Wall clock time and date at job start Mon Mar 30 2020 02:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00053 * 2 1 4 4 H 1.48501 * 109.46735 * 269.99546 * 3 2 1 5 5 H 1.48505 * 109.47165 * 29.99546 * 3 2 1 6 6 H 1.48500 * 109.47220 * 149.99717 * 3 2 1 7 7 C 1.38810 * 119.99700 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00551 * 0.02562 * 7 2 1 9 9 N 1.36937 * 119.99689 * 180.02562 * 7 2 1 10 10 C 1.46503 * 120.00090 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47269 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47127 * 184.99793 * 11 10 9 13 13 C 1.52998 * 117.49473 * 128.74735 * 12 11 10 14 14 C 1.52999 * 117.49564 * 60.08975 * 12 11 10 15 15 C 1.52999 * 109.46991 * 65.00478 * 11 10 9 16 16 C 1.53005 * 117.49421 * 248.74300 * 15 11 10 17 17 C 1.53005 * 117.50089 * 180.09060 * 15 11 10 18 18 H 0.97003 * 119.99804 * 0.02562 * 1 2 3 19 19 H 0.97002 * 120.00403 * 0.02562 * 9 7 2 20 20 H 1.09002 * 109.46913 * 59.99757 * 10 9 7 21 21 H 1.09001 * 109.46815 * 300.00334 * 10 9 7 22 22 H 1.08993 * 109.47194 * 304.99635 * 11 10 9 23 23 H 1.08996 * 115.55247 * 274.41876 * 12 11 10 24 24 H 1.08992 * 117.50074 * 0.02562 * 13 12 11 25 25 H 1.09001 * 117.49625 * 145.02619 * 13 12 11 26 26 H 1.09006 * 117.49693 * 214.97957 * 14 12 11 27 27 H 1.08998 * 117.50050 * 359.97172 * 14 12 11 28 28 H 1.08995 * 115.55503 * 34.40793 * 15 11 10 29 29 H 1.08999 * 117.50011 * 0.02562 * 16 15 11 30 30 H 1.09004 * 117.49761 * 145.01847 * 16 15 11 31 31 H 1.09000 * 117.50058 * 214.98050 * 17 15 11 32 32 H 1.08999 * 117.49282 * 359.96831 * 17 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 6 5.6163 -2.1913 0.0011 12 6 6.3803 -3.5110 -0.1246 13 6 7.4520 -3.6059 -1.2124 14 6 6.1281 -4.3570 -1.3742 15 6 6.0063 -1.4989 1.3085 16 6 6.4457 -0.0355 1.2289 17 6 7.4790 -1.1314 1.5013 18 1 -0.4850 0.8401 -0.0004 19 1 3.8646 -0.3621 0.0014 20 1 3.8491 -3.0423 -0.8891 21 1 3.8484 -3.0427 0.8908 22 1 5.8658 -1.5455 -0.8407 23 1 6.5651 -4.0383 0.8113 24 1 7.6131 -2.7282 -1.8382 25 1 8.3416 -4.1961 -0.9923 26 1 6.1472 -5.4410 -1.2604 27 1 5.4175 -3.9737 -2.1065 28 1 5.4453 -1.8087 2.1901 29 1 6.4565 0.4341 0.2453 30 1 6.1740 0.6174 2.0585 31 1 7.8868 -1.1992 2.5099 32 1 8.1700 -1.3834 0.6969 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083895039.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:04 Heat of formation + Delta-G solvation = 52.225234 kcal Electronic energy + Delta-G solvation = -12388.785173 eV Core-core repulsion = 10351.011912 eV Total energy + Delta-G solvation = -2037.773261 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.72824 -35.95684 -34.47336 -31.51079 -28.97242 -24.31319 -22.40177 -22.18607 -21.37390 -21.04145 -19.49951 -17.49433 -15.74108 -15.14883 -14.61226 -14.03399 -13.85346 -13.58693 -12.62462 -12.52227 -11.73236 -11.53928 -11.36899 -11.32589 -11.08144 -10.86542 -10.76536 -10.15027 -10.12245 -10.02309 -9.59282 -9.52310 -9.40715 -8.82453 -7.14278 -5.71227 -3.05168 3.41423 3.45257 3.48767 3.95994 4.07566 4.64759 4.73696 4.96165 5.06924 5.17033 5.26725 5.33796 5.54839 5.60516 5.69930 5.75132 5.81776 5.85536 6.00586 6.12467 6.19498 6.21677 6.25083 6.34478 6.35755 6.57047 6.81351 6.91098 8.06941 8.48570 9.29189 10.01801 10.23127 11.47542 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.038035 B = 0.010904 C = 0.009121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.981168 B = 2567.140333 C = 3068.992700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.002 3.998 3 Si 0.880 3.120 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.273 1.273 7 C -0.239 4.239 8 H 0.089 0.911 9 N -0.755 5.755 10 C 0.166 3.834 11 C -0.039 4.039 12 C -0.132 4.132 13 C -0.185 4.185 14 C -0.180 4.180 15 C -0.129 4.129 16 C -0.180 4.180 17 C -0.184 4.184 18 H 0.258 0.742 19 H 0.362 0.638 20 H 0.028 0.972 21 H 0.026 0.974 22 H 0.068 0.932 23 H 0.103 0.897 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.865 -4.636 0.417 16.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.194 4.194 3 Si 0.711 3.289 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.199 1.199 7 C -0.369 4.369 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.039 3.961 11 C -0.058 4.058 12 C -0.151 4.151 13 C -0.222 4.222 14 C -0.217 4.217 15 C -0.147 4.147 16 C -0.217 4.217 17 C -0.221 4.221 18 H 0.068 0.932 19 H 0.195 0.805 20 H 0.046 0.954 21 H 0.044 0.956 22 H 0.087 0.913 23 H 0.121 0.879 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.115 0.885 28 H 0.123 0.877 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.626 -4.721 0.420 16.329 hybrid contribution 0.496 1.273 0.035 1.366 sum 16.122 -3.448 0.455 16.493 Atomic orbital electron populations 1.69707 1.05092 1.25686 1.58062 1.24659 0.95225 0.97147 1.02326 0.86584 0.79523 0.85043 0.77786 1.21218 1.21834 1.19857 1.19088 0.80808 0.94669 1.42382 0.89308 1.42717 1.03889 1.02408 1.91040 1.20625 0.87677 0.89128 0.98639 1.20598 0.95990 0.93595 0.95574 1.22166 1.01288 0.98057 0.93576 1.22993 0.92920 1.02961 1.03299 1.22963 0.99360 0.98191 1.01196 1.22222 0.96021 0.97005 0.99424 1.22969 1.03906 0.92048 1.02796 1.22913 0.92624 1.04542 1.02007 0.93178 0.80519 0.95371 0.95570 0.91337 0.87907 0.89190 0.89346 0.89116 0.88467 0.87738 0.89207 0.89161 0.89472 0.89089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.09 13.97 55.49 0.78 -29.32 16 2 C 0.00 0.05 5.50 -17.43 -0.10 -0.04 16 3 Si 0.88 22.60 27.74 -169.99 -4.71 17.88 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.27 -6.55 6.52 56.52 0.37 -6.18 16 7 C -0.24 -6.98 10.47 -15.06 -0.16 -7.14 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 9 N -0.76 -18.52 5.20 -59.91 -0.31 -18.83 16 10 C 0.17 3.34 5.55 -4.04 -0.02 3.32 16 11 C -0.04 -0.62 2.20 -90.62 -0.20 -0.82 16 12 C -0.13 -1.75 4.81 -90.62 -0.44 -2.18 16 13 C -0.18 -2.13 10.18 -26.69 -0.27 -2.40 16 14 C -0.18 -2.24 9.68 -26.69 -0.26 -2.50 16 15 C -0.13 -1.99 4.67 -90.61 -0.42 -2.41 16 16 C -0.18 -2.72 10.08 -26.69 -0.27 -2.99 16 17 C -0.18 -2.36 9.88 -26.69 -0.26 -2.62 16 18 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 19 H 0.36 8.67 5.19 -40.82 -0.21 8.46 16 20 H 0.03 0.58 7.13 -51.93 -0.37 0.21 16 21 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.07 1.14 7.66 -51.93 -0.40 0.74 16 23 H 0.10 1.30 8.11 -51.93 -0.42 0.88 16 24 H 0.09 1.04 8.05 -51.93 -0.42 0.62 16 25 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.10 1.31 7.59 -51.93 -0.39 0.91 16 28 H 0.10 1.71 8.11 -51.93 -0.42 1.29 16 29 H 0.09 1.37 8.05 -51.93 -0.42 0.95 16 30 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 265.77 15.07 4.01 4.01 Total: -1.00 -31.18 265.77 -7.82 -39.00 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -5.18 Total: 7.05 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -2.40 Total: -19.79 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: 0.46 Total: -48.15 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.71 Total: 17.88 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.18 -7.82 -39.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083895039.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.227 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds