Wall clock time and date at job start Mon Mar 30 2020 01:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 109.47329 * 2 1 4 4 N 1.33369 * 125.45396 * 89.99977 * 3 2 1 5 5 C 1.30817 * 109.87475 * 180.02562 * 4 3 2 6 6 C 1.50699 * 126.02077 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47053 * 270.00089 * 6 5 4 8 8 N 1.35307 * 107.95924 * 359.97438 * 5 4 3 9 9 C 1.37432 * 126.87361 * 179.97438 * 8 5 4 10 10 H 1.08002 * 120.00214 * 0.02562 * 9 8 5 11 11 C 1.39001 * 120.00091 * 179.72479 * 9 8 5 12 12 N 1.31274 * 119.99934 * 0.27690 * 11 9 8 13 13 Si 1.86798 * 120.00317 * 180.27837 * 11 9 8 14 14 H 1.48504 * 109.47252 * 59.99994 * 13 11 9 15 15 H 1.48498 * 109.47594 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46858 * 300.00059 * 13 11 9 17 17 N 1.30834 * 125.45855 * 270.28782 * 3 2 1 18 18 H 1.09004 * 109.47232 * 180.02562 * 1 2 3 19 19 H 1.09010 * 109.46997 * 299.99635 * 1 2 3 20 20 H 1.08997 * 109.47125 * 60.00116 * 1 2 3 21 21 H 1.09004 * 109.47026 * 239.99912 * 2 1 3 22 22 H 1.09001 * 109.47412 * 120.00575 * 2 1 3 23 23 H 1.09003 * 109.47273 * 29.99753 * 6 5 4 24 24 H 1.08996 * 109.47170 * 149.99995 * 6 5 4 25 25 H 1.08998 * 109.46950 * 180.02562 * 7 6 5 26 26 H 1.09001 * 109.47020 * 299.99447 * 7 6 5 27 27 H 1.08996 * 109.47210 * 59.99930 * 7 6 5 28 28 H 0.97005 * 119.99949 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2902 2.1501 1.0864 5 6 2.7098 3.3383 0.7351 6 6 3.1038 4.4516 1.6711 7 6 1.8771 5.3090 1.9889 8 7 2.7287 3.3912 -0.6168 9 6 3.1055 4.4594 -1.3951 10 1 3.4299 5.3786 -0.9301 11 6 3.0750 4.3547 -2.7809 12 7 2.6811 3.2373 -3.3462 13 14 3.5945 5.8040 -3.8388 14 1 5.0050 6.1570 -3.5367 15 1 3.4713 5.4394 -5.2730 16 1 2.7196 6.9681 -3.5476 17 7 2.2803 2.1381 -1.0657 18 1 -0.3634 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8901 20 1 -0.3633 0.5138 -0.8900 21 1 1.8933 -0.5139 -0.8900 22 1 1.8934 -0.5139 0.8899 23 1 3.4996 4.0275 2.5940 24 1 3.8670 5.0703 1.1990 25 1 2.1622 6.1145 2.6656 26 1 1.4813 5.7332 1.0661 27 1 1.1139 4.6903 2.4610 28 1 2.6595 3.1644 -4.3132 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084065794.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:29 Heat of formation + Delta-G solvation = 62.667439 kcal Electronic energy + Delta-G solvation = -12297.893334 eV Core-core repulsion = 10157.032537 eV Total energy + Delta-G solvation = -2140.860797 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.25777 -34.32552 -33.30153 -32.13869 -30.43058 -28.32567 -25.39437 -23.36439 -22.80532 -19.54567 -18.80655 -17.43417 -15.41943 -14.47862 -14.19804 -13.76948 -13.57555 -13.16015 -12.94154 -11.92486 -11.83767 -11.61045 -11.33203 -11.21031 -11.03994 -10.73199 -10.64039 -10.47996 -10.25270 -9.76452 -9.65126 -8.28523 -8.13205 -7.69528 -6.62100 -4.38783 2.94050 3.02580 3.05969 3.52127 3.80015 4.39605 4.62539 4.96986 5.37081 5.71659 5.83173 5.86479 6.02585 6.13159 6.20962 6.35761 6.40030 6.46663 6.64492 6.65712 6.79753 6.88399 6.95718 7.16275 7.80055 8.11622 8.40056 8.73819 9.32092 10.03108 10.35058 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.030807 B = 0.014293 C = 0.010420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.653431 B = 1958.504704 C = 2686.595341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.007 4.007 3 C 0.120 3.880 4 N -0.563 5.563 5 C 0.120 3.880 6 C -0.016 4.016 7 C -0.141 4.141 8 N -0.154 5.154 9 C -0.325 4.325 10 H 0.119 0.881 11 C 0.049 3.951 12 N -0.769 5.769 13 Si 0.933 3.067 14 H -0.266 1.266 15 H -0.276 1.276 16 H -0.266 1.266 17 N -0.286 5.286 18 H 0.049 0.951 19 H 0.051 0.949 20 H 0.053 0.947 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.522 1.880 3.146 3.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.047 4.047 3 C -0.158 4.158 4 N -0.296 5.296 5 C -0.145 4.145 6 C -0.056 4.056 7 C -0.199 4.199 8 N 0.070 4.930 9 C -0.459 4.459 10 H 0.136 0.864 11 C -0.169 4.169 12 N -0.396 5.396 13 Si 0.756 3.244 14 H -0.190 1.190 15 H -0.201 1.201 16 H -0.190 1.190 17 N -0.125 5.125 18 H 0.068 0.932 19 H 0.070 0.930 20 H 0.072 0.928 21 H 0.087 0.913 22 H 0.086 0.914 23 H 0.092 0.908 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.674 1.424 2.586 3.029 hybrid contribution 0.326 0.901 -0.615 1.138 sum -0.348 2.325 1.972 3.068 Atomic orbital electron populations 1.21667 0.95674 1.00328 1.01998 1.19393 0.94910 0.88887 1.01555 1.23717 1.06423 0.98061 0.87561 1.69787 1.25376 1.03199 1.31271 1.23345 1.11045 0.95979 0.84088 1.19539 0.97509 0.92229 0.96282 1.21686 0.98242 0.98827 1.01175 1.46207 1.34304 1.08868 1.03629 1.19883 1.45740 0.91775 0.88527 0.86391 1.25658 0.95539 0.98144 0.97510 1.70189 1.33731 1.24115 1.11579 0.85919 0.79689 0.80163 0.78589 1.19031 1.20092 1.19033 1.78731 1.23712 0.90733 1.19321 0.93193 0.92959 0.92772 0.91325 0.91376 0.90789 0.91219 0.93025 0.92661 0.92751 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.89 37.16 0.37 -2.15 15 2 C -0.01 -0.15 6.56 -27.89 -0.18 -0.34 15 3 C 0.12 3.16 7.39 -156.64 -1.16 2.00 15 4 N -0.56 -14.83 11.19 -7.92 -0.09 -14.92 15 5 C 0.12 3.08 7.22 -154.91 -1.12 1.96 15 6 C -0.02 -0.31 6.19 -27.88 -0.17 -0.48 15 7 C -0.14 -2.45 9.89 37.16 0.37 -2.08 15 8 N -0.15 -4.35 3.74 -8.96 -0.03 -4.39 15 9 C -0.32 -8.66 9.99 -14.76 -0.15 -8.81 15 10 H 0.12 2.81 7.11 -52.49 -0.37 2.44 15 11 C 0.05 1.28 5.50 -17.51 -0.10 1.18 15 12 N -0.77 -21.37 11.88 55.50 0.66 -20.71 15 13 Si 0.93 18.85 29.55 -169.99 -5.02 13.82 15 14 H -0.27 -5.21 7.11 56.52 0.40 -4.80 15 15 H -0.28 -5.51 7.11 56.52 0.40 -5.11 15 16 H -0.27 -5.21 7.11 56.52 0.40 -4.80 15 17 N -0.29 -8.35 10.61 32.46 0.34 -8.00 15 18 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 19 H 0.05 0.96 8.14 -51.92 -0.42 0.54 15 20 H 0.05 1.06 8.14 -51.93 -0.42 0.64 15 21 H 0.07 1.37 8.14 -51.93 -0.42 0.95 15 22 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 23 H 0.07 1.35 8.14 -51.93 -0.42 0.92 15 24 H 0.07 1.30 7.40 -51.93 -0.38 0.92 15 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 15 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 15 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 15 28 H 0.28 7.01 8.31 -40.82 -0.34 6.67 15 LS Contribution 247.04 15.07 3.72 3.72 Total: -1.00 -31.98 247.04 -6.26 -38.23 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -3.70 Total: 0.97 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -2.14 Total: -8.72 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 0.88 Total: -48.03 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.82 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -31.98 -6.26 -38.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084065794.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.902 kcal (2) G-P(sol) polarization free energy of solvation -31.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds