Wall clock time and date at job start Mon Mar 30 2020 01:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00489 * 2 1 3 5 5 N 1.46499 * 109.46679 * 294.99474 * 4 2 1 6 6 N 1.40451 * 127.01936 * 269.68034 * 5 4 2 7 7 C 1.31396 * 107.17859 * 179.89172 * 6 5 4 8 8 N 1.32228 * 109.68779 * 0.38782 * 7 6 5 9 9 C 1.33071 * 109.79786 * 359.75002 * 8 7 6 10 10 C 1.40363 * 126.31278 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99660 * 179.97438 * 10 9 8 12 12 C 1.40261 * 120.00608 * 359.97403 * 10 9 8 13 13 N 1.30647 * 119.99779 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00257 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47014 * 60.00222 * 14 12 10 16 16 H 1.48503 * 109.47307 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47246 * 300.00091 * 14 12 10 18 18 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 19 19 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 21 21 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 22 22 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 23 23 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 25 25 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 26 26 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 27 27 H 1.08003 * 125.15682 * 180.11421 * 7 6 5 28 28 H 0.97001 * 119.99554 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 1.6525 -2.1328 -1.1906 6 7 2.3899 -3.1896 -0.6320 7 6 1.6797 -4.2839 -0.7890 8 7 0.5505 -3.9962 -1.4141 9 6 0.4993 -2.6924 -1.6751 10 6 -0.5437 -2.0153 -2.3261 11 1 -0.4790 -0.9490 -2.4850 12 6 -1.6701 -2.7234 -2.7702 13 7 -1.7487 -4.0132 -2.5774 14 14 -3.0579 -1.8224 -3.6371 15 1 -2.5349 -1.1731 -4.8660 16 1 -4.1237 -2.7896 -4.0030 17 1 -3.6186 -0.7880 -2.7311 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5139 -0.8900 21 1 1.8934 -0.5138 0.8899 22 1 1.6767 1.9563 0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6054 -0.2616 -2.1371 26 1 3.1263 -0.6443 -1.2952 27 1 1.9755 -5.2696 -0.4616 28 1 -2.5275 -4.5029 -2.8849 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083978454.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:25 Heat of formation + Delta-G solvation = 63.247018 kcal Electronic energy + Delta-G solvation = -12477.293068 eV Core-core repulsion = 10336.457404 eV Total energy + Delta-G solvation = -2140.835664 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.67119 -35.83084 -33.55725 -30.94648 -29.43780 -26.74377 -26.19830 -24.91350 -20.55377 -20.13923 -19.12709 -16.77990 -15.78443 -14.63610 -14.32161 -14.11795 -13.49286 -12.75519 -12.65624 -12.09833 -11.89942 -11.65801 -11.58074 -11.26203 -10.83475 -10.62046 -10.46697 -10.42057 -10.07241 -9.66534 -9.38806 -7.93891 -7.73367 -7.69059 -6.55827 -4.62345 2.97960 3.09160 3.10268 3.53155 3.89452 4.17290 4.65562 5.28616 5.33880 5.53336 5.61379 5.80719 5.98522 6.06449 6.14621 6.24271 6.30491 6.39083 6.51881 6.79563 6.92320 7.05707 7.22099 7.61572 8.02058 8.37491 8.50239 8.79474 9.16254 10.27634 10.41058 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.031188 B = 0.015551 C = 0.011078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.574139 B = 1800.060680 C = 2527.014916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.141 4.141 4 C 0.163 3.837 5 N -0.453 5.453 6 N -0.421 5.421 7 C 0.183 3.817 8 N -0.567 5.567 9 C 0.409 3.591 10 C -0.447 4.447 11 H 0.085 0.915 12 C 0.082 3.918 13 N -0.729 5.729 14 Si 0.911 3.089 15 H -0.265 1.265 16 H -0.277 1.277 17 H -0.264 1.264 18 H 0.039 0.961 19 H 0.074 0.926 20 H 0.054 0.946 21 H 0.068 0.932 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.177 0.823 28 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.670 7.438 0.931 7.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.131 4.131 3 C -0.199 4.199 4 C 0.038 3.962 5 N -0.247 5.247 6 N -0.254 5.254 7 C -0.121 4.121 8 N -0.301 5.301 9 C 0.161 3.839 10 C -0.489 4.489 11 H 0.103 0.897 12 C -0.144 4.144 13 N -0.353 5.353 14 Si 0.735 3.265 15 H -0.190 1.190 16 H -0.202 1.202 17 H -0.189 1.189 18 H 0.058 0.942 19 H 0.092 0.908 20 H 0.073 0.927 21 H 0.086 0.914 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.193 0.807 28 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.060 7.048 1.181 7.225 hybrid contribution -0.688 0.518 -0.420 0.958 sum 0.373 7.567 0.762 7.614 Atomic orbital electron populations 1.21909 0.94283 1.03611 1.00336 1.21543 0.97176 0.95286 0.99144 1.21776 1.00484 0.96119 1.01561 1.21097 0.99159 0.78578 0.97401 1.50251 1.16913 1.05487 1.52031 1.77691 1.22048 0.95622 1.30055 1.25380 0.91690 0.97143 0.97864 1.71437 1.20384 1.12018 1.26308 1.20969 0.85426 0.87513 0.90008 1.18351 0.99975 0.95225 1.35302 0.89655 1.25825 0.98974 0.94732 0.94900 1.69988 1.26748 1.07241 1.31282 0.86330 0.80037 0.79901 0.80203 1.18984 1.20182 1.18909 0.94159 0.90754 0.92672 0.91396 0.92870 0.93028 0.92673 0.90534 0.91526 0.80663 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 7.98 37.16 0.30 -2.36 15 2 C -0.11 -1.96 3.13 -90.62 -0.28 -2.24 15 3 C -0.14 -1.90 9.19 37.16 0.34 -1.56 15 4 C 0.16 3.24 5.72 -4.04 -0.02 3.22 15 5 N -0.45 -11.36 3.52 -60.45 -0.21 -11.58 15 6 N -0.42 -10.97 12.71 29.22 0.37 -10.59 15 7 C 0.18 4.78 12.97 -92.12 -1.20 3.58 15 8 N -0.57 -16.40 9.40 -13.96 -0.13 -16.53 15 9 C 0.41 11.27 6.37 -155.87 -0.99 10.27 15 10 C -0.45 -11.60 7.51 -38.02 -0.29 -11.89 15 11 H 0.09 2.03 6.19 -52.49 -0.33 1.70 15 12 C 0.08 2.07 5.50 -17.30 -0.10 1.98 15 13 N -0.73 -19.64 11.93 55.56 0.66 -18.97 15 14 Si 0.91 18.32 29.56 -169.99 -5.03 13.29 15 15 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 16 H -0.28 -5.46 7.11 56.52 0.40 -5.06 15 17 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 18 H 0.04 0.65 8.14 -51.93 -0.42 0.23 15 19 H 0.07 1.67 5.93 -51.93 -0.31 1.36 15 20 H 0.05 0.97 7.46 -51.93 -0.39 0.58 15 21 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 15 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 15 24 H 0.05 0.69 8.14 -51.93 -0.42 0.26 15 25 H 0.08 1.45 7.46 -51.93 -0.39 1.07 15 26 H 0.07 1.24 8.14 -51.93 -0.42 0.82 15 27 H 0.18 3.86 8.06 -52.48 -0.42 3.44 15 28 H 0.28 6.75 8.29 -40.82 -0.34 6.41 15 LS Contribution 239.05 15.07 3.60 3.60 Total: -1.00 -30.79 239.05 -6.47 -37.26 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -3.50 Total: 2.51 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -2.24 Total: 1.00 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: 0.69 Total: -57.67 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -30.79 -6.47 -37.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083978454.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.506 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds