Wall clock time and date at job start Mon Mar 30 2020 01:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35044 * 126.39523 * 2 1 4 4 N 1.30501 * 108.69892 * 179.97438 * 3 2 1 5 5 C 1.34134 * 109.25535 * 359.97438 * 4 3 2 6 6 C 1.34668 * 108.01972 * 0.02562 * 5 4 3 7 7 C 1.50703 * 126.58748 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.46672 * 245.02291 * 7 6 5 9 9 N 1.46903 * 109.47068 * 125.02621 * 7 6 5 10 10 C 1.50690 * 109.47206 * 5.01887 * 7 6 5 11 11 H 1.07997 * 120.00525 * 0.02562 * 10 7 6 12 12 C 1.37886 * 119.99805 * 179.97438 * 10 7 6 13 13 N 1.31507 * 120.00025 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99833 * 180.02562 * 12 10 7 15 15 H 1.48507 * 109.46939 * 60.00178 * 14 12 10 16 16 H 1.48502 * 109.46854 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47045 * 300.00491 * 14 12 10 18 18 H 1.09001 * 109.47253 * 269.99983 * 1 2 3 19 19 H 1.08997 * 109.46870 * 30.00133 * 1 2 3 20 20 H 1.09004 * 109.46937 * 150.00289 * 1 2 3 21 21 H 1.07996 * 125.65229 * 359.97438 * 3 2 1 22 22 H 1.08001 * 125.98356 * 179.97438 * 5 4 3 23 23 H 1.09001 * 109.47354 * 59.99881 * 8 7 6 24 24 H 1.08999 * 109.46679 * 180.02562 * 8 7 6 25 25 H 1.09006 * 109.46806 * 299.99901 * 8 7 6 26 26 H 1.00907 * 110.99408 * 299.99531 * 9 7 6 27 27 H 1.00897 * 110.99802 * 63.94485 * 9 7 6 28 28 H 0.96999 * 120.00036 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6903 0.0006 5 6 3.5460 -0.6505 0.0015 6 6 2.2772 -1.1018 0.0009 7 6 1.8364 -2.5429 0.0011 8 6 1.1054 -2.8526 -1.3069 9 7 0.9324 -2.7783 1.1349 10 6 3.0427 -3.4372 0.1262 11 1 4.0299 -3.0054 0.1989 12 6 2.8861 -4.8069 0.1491 13 7 1.6840 -5.3328 0.0611 14 14 4.3815 -5.9156 0.3049 15 1 5.0908 -5.6143 1.5744 16 1 3.9470 -7.3356 0.3049 17 1 5.2954 -5.6779 -0.8411 18 1 -0.3634 0.0000 1.0277 19 1 -0.3633 0.8900 -0.5138 20 1 -0.3633 -0.8900 -0.5138 21 1 1.9334 2.1144 -0.0004 22 1 4.4369 -1.2611 0.0017 23 1 1.7761 -2.6779 -2.1481 24 1 0.7862 -3.8948 -1.3066 25 1 0.2328 -2.2057 -1.3974 26 1 1.3923 -2.5806 2.0110 27 1 0.0858 -2.2375 1.0406 28 1 1.5738 -6.2964 0.0768 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084330270.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:25 Heat of formation + Delta-G solvation = 48.992980 kcal Electronic energy + Delta-G solvation = -12678.418539 eV Core-core repulsion = 10536.964773 eV Total energy + Delta-G solvation = -2141.453766 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.86920 -37.37799 -34.81425 -33.40373 -30.26776 -28.93137 -27.69880 -27.15825 -23.00439 -22.11104 -20.42629 -18.00340 -17.88107 -16.50574 -16.38621 -16.05810 -15.27440 -14.86855 -14.49248 -14.20040 -13.79455 -13.52097 -13.12845 -12.77973 -12.63986 -12.37671 -12.20062 -11.87188 -11.16011 -10.69449 -10.45267 -10.28158 -9.28754 -8.82769 -7.90723 -6.11055 1.33233 1.48019 1.48561 1.54820 2.09810 2.35614 2.52450 3.30853 3.94337 4.02180 4.13778 4.30505 4.40041 4.53946 4.69852 4.96397 5.04583 5.19039 5.31113 5.47579 5.77480 5.86807 6.08058 6.34944 6.54549 6.67598 7.03697 7.24907 7.30814 7.60267 9.08420 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.049320 B = 0.013221 C = 0.011223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.586641 B = 2117.255027 C = 2494.190351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.463 5.463 3 C 0.164 3.836 4 N -0.536 5.536 5 C -0.062 4.062 6 C -0.023 4.023 7 C 0.314 3.686 8 C -0.117 4.117 9 N -0.810 5.810 10 C -0.540 4.540 11 H 0.050 0.950 12 C 0.046 3.954 13 N -0.867 5.867 14 Si 0.940 3.060 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.277 1.277 18 H 0.087 0.913 19 H 0.119 0.881 20 H 0.081 0.919 21 H 0.242 0.758 22 H 0.149 0.851 23 H 0.020 0.980 24 H 0.071 0.929 25 H 0.033 0.967 26 H 0.320 0.680 27 H 0.310 0.690 28 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.136 8.666 -0.104 10.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.146 5.146 3 C -0.118 4.118 4 N -0.256 5.256 5 C -0.208 4.208 6 C -0.141 4.141 7 C 0.221 3.779 8 C -0.176 4.176 9 N -0.337 5.337 10 C -0.579 4.579 11 H 0.068 0.932 12 C -0.158 4.158 13 N -0.503 5.503 14 Si 0.767 3.233 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.203 1.203 18 H 0.106 0.894 19 H 0.138 0.862 20 H 0.100 0.900 21 H 0.258 0.742 22 H 0.166 0.834 23 H 0.039 0.961 24 H 0.090 0.910 25 H 0.052 0.948 26 H 0.131 0.869 27 H 0.123 0.877 28 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.763 8.224 -0.361 9.510 hybrid contribution 0.435 -0.290 0.279 0.593 sum -4.328 7.933 -0.082 9.037 Atomic orbital electron populations 1.22448 0.75095 1.05988 1.04646 1.45462 1.08593 1.06001 1.54565 1.25588 0.85255 0.94769 1.06202 1.70132 1.21652 1.12198 1.21611 1.22033 0.97083 0.90633 1.11074 1.23203 0.91536 0.92499 1.06869 1.16870 0.90968 0.81009 0.89037 1.21710 0.97018 1.02665 0.96172 1.59103 1.07385 1.63308 1.03904 1.21080 0.92028 0.91271 1.53520 0.93193 1.25438 0.97380 0.98910 0.94092 1.70106 1.21719 1.10765 1.47690 0.85932 0.80832 0.78190 0.78367 1.20406 1.21032 1.20292 0.89431 0.86239 0.90035 0.74160 0.83390 0.96123 0.90990 0.94794 0.86897 0.87743 0.93671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.35 9.62 127.77 1.23 2.58 15 2 N -0.46 -15.30 3.15 -537.89 -1.70 -16.99 15 3 C 0.16 5.25 12.56 180.26 2.26 7.52 15 4 N -0.54 -22.09 11.25 -200.31 -2.25 -24.34 15 5 C -0.06 -2.84 10.91 83.52 0.91 -1.92 15 6 C -0.02 -0.99 5.68 40.95 0.23 -0.76 15 7 C 0.31 14.72 0.53 2.03 0.00 14.72 15 8 C -0.12 -5.42 8.41 71.98 0.61 -4.81 15 9 N -0.81 -35.68 8.17 -157.51 -1.29 -36.97 15 10 C -0.54 -28.92 7.95 25.60 0.20 -28.71 15 11 H 0.05 2.73 5.72 -2.91 -0.02 2.71 15 12 C 0.05 2.46 5.23 84.66 0.44 2.91 15 13 N -0.87 -47.70 10.80 21.45 0.23 -47.47 15 14 Si 0.94 43.33 29.54 68.60 2.03 45.36 15 15 H -0.28 -12.78 7.11 99.48 0.71 -12.08 15 16 H -0.28 -12.87 7.11 99.48 0.71 -12.16 15 17 H -0.28 -12.67 7.11 99.48 0.71 -11.97 15 18 H 0.09 1.70 8.06 -2.39 -0.02 1.68 15 19 H 0.12 1.76 8.14 -2.39 -0.02 1.74 15 20 H 0.08 2.08 4.81 -2.38 -0.01 2.07 15 21 H 0.24 4.93 8.06 -2.91 -0.02 4.90 15 22 H 0.15 7.11 6.46 -2.91 -0.02 7.09 15 23 H 0.02 0.95 8.14 -2.39 -0.02 0.93 15 24 H 0.07 3.71 6.07 -2.39 -0.01 3.70 15 25 H 0.03 1.32 5.58 -2.38 -0.01 1.30 15 26 H 0.32 14.23 8.98 -89.69 -0.81 13.43 15 27 H 0.31 11.57 6.73 -89.70 -0.60 10.97 15 28 H 0.25 13.55 8.31 -92.71 -0.77 12.78 15 Total: -1.00 -64.52 230.20 2.70 -61.82 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: -0.22 Total: 27.09 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: 5.89 Total: -8.50 kcal Atomic # 7 Polarization: -120.77 SS G_CDS: -5.00 Total: -125.77 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -64.52 2.70 -61.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084330270.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.817 kcal (2) G-P(sol) polarization free energy of solvation -64.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds