Wall clock time and date at job start Mon Mar 30 2020 03:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47254 * 179.97438 * 10 9 7 12 12 C 1.46904 * 111.00029 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.63875 * 34.58357 * 12 11 10 14 14 C 1.53022 * 109.64416 * 273.94660 * 12 11 10 15 15 C 1.50065 * 110.14515 * 190.88132 * 14 12 11 16 16 C 1.29438 * 124.07892 * 17.12766 * 15 14 12 17 17 C 1.50067 * 124.07545 * 359.53381 * 16 15 14 18 18 C 1.53026 * 110.14678 * 17.13099 * 17 16 15 19 19 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 21 21 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 22 22 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 23 23 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 24 24 H 1.00902 * 111.00582 * 303.95797 * 11 10 9 25 25 H 1.08997 * 109.35742 * 311.08899 * 14 12 11 26 26 H 1.09005 * 109.35784 * 70.66817 * 14 12 11 27 27 H 1.08004 * 117.96043 * 197.11314 * 15 14 12 28 28 H 1.07998 * 117.96627 * 179.51018 * 16 15 14 29 29 H 1.08996 * 109.35794 * 256.92640 * 17 16 15 30 30 H 1.09001 * 109.36050 * 137.33368 * 17 16 15 31 31 H 1.08993 * 109.64273 * 190.87890 * 18 17 16 32 32 H 1.09001 * 109.81532 * 70.34751 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 2.4350 -6.0760 0.0006 13 1 3.3229 -5.8288 0.5826 14 6 2.8348 -6.4135 -1.4375 15 6 3.5590 -7.7272 -1.4778 16 6 3.5307 -8.6006 -0.5229 17 6 2.7777 -8.4173 0.7621 18 6 1.7423 -7.3006 0.6117 19 1 -0.4850 0.8401 -0.0004 20 1 0.6246 -2.5571 -0.8897 21 1 0.6240 -2.5566 0.8902 22 1 2.8718 -3.6044 0.8905 23 1 2.8718 -3.6044 -0.8895 24 1 0.8743 -4.9842 0.7827 25 1 1.9397 -6.4752 -2.0563 26 1 3.4859 -5.6298 -1.8249 27 1 4.1399 -7.9583 -2.3585 28 1 4.0829 -9.5186 -0.6597 29 1 3.4770 -8.1570 1.5566 30 1 2.2710 -9.3474 1.0199 31 1 1.3373 -7.0422 1.5900 32 1 0.9358 -7.6302 -0.0433 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084067862.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:27 Heat of formation + Delta-G solvation = -8.415761 kcal Electronic energy + Delta-G solvation = -11976.965301 eV Core-core repulsion = 9936.562449 eV Total energy + Delta-G solvation = -2040.402852 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.66124 -35.07802 -32.84354 -30.79745 -30.17769 -27.55310 -24.16173 -22.91037 -21.13903 -20.39789 -17.68161 -16.42598 -15.94982 -15.08175 -14.45228 -14.20020 -13.73093 -13.10759 -12.90576 -12.65099 -12.27786 -12.21863 -11.99515 -11.15702 -10.94396 -10.81995 -10.66334 -10.37357 -10.15466 -9.92821 -9.30773 -9.10900 -8.91247 -8.33190 -7.77521 -5.97741 -4.00210 2.34542 3.33574 3.39477 3.42833 4.44094 4.63686 4.80782 4.92332 5.23401 5.38158 5.40446 5.44742 5.65458 5.69760 5.80348 5.86938 6.09529 6.17462 6.26255 6.35087 6.39586 6.55829 6.72939 7.00461 7.03430 7.54899 7.76679 7.86535 8.01140 8.12090 8.46506 9.07187 9.63468 11.13750 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.079163 B = 0.006192 C = 0.006000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 353.614565 B = 4520.925729 C = 4665.904479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.689 5.689 12 C 0.086 3.914 13 H 0.040 0.960 14 C -0.083 4.083 15 C -0.144 4.144 16 C -0.169 4.169 17 C -0.087 4.087 18 C -0.121 4.121 19 H 0.260 0.740 20 H 0.025 0.975 21 H 0.013 0.987 22 H 0.014 0.986 23 H 0.057 0.943 24 H 0.337 0.663 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.149 -14.659 0.285 15.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.320 5.320 12 C -0.024 4.024 13 H 0.058 0.942 14 C -0.120 4.120 15 C -0.163 4.163 16 C -0.187 4.187 17 C -0.124 4.124 18 C -0.159 4.159 19 H 0.070 0.930 20 H 0.043 0.957 21 H 0.032 0.968 22 H 0.032 0.968 23 H 0.076 0.924 24 H 0.155 0.845 25 H 0.101 0.899 26 H 0.088 0.912 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.913 -14.535 -0.393 15.348 hybrid contribution 0.870 0.949 0.835 1.534 sum 5.783 -13.586 0.442 14.772 Atomic orbital electron populations 1.69979 1.06034 1.26556 1.50736 1.25003 0.94837 0.99199 0.95320 0.86588 0.79791 0.83461 0.78116 1.20625 1.21219 1.19942 1.21188 0.92979 0.91066 1.50783 0.92800 1.19072 0.94044 0.90470 0.97683 1.22189 0.96908 0.88561 0.98513 1.60587 1.19720 1.01953 1.49748 1.21517 0.94611 0.90752 0.95516 0.94210 1.20472 1.00010 0.94101 0.97428 1.22173 0.99513 0.96057 0.98540 1.21987 1.01349 0.99188 0.96187 1.20405 0.97364 0.98745 0.95899 1.21796 0.98156 0.95073 1.00869 0.93010 0.95670 0.96838 0.96782 0.92419 0.84528 0.89899 0.91210 0.88190 0.88395 0.91248 0.91301 0.91856 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.27 13.29 55.43 0.74 -26.53 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.66 5.23 -27.89 -0.15 0.51 16 10 C 0.07 1.44 5.43 -3.83 -0.02 1.42 16 11 N -0.69 -12.64 6.32 -106.49 -0.67 -13.31 16 12 C 0.09 1.32 2.54 -67.49 -0.17 1.15 16 13 H 0.04 0.64 7.79 -51.93 -0.40 0.24 16 14 C -0.08 -1.19 5.59 -28.18 -0.16 -1.35 16 15 C -0.14 -1.77 9.80 -35.90 -0.35 -2.12 16 16 C -0.17 -1.91 9.80 -35.90 -0.35 -2.26 16 17 C -0.09 -0.94 6.12 -28.18 -0.17 -1.12 16 18 C -0.12 -1.53 5.36 -26.51 -0.14 -1.67 16 19 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 20 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.01 0.30 8.06 -51.93 -0.42 -0.12 16 23 H 0.06 1.26 7.76 -51.93 -0.40 0.85 16 24 H 0.34 5.94 8.28 -39.29 -0.33 5.61 16 25 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 26 H 0.07 1.06 7.83 -51.93 -0.41 0.65 16 27 H 0.10 1.07 8.06 -52.48 -0.42 0.65 16 28 H 0.10 0.94 8.06 -52.49 -0.42 0.51 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.76 8.00 -51.93 -0.42 0.34 16 32 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 LS Contribution 263.62 15.07 3.97 3.97 Total: -1.00 -30.04 263.62 -8.21 -38.24 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -5.30 Total: -0.02 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -1.93 Total: -19.23 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.06 Total: -39.84 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.04 -8.21 -38.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084067862.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.825 kcal (2) G-P(sol) polarization free energy of solvation -30.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds