Wall clock time and date at job start Mon Mar 30 2020 01:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36884 * 126.40066 * 2 1 4 4 C 1.34668 * 106.81917 * 179.97438 * 3 2 1 5 5 N 1.34127 * 108.01926 * 359.77849 * 4 3 2 6 6 C 1.30492 * 109.25744 * 0.37152 * 5 4 3 7 7 C 1.50700 * 125.65081 * 179.89518 * 6 5 4 8 8 C 1.53000 * 109.47313 * 119.68835 * 7 6 5 9 9 N 1.46900 * 109.47395 * 239.69131 * 7 6 5 10 10 C 1.50702 * 109.46869 * 359.68724 * 7 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 7 6 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 7 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 7 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 H 1.08997 * 109.47868 * 270.02418 * 1 2 3 19 19 H 1.09001 * 109.47358 * 30.02881 * 1 2 3 20 20 H 1.09008 * 109.47009 * 150.02788 * 1 2 3 21 21 H 1.08001 * 126.58673 * 0.02562 * 3 2 1 22 22 H 1.07996 * 125.98234 * 180.02562 * 4 3 2 23 23 H 1.09004 * 109.47084 * 299.99675 * 8 7 6 24 24 H 1.08994 * 109.47175 * 60.00247 * 8 7 6 25 25 H 1.09001 * 109.47192 * 180.02562 * 8 7 6 26 26 H 1.00903 * 111.00086 * 59.99217 * 9 7 6 27 27 H 1.00902 * 111.00206 * 183.95155 * 9 7 6 28 28 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6504 0.0006 5 7 3.5095 -0.6903 0.0059 6 6 2.2663 -1.0870 0.0006 7 6 1.8018 -2.5206 0.0016 8 6 0.9587 -2.7827 1.2512 9 7 0.9919 -2.7738 -1.1975 10 6 2.9986 -3.4364 0.0020 11 1 3.9959 -3.0218 0.0019 12 6 2.8204 -4.8037 0.0087 13 7 1.6061 -5.3085 0.0092 14 14 4.3039 -5.9388 0.0169 15 1 5.1204 -5.6775 1.2295 16 1 3.8462 -7.3515 0.0228 17 1 5.1245 -5.6899 -1.1955 18 1 -0.3635 0.0004 1.0276 19 1 -0.3634 0.8897 -0.5143 20 1 -0.3633 -0.8903 -0.5134 21 1 1.9613 2.1345 0.0004 22 1 4.4368 1.2611 0.0011 23 1 1.5597 -2.5949 2.1410 24 1 0.0931 -2.1203 1.2509 25 1 0.6230 -3.8197 1.2521 26 1 1.5267 -2.6076 -2.0368 27 1 0.6150 -3.7098 -1.1883 28 1 1.4807 -6.2704 0.0135 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084330275.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:46 Heat of formation + Delta-G solvation = 42.845331 kcal Electronic energy + Delta-G solvation = -12681.611793 eV Core-core repulsion = 10539.891445 eV Total energy + Delta-G solvation = -2141.720348 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.74784 -37.40511 -34.69439 -33.35008 -30.14552 -28.90584 -27.67573 -27.16597 -23.23873 -21.97776 -20.21376 -18.09928 -17.69870 -16.62760 -16.38589 -15.80278 -15.32379 -14.60780 -14.50163 -14.07835 -13.60285 -13.41173 -13.04565 -12.91420 -12.67051 -12.41927 -12.26137 -11.78910 -11.70978 -10.64077 -10.47566 -10.29589 -9.20989 -9.05102 -8.05644 -6.22577 1.37040 1.41847 1.42628 1.50610 2.22161 2.46730 2.47069 3.14007 3.90594 4.17436 4.26261 4.47482 4.53083 4.70096 4.84653 4.91024 4.99582 5.08162 5.41186 5.64317 5.74962 5.91841 6.11195 6.20150 6.54735 6.68166 6.95086 7.09566 7.46805 7.62510 8.89325 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.049299 B = 0.013342 C = 0.011300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.822062 B = 2098.159435 C = 2477.299293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.453 5.453 3 C -0.067 4.067 4 C -0.073 4.073 5 N -0.535 5.535 6 C 0.226 3.774 7 C 0.305 3.695 8 C -0.117 4.117 9 N -0.830 5.830 10 C -0.542 4.542 11 H 0.048 0.952 12 C 0.029 3.971 13 N -0.907 5.907 14 Si 0.952 3.048 15 H -0.283 1.283 16 H -0.277 1.277 17 H -0.281 1.281 18 H 0.076 0.924 19 H 0.107 0.893 20 H 0.095 0.905 21 H 0.211 0.789 22 H 0.180 0.820 23 H 0.016 0.984 24 H 0.043 0.957 25 H 0.074 0.926 26 H 0.314 0.686 27 H 0.354 0.646 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.191 8.797 -0.314 9.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.134 5.134 3 C -0.201 4.201 4 C -0.221 4.221 5 N -0.254 5.254 6 C -0.038 4.038 7 C 0.212 3.788 8 C -0.176 4.176 9 N -0.359 5.359 10 C -0.582 4.582 11 H 0.067 0.933 12 C -0.170 4.170 13 N -0.547 5.547 14 Si 0.779 3.221 15 H -0.209 1.209 16 H -0.202 1.202 17 H -0.206 1.206 18 H 0.095 0.905 19 H 0.125 0.875 20 H 0.113 0.887 21 H 0.227 0.773 22 H 0.197 0.803 23 H 0.035 0.965 24 H 0.062 0.938 25 H 0.093 0.907 26 H 0.123 0.877 27 H 0.170 0.830 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.272 8.701 -0.022 9.694 hybrid contribution 1.081 -0.910 -0.084 1.415 sum -3.191 7.792 -0.106 8.420 Atomic orbital electron populations 1.22328 0.75225 1.06078 1.03811 1.45537 1.08764 1.05965 1.53138 1.23174 0.90880 0.93659 1.12364 1.22777 0.98008 0.91142 1.10207 1.70240 1.20882 1.12784 1.21469 1.23797 0.85234 0.91754 1.02976 1.16669 0.90564 0.81783 0.89790 1.21664 0.97372 1.02939 0.95656 1.59345 1.38707 1.34563 1.03310 1.21921 0.94060 0.91542 1.50677 0.93347 1.25477 0.98261 0.98865 0.94431 1.69720 1.20692 1.12836 1.51478 0.85723 0.80293 0.77981 0.78136 1.20879 1.20223 1.20643 0.90501 0.87474 0.88673 0.77271 0.80255 0.96503 0.93766 0.90697 0.87705 0.82975 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.88 9.52 127.77 1.22 3.10 15 2 N -0.45 -16.72 3.15 -537.62 -1.69 -18.41 15 3 C -0.07 -2.18 11.58 83.09 0.96 -1.21 15 4 C -0.07 -2.83 11.87 83.52 0.99 -1.84 15 5 N -0.53 -26.28 9.99 -188.14 -1.88 -28.16 15 6 C 0.23 10.62 6.47 138.13 0.89 11.51 15 7 C 0.31 15.11 0.54 2.04 0.00 15.11 15 8 C -0.12 -5.58 8.39 71.98 0.60 -4.97 15 9 N -0.83 -37.86 7.55 -157.51 -1.19 -39.05 15 10 C -0.54 -30.46 8.07 25.60 0.21 -30.26 15 11 H 0.05 2.95 6.90 -2.91 -0.02 2.93 15 12 C 0.03 1.58 5.22 84.66 0.44 2.03 15 13 N -0.91 -47.99 9.57 21.45 0.21 -47.78 15 14 Si 0.95 44.55 29.54 68.60 2.03 46.57 15 15 H -0.28 -13.44 7.11 99.48 0.71 -12.73 15 16 H -0.28 -12.35 7.11 99.48 0.71 -11.64 15 17 H -0.28 -13.20 7.11 99.48 0.71 -12.50 15 18 H 0.08 1.94 7.82 -2.39 -0.02 1.92 15 19 H 0.11 2.15 8.14 -2.39 -0.02 2.13 15 20 H 0.09 3.00 6.39 -2.38 -0.02 2.99 15 21 H 0.21 4.49 8.06 -2.91 -0.02 4.46 15 22 H 0.18 5.66 8.06 -2.91 -0.02 5.64 15 23 H 0.02 0.79 8.14 -2.38 -0.02 0.78 15 24 H 0.04 1.80 5.97 -2.39 -0.01 1.78 15 25 H 0.07 3.81 6.06 -2.39 -0.01 3.80 15 26 H 0.31 14.64 8.98 -89.69 -0.81 13.83 15 27 H 0.35 17.06 7.01 -89.69 -0.63 16.43 15 28 H 0.27 13.52 8.31 -92.70 -0.77 12.75 15 Total: -1.00 -63.32 232.60 2.53 -60.78 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: -0.25 Total: 32.57 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 5.32 Total: -6.53 kcal Atomic # 7 Polarization: -128.84 SS G_CDS: -4.56 Total: -133.40 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -63.32 2.53 -60.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084330275.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.630 kcal (2) G-P(sol) polarization free energy of solvation -63.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds