Wall clock time and date at job start Mon Mar 30 2020 01:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00489 * 2 1 3 5 5 N 1.46499 * 109.46679 * 294.99474 * 4 2 1 6 6 N 1.40451 * 127.01936 * 269.68034 * 5 4 2 7 7 C 1.31396 * 107.17859 * 179.89172 * 6 5 4 8 8 N 1.32228 * 109.68779 * 0.38782 * 7 6 5 9 9 C 1.33071 * 109.79786 * 359.75002 * 8 7 6 10 10 C 1.40363 * 126.31278 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99660 * 179.97438 * 10 9 8 12 12 C 1.40261 * 120.00608 * 359.97403 * 10 9 8 13 13 N 1.30647 * 119.99779 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00257 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47014 * 60.00222 * 14 12 10 16 16 H 1.48503 * 109.47307 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47246 * 300.00091 * 14 12 10 18 18 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 19 19 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 21 21 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 22 22 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 23 23 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 25 25 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 26 26 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 27 27 H 1.08003 * 125.15682 * 180.11421 * 7 6 5 28 28 H 0.97001 * 119.99554 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 1.6525 -2.1328 -1.1906 6 7 2.3899 -3.1896 -0.6320 7 6 1.6797 -4.2839 -0.7890 8 7 0.5505 -3.9962 -1.4141 9 6 0.4993 -2.6924 -1.6751 10 6 -0.5437 -2.0153 -2.3261 11 1 -0.4790 -0.9490 -2.4850 12 6 -1.6701 -2.7234 -2.7702 13 7 -1.7487 -4.0132 -2.5774 14 14 -3.0579 -1.8224 -3.6371 15 1 -2.5349 -1.1731 -4.8660 16 1 -4.1237 -2.7896 -4.0030 17 1 -3.6186 -0.7880 -2.7311 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5139 -0.8900 21 1 1.8934 -0.5138 0.8899 22 1 1.6767 1.9563 0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6054 -0.2616 -2.1371 26 1 3.1263 -0.6443 -1.2952 27 1 1.9755 -5.2696 -0.4616 28 1 -2.5275 -4.5029 -2.8849 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083978454.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:25 Heat of formation + Delta-G solvation = 44.825747 kcal Electronic energy + Delta-G solvation = -12478.091875 eV Core-core repulsion = 10336.457404 eV Total energy + Delta-G solvation = -2141.634470 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.64007 -37.33552 -35.48609 -32.71585 -31.44585 -28.38545 -27.74857 -26.68394 -22.32028 -22.08647 -20.75949 -18.69401 -17.66342 -16.31475 -16.01052 -15.64233 -15.20309 -14.60876 -14.30485 -13.62976 -13.51054 -13.21536 -12.93512 -12.87239 -12.50446 -12.15041 -12.09639 -11.88689 -11.66311 -11.47020 -11.21608 -9.85721 -9.77822 -9.75625 -8.45213 -6.62689 1.27672 1.45467 1.58867 1.70674 2.19161 2.40777 2.68988 3.52261 3.84101 4.01003 4.17782 4.24356 4.48337 4.54746 4.82054 4.83997 4.94996 5.04604 5.11020 5.22119 5.29491 5.42700 5.53974 5.72629 6.08604 6.40966 6.51544 6.84118 7.20883 8.29550 8.50993 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.031188 B = 0.015551 C = 0.011078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.574139 B = 1800.060680 C = 2527.014916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 C -0.132 4.132 4 C 0.152 3.848 5 N -0.456 5.456 6 N -0.432 5.432 7 C 0.170 3.830 8 N -0.609 5.609 9 C 0.384 3.616 10 C -0.461 4.461 11 H 0.102 0.898 12 C 0.034 3.966 13 N -0.774 5.774 14 Si 0.993 3.007 15 H -0.255 1.255 16 H -0.272 1.272 17 H -0.253 1.253 18 H 0.061 0.939 19 H 0.027 0.973 20 H 0.064 0.936 21 H 0.046 0.954 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.205 0.795 28 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.155 9.635 0.462 9.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.124 4.124 3 C -0.189 4.189 4 C 0.029 3.971 5 N -0.250 5.250 6 N -0.265 5.265 7 C -0.134 4.134 8 N -0.344 5.344 9 C 0.136 3.864 10 C -0.502 4.502 11 H 0.120 0.880 12 C -0.188 4.188 13 N -0.398 5.398 14 Si 0.812 3.188 15 H -0.178 1.178 16 H -0.197 1.197 17 H -0.177 1.177 18 H 0.080 0.920 19 H 0.046 0.954 20 H 0.083 0.917 21 H 0.065 0.935 22 H 0.088 0.912 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.105 0.895 26 H 0.097 0.903 27 H 0.222 0.778 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.582 9.273 0.727 9.319 hybrid contribution -0.471 -0.176 -0.237 0.556 sum 0.110 9.097 0.490 9.111 Atomic orbital electron populations 1.21820 0.94904 1.00934 1.01857 1.21465 0.96527 0.97594 0.96788 1.21705 1.01254 0.92877 1.03097 1.21513 1.00135 0.76332 0.99161 1.50480 1.16246 1.06906 1.51382 1.77570 1.22663 0.96037 1.30278 1.25958 0.91194 0.98489 0.97709 1.71363 1.21883 1.13503 1.27690 1.21345 0.86621 0.87731 0.90715 1.18799 1.00132 0.96104 1.35149 0.87996 1.26926 1.01458 0.95395 0.95053 1.70112 1.28010 1.09285 1.32416 0.85102 0.76075 0.78555 0.79056 1.17849 1.19685 1.17740 0.92003 0.95401 0.91736 0.93536 0.91242 0.91809 0.91228 0.89531 0.90328 0.77830 0.90729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.89 7.98 71.98 0.57 -4.32 15 2 C -0.10 -3.49 3.13 -10.79 -0.03 -3.52 15 3 C -0.13 -3.08 9.19 71.98 0.66 -2.42 15 4 C 0.15 5.88 5.72 86.38 0.49 6.38 15 5 N -0.46 -23.01 3.52 -345.16 -1.22 -24.22 15 6 N -0.43 -22.74 12.71 -61.46 -0.78 -23.53 15 7 C 0.17 9.04 12.97 180.87 2.35 11.39 15 8 N -0.61 -36.07 9.40 -198.07 -1.86 -37.93 15 9 C 0.38 21.47 6.37 133.82 0.85 22.32 15 10 C -0.46 -23.89 7.51 23.28 0.17 -23.72 15 11 H 0.10 4.73 6.19 -2.91 -0.02 4.72 15 12 C 0.03 1.72 5.50 85.36 0.47 2.19 15 13 N -0.77 -42.27 11.93 21.88 0.26 -42.01 15 14 Si 0.99 36.65 29.56 68.60 2.03 38.67 15 15 H -0.25 -8.91 7.11 99.48 0.71 -8.20 15 16 H -0.27 -9.75 7.11 99.48 0.71 -9.04 15 17 H -0.25 -8.85 7.11 99.48 0.71 -8.14 15 18 H 0.06 1.88 8.14 -2.39 -0.02 1.86 15 19 H 0.03 1.23 5.93 -2.39 -0.01 1.22 15 20 H 0.06 2.12 7.46 -2.38 -0.02 2.11 15 21 H 0.05 1.75 8.14 -2.39 -0.02 1.73 15 22 H 0.07 1.43 8.14 -2.39 -0.02 1.41 15 23 H 0.06 1.36 8.14 -2.39 -0.02 1.34 15 24 H 0.07 1.46 8.14 -2.39 -0.02 1.44 15 25 H 0.09 3.15 7.46 -2.39 -0.02 3.13 15 26 H 0.08 2.82 8.14 -2.39 -0.02 2.80 15 27 H 0.21 9.08 8.06 -2.91 -0.02 9.05 15 28 H 0.28 13.96 8.29 -92.71 -0.77 13.19 15 Total: -1.00 -67.22 239.05 5.12 -62.11 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 1.14 Total: 18.61 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 5.54 Total: 8.30 kcal Atomic # 7 Polarization: -124.09 SS G_CDS: -3.60 Total: -127.69 kcal Atomic # 14 Polarization: 36.65 SS G_CDS: 2.03 Total: 38.67 kcal Total: -67.22 5.12 -62.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083978454.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.931 kcal (2) G-P(sol) polarization free energy of solvation -67.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds