Wall clock time and date at job start Mon Mar 30 2020 03:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47254 * 179.97438 * 10 9 7 12 12 C 1.46904 * 111.00029 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.63875 * 34.58357 * 12 11 10 14 14 C 1.53022 * 109.64416 * 273.94660 * 12 11 10 15 15 C 1.50065 * 110.14515 * 190.88132 * 14 12 11 16 16 C 1.29438 * 124.07892 * 17.12766 * 15 14 12 17 17 C 1.50067 * 124.07545 * 359.53381 * 16 15 14 18 18 C 1.53026 * 110.14678 * 17.13099 * 17 16 15 19 19 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 21 21 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 22 22 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 23 23 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 24 24 H 1.00902 * 111.00582 * 303.95797 * 11 10 9 25 25 H 1.08997 * 109.35742 * 311.08899 * 14 12 11 26 26 H 1.09005 * 109.35784 * 70.66817 * 14 12 11 27 27 H 1.08004 * 117.96043 * 197.11314 * 15 14 12 28 28 H 1.07998 * 117.96627 * 179.51018 * 16 15 14 29 29 H 1.08996 * 109.35794 * 256.92640 * 17 16 15 30 30 H 1.09001 * 109.36050 * 137.33368 * 17 16 15 31 31 H 1.08993 * 109.64273 * 190.87890 * 18 17 16 32 32 H 1.09001 * 109.81532 * 70.34751 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 2.4350 -6.0760 0.0006 13 1 3.3229 -5.8288 0.5826 14 6 2.8348 -6.4135 -1.4375 15 6 3.5590 -7.7272 -1.4778 16 6 3.5307 -8.6006 -0.5229 17 6 2.7777 -8.4173 0.7621 18 6 1.7423 -7.3006 0.6117 19 1 -0.4850 0.8401 -0.0004 20 1 0.6246 -2.5571 -0.8897 21 1 0.6240 -2.5566 0.8902 22 1 2.8718 -3.6044 0.8905 23 1 2.8718 -3.6044 -0.8895 24 1 0.8743 -4.9842 0.7827 25 1 1.9397 -6.4752 -2.0563 26 1 3.4859 -5.6298 -1.8249 27 1 4.1399 -7.9583 -2.3585 28 1 4.0829 -9.5186 -0.6597 29 1 3.4770 -8.1570 1.5566 30 1 2.2710 -9.3474 1.0199 31 1 1.3373 -7.0422 1.5900 32 1 0.9358 -7.6302 -0.0433 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084067862.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:27 Heat of formation + Delta-G solvation = -27.202845 kcal Electronic energy + Delta-G solvation = -11977.779970 eV Core-core repulsion = 9936.562449 eV Total energy + Delta-G solvation = -2041.217521 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.79679 -36.66304 -34.84667 -32.07763 -31.57077 -29.16008 -26.04798 -24.07689 -22.37419 -22.25416 -18.69895 -18.53065 -17.18872 -16.55096 -16.32499 -15.63550 -15.07386 -14.52968 -14.30598 -13.94921 -13.84869 -13.46343 -13.15267 -13.09603 -12.85095 -12.46279 -12.19194 -11.82084 -11.63348 -11.39808 -11.19566 -11.04696 -10.57341 -9.84427 -9.30283 -8.21157 -6.33033 1.39970 1.41864 1.44166 1.52884 2.40130 3.12146 3.27739 3.79246 3.91057 4.17135 4.38966 4.43439 4.49940 4.53656 4.62328 4.71707 4.78899 4.98760 5.01393 5.03830 5.13285 5.26171 5.35570 5.45447 5.66339 5.76655 5.81716 6.08354 6.15166 6.29328 6.56100 6.84050 7.36368 8.91118 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.079163 B = 0.006192 C = 0.006000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 353.614565 B = 4520.925729 C = 4665.904479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.032 3.968 10 C 0.086 3.914 11 N -0.694 5.694 12 C 0.084 3.916 13 H 0.034 0.966 14 C -0.081 4.081 15 C -0.163 4.163 16 C -0.159 4.159 17 C -0.087 4.087 18 C -0.117 4.117 19 H 0.264 0.736 20 H -0.006 1.006 21 H -0.008 1.008 22 H 0.016 0.984 23 H 0.054 0.946 24 H 0.340 0.660 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.115 0.885 28 H 0.123 0.877 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.450 -15.504 0.667 16.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.006 4.006 10 C -0.043 4.043 11 N -0.325 5.325 12 C -0.026 4.026 13 H 0.052 0.948 14 C -0.119 4.119 15 C -0.181 4.181 16 C -0.177 4.177 17 C -0.124 4.124 18 C -0.155 4.155 19 H 0.073 0.927 20 H 0.012 0.988 21 H 0.010 0.990 22 H 0.034 0.966 23 H 0.073 0.927 24 H 0.158 0.842 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.133 0.867 28 H 0.140 0.860 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.222 -15.405 -0.012 16.614 hybrid contribution 0.421 1.156 0.729 1.430 sum 6.643 -14.248 0.717 15.737 Atomic orbital electron populations 1.70112 1.07846 1.27858 1.51350 1.25986 0.95782 1.03401 0.94514 0.85402 0.78598 0.78202 0.78557 1.19702 1.20537 1.18754 1.21612 0.93493 0.92317 1.51097 0.92281 1.18922 0.94289 0.92287 0.95065 1.21790 0.95532 0.88578 0.98386 1.60517 1.20278 1.01645 1.50108 1.21627 0.93997 0.90560 0.96397 0.94761 1.20405 0.99613 0.95364 0.96479 1.22139 1.00667 0.95235 1.00056 1.22270 1.00354 0.99506 0.95578 1.20473 0.97067 0.98870 0.96037 1.21770 0.98501 0.94384 1.00818 0.92681 0.98762 0.98951 0.96621 0.92701 0.84164 0.91056 0.92644 0.86734 0.85956 0.90506 0.88977 0.91209 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.73 13.29 21.45 0.28 -57.44 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 44.84 29.54 68.60 2.03 46.86 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.55 -32.01 9.11 25.60 0.23 -31.78 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.75 5.23 29.85 0.16 1.91 16 10 C 0.09 3.80 5.43 86.30 0.47 4.27 16 11 N -0.69 -25.74 6.32 -490.84 -3.10 -28.84 16 12 C 0.08 2.51 2.54 45.05 0.11 2.63 16 13 H 0.03 1.08 7.79 -2.39 -0.02 1.06 16 14 C -0.08 -2.32 5.59 29.66 0.17 -2.15 16 15 C -0.16 -3.69 9.80 27.04 0.27 -3.43 16 16 C -0.16 -3.11 9.80 27.04 0.27 -2.85 16 17 C -0.09 -1.63 6.12 29.66 0.18 -1.45 16 18 C -0.12 -2.76 5.36 30.74 0.16 -2.59 16 19 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 20 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 21 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 22 H 0.02 0.68 8.06 -2.39 -0.02 0.66 16 23 H 0.05 2.43 7.76 -2.39 -0.02 2.41 16 24 H 0.34 12.11 8.28 -89.69 -0.74 11.37 16 25 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.05 1.70 7.83 -2.38 -0.02 1.68 16 27 H 0.11 2.24 8.06 -2.91 -0.02 2.22 16 28 H 0.12 1.85 8.06 -2.91 -0.02 1.82 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.55 8.00 -2.39 -0.02 1.53 16 32 H 0.07 1.66 8.13 -2.39 -0.02 1.64 16 Total: -1.00 -64.40 263.62 2.02 -62.39 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.33 Total: 11.95 kcal Atomic # 6 Polarization: -37.40 SS G_CDS: 2.48 Total: -34.92 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -2.82 Total: -86.28 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -64.40 2.02 -62.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084067862.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.186 kcal (2) G-P(sol) polarization free energy of solvation -64.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds