9 7 12 12 H 1.09001 * 110.44925 * 308.56979 * 11 10 9 13 13 C 1.54587 * 110.40069 * 70.95701 * 11 10 9 14 14 C 1.55927 * 104.64137 * 118.79407 * 13 11 10 15 15 H 1.09007 * 116.52633 * 160.39346 * 14 13 11 16 16 C 1.55923 * 104.49894 * 289.71755 * 14 13 11 17 17 C 1.54587 * 104.64380 * 70.27766 * 16 14 13 18 18 C 1.55926 * 104.64060 * 0.02562 * 17 16 14 19 19 H 1.09003 * 115.92317 * 160.02930 * 18 17 16 20 20 C 1.56946 * 100.65392 * 33.77660 * 14 13 11 21 21 H 0.97001 * 120.00227 * 0.02562 * 1 2 3 22 22 H 0.97001 * 119.99411 * 359.97438 * 9 7 2 23 23 H 1.08996 * 109.47640 * 59.99717 * 10 9 7 24 24 H 1.09003 * 109.47350 * 299.99550 * 10 9 7 25 25 H 1.08997 * 110.39965 * 0.02562 * 13 11 10 26 26 H 1.09001 * 110.39594 * 237.58468 * 13 11 10 27 27 H 1.09002 * 110.40564 * 311.49363 * 16 14 13 28 28 H 1.08993 * 110.50516 * 189.12037 * 16 14 13 29 29 H 1.09007 * 110.39901 * 118.78824 * 17 16 14 30 30 H 1.08991 * 110.40557 * 241.20951 * 17 16 14 31 31 H 1.09003 * 112.02743 * 63.17602 * 20 14 13 32 32 H 1.08997 * 112.02891 * 189.62157 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 6 1.0637 -4.8197 0.0021 12 1 0.3319 -4.6949 0.8002 13 6 0.3547 -4.9230 -1.3678 14 6 0.7441 -6.3330 -1.9078 15 1 0.1071 -6.7482 -2.6888 16 6 2.2592 -6.2128 -2.2562 17 6 2.9682 -6.1094 -0.8865 18 6 1.8148 -6.1776 0.1605 19 1 2.1061 -6.4576 1.1729 20 6 0.8183 -7.1466 -0.5678 21 1 -0.4850 0.8400 -0.0004 22 1 0.3554 -2.3881 0.0005 23 1 2.6839 -3.7142 0.8921 24 1 2.6852 -3.7150 -0.8878 25 1 0.7148 -4.1456 -2.0415 26 1 -0.7256 -4.8490 -1.2429 27 1 2.4431 -5.3159 -2.8478 28 1 2.5987 -7.0980 -2.7940 29 1 3.6547 -6.9450 -0.7499 30 1 3.5006 -5.1619 -0.8047 31 1 -0.1473 -7.1942 -0.0644 32 1 1.2455 -8.1386 -0.7149 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082527832.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:03 Heat of formation + Delta-G solvation = -14.620309 kcal Electronic energy + Delta-G solvation = -12622.517667 eV Core-core repulsion = 10581.845766 eV Total energy + Delta-G solvation = -2040.671901 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.26866 -36.47461 -33.51786 -31.03411 -30.43801 -28.97895 -26.28178 -24.09571 -22.41571 -20.82687 -19.51333 -18.86482 -17.22693 -16.79261 -16.05463 -15.81547 -14.97034 -14.70847 -14.18016 -13.40374 -13.18029 -12.94604 -12.84671 -12.45585 -12.23245 -12.13771 -12.03866 -11.85612 -11.70556 -11.49761 -11.49347 -11.03124 -10.86921 -10.69754 -8.99693 -7.96939 -5.25770 1.44746 1.46251 1.56489 2.54197 3.35908 3.57124 3.63903 3.67572 4.11162 4.27711 4.38626 4.44095 4.49411 4.56522 4.63203 4.67383 4.79481 4.94405 5.01471 5.09288 5.19217 5.24133 5.29590 5.34275 5.38001 5.43350 5.48547 5.51557 5.67828 6.25960 7.31156 8.08791 8.32484 9.27079 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.067684 B = 0.008382 C = 0.008120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.585850 B = 3339.796251 C = 3447.557250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.976 3.024 4 H -0.266 1.266 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.246 4.246 8 H 0.073 0.927 9 N -0.746 5.746 10 C 0.160 3.840 11 C -0.093 4.093 12 H 0.055 0.945 13 C -0.112 4.112 14 C -0.100 4.100 15 H 0.110 0.890 16 C -0.118 4.118 17 C -0.129 4.129 18 C -0.094 4.094 19 H 0.106 0.894 20 C -0.113 4.113 21 H 0.251 0.749 22 H 0.372 0.628 23 H 0.011 0.989 24 H 0.025 0.975 25 H 0.041 0.959 26 H 0.052 0.948 27 H 0.044 0.956 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.482 -15.207 -2.487 15.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.378 4.378 8 H 0.091 0.909 9 N -0.388 5.388 10 C 0.035 3.965 11 C -0.112 4.112 12 H 0.074 0.926 13 C -0.150 4.150 14 C -0.118 4.118 15 H 0.128 0.872 16 C -0.156 4.156 17 C -0.167 4.167 18 C -0.112 4.112 19 H 0.124 0.876 20 C -0.150 4.150 21 H 0.060 0.940 22 H 0.204 0.796 23 H 0.029 0.971 24 H 0.043 0.957 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.673 -15.101 -2.494 15.740 hybrid contribution -0.144 1.482 0.078 1.491 sum 3.529 -13.620 -2.416 14.275 Atomic orbital electron populations 1.69834 1.06657 1.26024 1.59605 1.25612 0.96477 1.01212 1.03713 0.85037 0.78156 0.79561 0.76801 1.19077 1.21837 1.21812 1.19692 0.91441 0.85536 1.41141 0.90887 1.42647 1.05600 1.01343 1.89250 1.20969 0.93856 0.84713 0.97006 1.22299 0.96902 0.94667 0.97333 0.92616 1.22588 0.99056 0.97389 0.95944 1.23616 0.96395 0.94132 0.97705 0.87157 1.22585 0.94914 1.01219 0.96863 1.22755 0.97491 1.01800 0.94626 1.23577 0.95649 0.93192 0.98805 0.87614 1.23520 0.98806 0.97873 0.94821 0.93971 0.79627 0.97147 0.95704 0.93968 0.92875 0.93698 0.90124 0.90267 0.92623 0.91295 0.89302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.37 13.06 21.65 0.28 -61.08 16 2 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 3 Si 0.98 47.51 29.55 68.60 2.03 49.54 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 7 C -0.25 -14.46 9.99 84.03 0.84 -13.62 16 8 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.75 -40.40 5.50 -343.45 -1.89 -42.29 16 10 C 0.16 6.90 4.51 86.38 0.39 7.29 16 11 C -0.09 -3.23 2.71 -9.22 -0.03 -3.25 16 12 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 13 C -0.11 -3.72 5.73 32.15 0.18 -3.53 16 14 C -0.10 -2.47 5.19 -7.38 -0.04 -2.50 16 15 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 16 C -0.12 -2.89 6.21 32.15 0.20 -2.69 16 17 C -0.13 -3.27 5.86 32.15 0.19 -3.08 16 18 C -0.09 -2.44 4.93 -7.37 -0.04 -2.47 16 19 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 20 C -0.11 -2.45 6.42 33.35 0.21 -2.24 16 21 H 0.25 15.29 8.31 -92.71 -0.77 14.51 16 22 H 0.37 21.39 7.65 -92.71 -0.71 20.68 16 23 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 24 H 0.03 1.09 6.18 -2.39 -0.01 1.07 16 25 H 0.04 1.64 7.39 -2.39 -0.02 1.62 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.04 1.27 7.83 -2.39 -0.02 1.25 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 29 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.06 1.66 5.43 -2.39 -0.01 1.64 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -65.50 250.39 3.18 -62.32 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.38 Total: 21.81 kcal Atomic # 6 Polarization: -32.68 SS G_CDS: 2.38 Total: -30.30 kcal Atomic # 7 Polarization: -101.76 SS G_CDS: -1.61 Total: -103.37 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -65.50 3.18 -62.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082527832.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.695 kcal (2) G-P(sol) polarization free energy of solvation -65.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds