Wall clock time and date at job start Mon Mar 30 2020 02:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00053 * 2 1 4 4 H 1.48501 * 109.46735 * 269.99546 * 3 2 1 5 5 H 1.48505 * 109.47165 * 29.99546 * 3 2 1 6 6 H 1.48500 * 109.47220 * 149.99717 * 3 2 1 7 7 C 1.38810 * 119.99700 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00551 * 0.02562 * 7 2 1 9 9 N 1.36937 * 119.99689 * 180.02562 * 7 2 1 10 10 C 1.46503 * 120.00090 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47269 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47127 * 184.99793 * 11 10 9 13 13 C 1.52998 * 117.49473 * 128.74735 * 12 11 10 14 14 C 1.52999 * 117.49564 * 60.08975 * 12 11 10 15 15 C 1.52999 * 109.46991 * 65.00478 * 11 10 9 16 16 C 1.53005 * 117.49421 * 248.74300 * 15 11 10 17 17 C 1.53005 * 117.50089 * 180.09060 * 15 11 10 18 18 H 0.97003 * 119.99804 * 0.02562 * 1 2 3 19 19 H 0.97002 * 120.00403 * 0.02562 * 9 7 2 20 20 H 1.09002 * 109.46913 * 59.99757 * 10 9 7 21 21 H 1.09001 * 109.46815 * 300.00334 * 10 9 7 22 22 H 1.08993 * 109.47194 * 304.99635 * 11 10 9 23 23 H 1.08996 * 115.55247 * 274.41876 * 12 11 10 24 24 H 1.08992 * 117.50074 * 0.02562 * 13 12 11 25 25 H 1.09001 * 117.49625 * 145.02619 * 13 12 11 26 26 H 1.09006 * 117.49693 * 214.97957 * 14 12 11 27 27 H 1.08998 * 117.50050 * 359.97172 * 14 12 11 28 28 H 1.08995 * 115.55503 * 34.40793 * 15 11 10 29 29 H 1.08999 * 117.50011 * 0.02562 * 16 15 11 30 30 H 1.09004 * 117.49761 * 145.01847 * 16 15 11 31 31 H 1.09000 * 117.50058 * 214.98050 * 17 15 11 32 32 H 1.08999 * 117.49282 * 359.96831 * 17 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 6 5.6163 -2.1913 0.0011 12 6 6.3803 -3.5110 -0.1246 13 6 7.4520 -3.6059 -1.2124 14 6 6.1281 -4.3570 -1.3742 15 6 6.0063 -1.4989 1.3085 16 6 6.4457 -0.0355 1.2289 17 6 7.4790 -1.1314 1.5013 18 1 -0.4850 0.8401 -0.0004 19 1 3.8646 -0.3621 0.0014 20 1 3.8491 -3.0423 -0.8891 21 1 3.8484 -3.0427 0.8908 22 1 5.8658 -1.5455 -0.8407 23 1 6.5651 -4.0383 0.8113 24 1 7.6131 -2.7282 -1.8382 25 1 8.3416 -4.1961 -0.9923 26 1 6.1472 -5.4410 -1.2604 27 1 5.4175 -3.9737 -2.1065 28 1 5.4453 -1.8087 2.1901 29 1 6.4565 0.4341 0.2453 30 1 6.1740 0.6174 2.0585 31 1 7.8868 -1.1992 2.5099 32 1 8.1700 -1.3834 0.6969 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083895039.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:04 Heat of formation + Delta-G solvation = 33.661990 kcal Electronic energy + Delta-G solvation = -12389.590136 eV Core-core repulsion = 10351.011912 eV Total energy + Delta-G solvation = -2038.578224 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.91647 -37.00081 -36.38992 -33.60241 -30.62579 -26.11472 -23.78718 -23.27143 -22.79235 -22.18824 -20.80259 -19.57860 -16.91964 -16.54227 -16.38200 -15.43704 -15.38045 -15.00627 -14.63396 -13.99818 -13.51984 -12.99790 -12.87328 -12.45820 -12.34219 -12.26064 -12.13869 -12.06754 -11.83820 -11.21383 -11.14209 -10.95379 -10.65156 -10.61987 -9.28583 -8.03992 -5.36387 1.35723 1.38856 1.47190 2.47368 2.94155 2.97232 3.27013 3.57541 3.70680 3.99902 4.07993 4.16680 4.24357 4.26403 4.46023 4.53180 4.80118 4.81763 4.83362 4.87773 5.00423 5.10654 5.14069 5.20251 5.29477 5.34288 5.39196 5.55587 5.74641 6.20688 7.07742 7.84998 8.06018 9.17850 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.038035 B = 0.010904 C = 0.009121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.981168 B = 2567.140333 C = 3068.992700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.065 4.065 3 Si 0.951 3.049 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.247 1.247 7 C -0.234 4.234 8 H 0.054 0.946 9 N -0.755 5.755 10 C 0.163 3.837 11 C -0.025 4.025 12 C -0.143 4.143 13 C -0.163 4.163 14 C -0.189 4.189 15 C -0.150 4.150 16 C -0.197 4.197 17 C -0.149 4.149 18 H 0.258 0.742 19 H 0.367 0.633 20 H 0.023 0.977 21 H 0.019 0.981 22 H 0.064 0.936 23 H 0.112 0.888 24 H 0.091 0.909 25 H 0.112 0.888 26 H 0.105 0.895 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.933 -4.318 0.485 19.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.257 4.257 3 Si 0.778 3.222 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.171 1.171 7 C -0.365 4.365 8 H 0.072 0.928 9 N -0.401 5.401 10 C 0.037 3.963 11 C -0.044 4.044 12 C -0.161 4.161 13 C -0.200 4.200 14 C -0.226 4.226 15 C -0.168 4.168 16 C -0.234 4.234 17 C -0.186 4.186 18 H 0.067 0.933 19 H 0.201 0.799 20 H 0.041 0.959 21 H 0.037 0.963 22 H 0.083 0.917 23 H 0.130 0.870 24 H 0.109 0.891 25 H 0.130 0.870 26 H 0.124 0.876 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.123 0.877 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 18.743 -4.433 0.488 19.266 hybrid contribution -0.503 1.057 0.007 1.170 sum 18.240 -3.376 0.495 18.556 Atomic orbital electron populations 1.69891 1.07125 1.26668 1.59906 1.25513 0.96154 1.01275 1.02724 0.85451 0.78994 0.79529 0.78223 1.20423 1.22092 1.17128 1.19072 0.82909 0.93434 1.41118 0.92801 1.42709 1.02315 1.04308 1.90783 1.20790 0.90549 0.87162 0.97804 1.20402 0.92866 0.95253 0.95889 1.22091 1.02594 0.96900 0.94560 1.23068 0.92946 1.02737 1.01221 1.23012 1.00126 0.99104 1.00326 1.22149 0.98587 0.97548 0.98496 1.23056 1.05662 0.91982 1.02738 1.22970 0.90991 1.01102 1.03508 0.93343 0.79924 0.95915 0.96324 0.91747 0.86993 0.89074 0.86974 0.87620 0.90102 0.89163 0.89416 0.89366 0.87713 0.87595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.88 13.97 21.65 0.30 -64.57 16 2 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 3 Si 0.95 46.68 27.74 68.60 1.90 48.58 16 4 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.29 -14.51 7.11 99.48 0.71 -13.81 16 6 H -0.25 -10.94 6.52 99.48 0.65 -10.29 16 7 C -0.23 -13.96 10.47 84.03 0.88 -13.08 16 8 H 0.05 3.51 8.06 -2.91 -0.02 3.49 16 9 N -0.76 -37.00 5.20 -343.45 -1.79 -38.79 16 10 C 0.16 6.54 5.55 86.38 0.48 7.02 16 11 C -0.03 -0.77 2.20 -10.79 -0.02 -0.79 16 12 C -0.14 -3.43 4.81 -10.79 -0.05 -3.48 16 13 C -0.16 -3.17 10.18 30.62 0.31 -2.86 16 14 C -0.19 -4.32 9.68 30.62 0.30 -4.02 16 15 C -0.15 -4.33 4.67 -10.79 -0.05 -4.38 16 16 C -0.20 -5.45 10.08 30.62 0.31 -5.15 16 17 C -0.15 -3.28 9.88 30.62 0.30 -2.97 16 18 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 19 H 0.37 17.12 5.19 -92.71 -0.48 16.64 16 20 H 0.02 0.94 7.13 -2.39 -0.02 0.92 16 21 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 22 H 0.06 2.01 7.66 -2.39 -0.02 1.99 16 23 H 0.11 2.51 8.11 -2.39 -0.02 2.49 16 24 H 0.09 1.79 8.05 -2.39 -0.02 1.77 16 25 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 27 H 0.08 2.11 7.59 -2.39 -0.02 2.09 16 28 H 0.09 2.86 8.11 -2.39 -0.02 2.84 16 29 H 0.09 2.45 8.05 -2.39 -0.02 2.43 16 30 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 31 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -67.63 265.77 3.88 -63.75 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.54 Total: 24.26 kcal Atomic # 6 Polarization: -36.15 SS G_CDS: 2.92 Total: -33.23 kcal Atomic # 7 Polarization: -101.88 SS G_CDS: -1.48 Total: -103.36 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 1.90 Total: 48.58 kcal Total: -67.63 3.88 -63.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083895039.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.415 kcal (2) G-P(sol) polarization free energy of solvation -67.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds