Wall clock time and date at job start Mon Mar 30 2020 01:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 109.47329 * 2 1 4 4 N 1.33369 * 125.45396 * 89.99977 * 3 2 1 5 5 C 1.30817 * 109.87475 * 180.02562 * 4 3 2 6 6 C 1.50699 * 126.02077 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47053 * 270.00089 * 6 5 4 8 8 N 1.35307 * 107.95924 * 359.97438 * 5 4 3 9 9 C 1.37432 * 126.87361 * 179.97438 * 8 5 4 10 10 H 1.08002 * 120.00214 * 0.02562 * 9 8 5 11 11 C 1.39001 * 120.00091 * 179.72479 * 9 8 5 12 12 N 1.31274 * 119.99934 * 0.27690 * 11 9 8 13 13 Si 1.86798 * 120.00317 * 180.27837 * 11 9 8 14 14 H 1.48504 * 109.47252 * 59.99994 * 13 11 9 15 15 H 1.48498 * 109.47594 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46858 * 300.00059 * 13 11 9 17 17 N 1.30834 * 125.45855 * 270.28782 * 3 2 1 18 18 H 1.09004 * 109.47232 * 180.02562 * 1 2 3 19 19 H 1.09010 * 109.46997 * 299.99635 * 1 2 3 20 20 H 1.08997 * 109.47125 * 60.00116 * 1 2 3 21 21 H 1.09004 * 109.47026 * 239.99912 * 2 1 3 22 22 H 1.09001 * 109.47412 * 120.00575 * 2 1 3 23 23 H 1.09003 * 109.47273 * 29.99753 * 6 5 4 24 24 H 1.08996 * 109.47170 * 149.99995 * 6 5 4 25 25 H 1.08998 * 109.46950 * 180.02562 * 7 6 5 26 26 H 1.09001 * 109.47020 * 299.99447 * 7 6 5 27 27 H 1.08996 * 109.47210 * 59.99930 * 7 6 5 28 28 H 0.97005 * 119.99949 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2902 2.1501 1.0864 5 6 2.7098 3.3383 0.7351 6 6 3.1038 4.4516 1.6711 7 6 1.8771 5.3090 1.9889 8 7 2.7287 3.3912 -0.6168 9 6 3.1055 4.4594 -1.3951 10 1 3.4299 5.3786 -0.9301 11 6 3.0750 4.3547 -2.7809 12 7 2.6811 3.2373 -3.3462 13 14 3.5945 5.8040 -3.8388 14 1 5.0050 6.1570 -3.5367 15 1 3.4713 5.4394 -5.2730 16 1 2.7196 6.9681 -3.5476 17 7 2.2803 2.1381 -1.0657 18 1 -0.3634 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8901 20 1 -0.3633 0.5138 -0.8900 21 1 1.8933 -0.5139 -0.8900 22 1 1.8934 -0.5139 0.8899 23 1 3.4996 4.0275 2.5940 24 1 3.8670 5.0703 1.1990 25 1 2.1622 6.1145 2.6656 26 1 1.4813 5.7332 1.0661 27 1 1.1139 4.6903 2.4610 28 1 2.6595 3.1644 -4.3132 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084065794.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:29 Heat of formation + Delta-G solvation = 42.840297 kcal Electronic energy + Delta-G solvation = -12298.753103 eV Core-core repulsion = 10157.032537 eV Total energy + Delta-G solvation = -2141.720566 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.24712 -36.19628 -35.05848 -33.78680 -32.37146 -30.22375 -27.31686 -24.96266 -24.56337 -21.39728 -20.73240 -19.39693 -17.33097 -16.26635 -15.98762 -15.48463 -15.22235 -14.77446 -14.53595 -13.71617 -13.48457 -13.23216 -13.13866 -12.80695 -12.60462 -12.31069 -12.23475 -12.03782 -11.85478 -11.63657 -11.48790 -10.28466 -10.17919 -9.73877 -8.54520 -6.41773 1.24327 1.37306 1.53498 1.69493 2.09796 2.43539 2.72594 3.03090 3.64786 4.09787 4.26405 4.32316 4.51087 4.55537 4.68133 4.69165 4.91027 4.99908 5.04745 5.11193 5.13479 5.32315 5.35415 5.38796 5.87748 6.14552 6.42586 6.76830 7.36010 8.00882 8.45598 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.030807 B = 0.014293 C = 0.010420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.653431 B = 1958.504704 C = 2686.595341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.009 4.009 3 C 0.111 3.889 4 N -0.580 5.580 5 C 0.114 3.886 6 C -0.017 4.017 7 C -0.131 4.131 8 N -0.180 5.180 9 C -0.356 4.356 10 H 0.140 0.860 11 C -0.001 4.001 12 N -0.819 5.819 13 Si 1.017 2.983 14 H -0.252 1.252 15 H -0.275 1.275 16 H -0.253 1.253 17 N -0.336 5.336 18 H 0.092 0.908 19 H 0.046 0.954 20 H 0.031 0.969 21 H 0.071 0.929 22 H 0.088 0.912 23 H 0.092 0.908 24 H 0.081 0.919 25 H 0.094 0.906 26 H 0.037 0.963 27 H 0.044 0.956 28 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.224 3.043 3.762 4.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.049 4.049 3 C -0.168 4.168 4 N -0.314 5.314 5 C -0.151 4.151 6 C -0.057 4.057 7 C -0.189 4.189 8 N 0.045 4.955 9 C -0.489 4.489 10 H 0.157 0.843 11 C -0.214 4.214 12 N -0.447 5.447 13 Si 0.835 3.165 14 H -0.176 1.176 15 H -0.200 1.200 16 H -0.176 1.176 17 N -0.175 5.175 18 H 0.111 0.889 19 H 0.065 0.935 20 H 0.051 0.949 21 H 0.089 0.911 22 H 0.106 0.894 23 H 0.110 0.890 24 H 0.100 0.900 25 H 0.113 0.887 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.377 2.590 3.217 4.147 hybrid contribution 0.227 0.479 -0.706 0.883 sum -0.149 3.069 2.511 3.968 Atomic orbital electron populations 1.21577 0.93651 1.02688 1.00593 1.19629 0.96590 0.86101 1.02613 1.24715 1.05212 0.99825 0.87014 1.69850 1.26279 1.03821 1.31423 1.24509 1.09309 0.97054 0.84251 1.19814 0.98919 0.91125 0.95818 1.21612 0.96764 0.99347 1.01182 1.46469 1.35324 1.09030 1.04701 1.20591 1.46448 0.92376 0.89452 0.84263 1.26896 0.94674 1.01270 0.98588 1.70353 1.35400 1.26893 1.12040 0.84686 0.79854 0.75979 0.75964 1.17608 1.19985 1.17647 1.78621 1.25480 0.91985 1.21426 0.88913 0.93485 0.94944 0.91079 0.89353 0.88981 0.90027 0.88697 0.94357 0.93700 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 9.89 71.98 0.71 -3.78 15 2 C -0.01 -0.39 6.56 29.85 0.20 -0.19 15 3 C 0.11 5.90 7.39 138.55 1.02 6.93 15 4 N -0.58 -30.67 11.19 -178.96 -2.00 -32.67 15 5 C 0.11 5.86 7.22 137.95 1.00 6.85 15 6 C -0.02 -0.64 6.19 29.85 0.18 -0.46 15 7 C -0.13 -4.27 9.89 71.98 0.71 -3.56 15 8 N -0.18 -10.30 3.74 -182.27 -0.68 -10.98 15 9 C -0.36 -19.07 9.99 84.00 0.84 -18.23 15 10 H 0.14 6.52 7.11 -2.91 -0.02 6.50 15 11 C 0.00 -0.07 5.50 84.96 0.47 0.39 15 12 N -0.82 -46.68 11.88 21.66 0.26 -46.42 15 13 Si 1.02 38.18 29.55 68.60 2.03 40.21 15 14 H -0.25 -8.85 7.11 99.48 0.71 -8.14 15 15 H -0.28 -10.15 7.11 99.48 0.71 -9.45 15 16 H -0.25 -8.88 7.11 99.48 0.71 -8.17 15 17 N -0.34 -20.19 10.61 -51.21 -0.54 -20.74 15 18 H 0.09 2.48 8.14 -2.39 -0.02 2.46 15 19 H 0.05 1.69 8.14 -2.38 -0.02 1.67 15 20 H 0.03 1.26 8.14 -2.39 -0.02 1.24 15 21 H 0.07 2.85 8.14 -2.39 -0.02 2.83 15 22 H 0.09 3.23 8.14 -2.39 -0.02 3.21 15 23 H 0.09 3.14 8.14 -2.39 -0.02 3.12 15 24 H 0.08 2.88 7.40 -2.39 -0.02 2.87 15 25 H 0.09 2.28 8.14 -2.39 -0.02 2.27 15 26 H 0.04 1.36 8.14 -2.39 -0.02 1.34 15 27 H 0.04 1.53 8.14 -2.39 -0.02 1.51 15 28 H 0.28 14.54 8.31 -92.70 -0.77 13.77 15 Total: -1.00 -70.96 247.04 5.33 -65.63 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 1.14 Total: 17.02 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 5.13 Total: -12.06 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -2.97 Total: -110.81 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Total: -70.96 5.33 -65.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084065794.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.472 kcal (2) G-P(sol) polarization free energy of solvation -70.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds