Wall clock time and date at job start Mon Mar 30 2020 01:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36884 * 126.40066 * 2 1 4 4 C 1.34668 * 106.81917 * 179.97438 * 3 2 1 5 5 N 1.34127 * 108.01926 * 359.77849 * 4 3 2 6 6 C 1.30492 * 109.25744 * 0.37152 * 5 4 3 7 7 C 1.50700 * 125.65081 * 179.89518 * 6 5 4 8 8 C 1.53000 * 109.47313 * 119.68835 * 7 6 5 9 9 N 1.46900 * 109.47395 * 239.69131 * 7 6 5 10 10 C 1.50702 * 109.46869 * 359.68724 * 7 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 7 6 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 7 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 7 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 H 1.08997 * 109.47868 * 270.02418 * 1 2 3 19 19 H 1.09001 * 109.47358 * 30.02881 * 1 2 3 20 20 H 1.09008 * 109.47009 * 150.02788 * 1 2 3 21 21 H 1.08001 * 126.58673 * 0.02562 * 3 2 1 22 22 H 1.07996 * 125.98234 * 180.02562 * 4 3 2 23 23 H 1.09004 * 109.47084 * 299.99675 * 8 7 6 24 24 H 1.08994 * 109.47175 * 60.00247 * 8 7 6 25 25 H 1.09001 * 109.47192 * 180.02562 * 8 7 6 26 26 H 1.00903 * 111.00086 * 59.99217 * 9 7 6 27 27 H 1.00902 * 111.00206 * 183.95155 * 9 7 6 28 28 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6504 0.0006 5 7 3.5095 -0.6903 0.0059 6 6 2.2663 -1.0870 0.0006 7 6 1.8018 -2.5206 0.0016 8 6 0.9587 -2.7827 1.2512 9 7 0.9919 -2.7738 -1.1975 10 6 2.9986 -3.4364 0.0020 11 1 3.9959 -3.0218 0.0019 12 6 2.8204 -4.8037 0.0087 13 7 1.6061 -5.3085 0.0092 14 14 4.3039 -5.9388 0.0169 15 1 5.1204 -5.6775 1.2295 16 1 3.8462 -7.3515 0.0228 17 1 5.1245 -5.6899 -1.1955 18 1 -0.3635 0.0004 1.0276 19 1 -0.3634 0.8897 -0.5143 20 1 -0.3633 -0.8903 -0.5134 21 1 1.9613 2.1345 0.0004 22 1 4.4368 1.2611 0.0011 23 1 1.5597 -2.5949 2.1410 24 1 0.0931 -2.1203 1.2509 25 1 0.6230 -3.8197 1.2521 26 1 1.5267 -2.6076 -2.0368 27 1 0.6150 -3.7098 -1.1883 28 1 1.4807 -6.2704 0.0135 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084330275.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:47 Heat of formation + Delta-G solvation = 62.986587 kcal Electronic energy + Delta-G solvation = -12680.738402 eV Core-core repulsion = 10539.891445 eV Total energy + Delta-G solvation = -2140.846957 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.18986 -35.51797 -33.18674 -31.36241 -28.48582 -27.12683 -26.28354 -25.15035 -21.47468 -20.45759 -18.51896 -16.22379 -16.00668 -14.91162 -14.72088 -14.01292 -13.65541 -12.90273 -12.88076 -12.54992 -12.07052 -11.97601 -11.25952 -10.97651 -10.74409 -10.51090 -10.34080 -9.88946 -9.76699 -8.91381 -8.74900 -8.51238 -7.52274 -7.28602 -6.03215 -4.13067 2.88472 3.34176 3.36771 3.42559 3.66523 4.10048 4.43064 5.21175 5.35890 5.49590 5.63535 5.70657 6.04536 6.17399 6.30653 6.50543 6.80263 6.95672 7.13086 7.34300 7.55822 7.72985 7.99112 8.07445 8.22446 8.58861 9.01500 9.05642 9.19882 9.57265 10.95967 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.049299 B = 0.013342 C = 0.011300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.822062 B = 2098.159435 C = 2477.299293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.456 5.456 3 C -0.096 4.096 4 C -0.042 4.042 5 N -0.489 5.489 6 C 0.264 3.736 7 C 0.307 3.693 8 C -0.129 4.129 9 N -0.849 5.849 10 C -0.518 4.518 11 H 0.076 0.924 12 C 0.061 3.939 13 N -0.903 5.903 14 Si 0.903 3.097 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.277 1.277 18 H 0.062 0.938 19 H 0.067 0.933 20 H 0.110 0.890 21 H 0.159 0.841 22 H 0.156 0.844 23 H 0.032 0.968 24 H 0.017 0.983 25 H 0.093 0.907 26 H 0.318 0.682 27 H 0.362 0.638 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.330 7.407 -0.227 8.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.137 5.137 3 C -0.229 4.229 4 C -0.191 4.191 5 N -0.207 5.207 6 C 0.000 4.000 7 C 0.214 3.786 8 C -0.188 4.188 9 N -0.381 5.381 10 C -0.559 4.559 11 H 0.094 0.906 12 C -0.139 4.139 13 N -0.543 5.543 14 Si 0.731 3.269 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.203 1.203 18 H 0.081 0.919 19 H 0.085 0.915 20 H 0.129 0.871 21 H 0.177 0.823 22 H 0.173 0.827 23 H 0.051 0.949 24 H 0.036 0.964 25 H 0.112 0.888 26 H 0.127 0.873 27 H 0.179 0.821 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.382 7.311 0.067 8.055 hybrid contribution 0.818 -0.568 -0.112 1.003 sum -2.563 6.742 -0.046 7.213 Atomic orbital electron populations 1.22086 0.77549 1.04800 1.02469 1.45351 1.07310 1.06571 1.54494 1.22428 0.91963 0.92207 1.16302 1.22233 0.95682 0.92348 1.08826 1.70368 1.19626 1.10086 1.20592 1.24224 0.84550 0.91332 0.99854 1.16804 0.91480 0.80909 0.89362 1.21831 0.96865 1.03616 0.96517 1.59354 1.39473 1.35404 1.03881 1.21820 0.94072 0.90397 1.49571 0.90564 1.24970 0.96200 0.98081 0.94664 1.69659 1.20096 1.12600 1.51982 0.86468 0.82699 0.78892 0.78819 1.20229 1.21498 1.20293 0.91938 0.91460 0.87137 0.82346 0.82662 0.94911 0.96360 0.88838 0.87310 0.82064 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.16 9.52 59.84 0.57 1.73 15 2 N -0.46 -8.98 3.15 -121.28 -0.38 -9.36 15 3 C -0.10 -1.73 11.58 -16.56 -0.19 -1.92 15 4 C -0.04 -0.84 11.87 -17.81 -0.21 -1.05 15 5 N -0.49 -11.98 9.99 -10.82 -0.11 -12.09 15 6 C 0.26 6.25 6.47 -155.42 -1.01 5.25 15 7 C 0.31 7.57 0.54 -133.90 -0.07 7.50 15 8 C -0.13 -3.08 8.39 37.16 0.31 -2.76 15 9 N -0.85 -19.42 7.55 -1.14 -0.01 -19.43 15 10 C -0.52 -14.27 8.07 -34.44 -0.28 -14.55 15 11 H 0.08 2.24 6.90 -52.49 -0.36 1.88 15 12 C 0.06 1.64 5.22 -17.82 -0.09 1.55 15 13 N -0.90 -23.88 9.57 55.43 0.53 -23.35 15 14 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 15 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 16 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 18 H 0.06 0.90 7.82 -51.93 -0.41 0.50 15 19 H 0.07 0.84 8.14 -51.93 -0.42 0.42 15 20 H 0.11 1.88 6.39 -51.92 -0.33 1.54 15 21 H 0.16 2.17 8.06 -52.49 -0.42 1.75 15 22 H 0.16 2.59 8.06 -52.49 -0.42 2.17 15 23 H 0.03 0.79 8.14 -51.93 -0.42 0.36 15 24 H 0.02 0.37 5.97 -51.93 -0.31 0.06 15 25 H 0.09 2.37 6.06 -51.93 -0.31 2.06 15 26 H 0.32 7.36 8.98 -39.29 -0.35 7.00 15 27 H 0.36 8.71 7.01 -39.29 -0.28 8.44 15 28 H 0.26 6.76 8.31 -40.82 -0.34 6.42 15 LS Contribution 232.60 15.07 3.51 3.51 Total: -1.00 -29.13 232.60 -5.63 -34.76 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -3.18 Total: 13.70 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -0.97 Total: -4.26 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: 0.03 Total: -64.23 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -29.13 -5.63 -34.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084330275.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.746 kcal (2) G-P(sol) polarization free energy of solvation -29.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds