Wall clock time and date at job start Mon Mar 30 2020 01:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.40089 * 126.03678 * 2 1 4 4 C 1.30832 * 108.20724 * 179.97438 * 3 2 1 5 5 C 1.39874 * 108.20441 * 0.02562 * 4 3 2 6 6 C 1.34948 * 126.04302 * 179.68929 * 2 1 3 7 7 C 1.50704 * 126.12135 * 359.97438 * 6 2 1 8 8 C 1.53005 * 109.47193 * 58.59131 * 7 6 2 9 9 N 1.46899 * 109.46981 * 178.59041 * 7 6 2 10 10 C 1.50692 * 109.47168 * 298.59378 * 7 6 2 11 11 H 1.08001 * 120.00397 * 359.97438 * 10 7 6 12 12 C 1.37882 * 120.00080 * 180.02562 * 10 7 6 13 13 N 1.31513 * 119.99875 * 359.97438 * 12 10 7 14 14 Si 1.86800 * 120.00133 * 179.97438 * 12 10 7 15 15 H 1.48499 * 109.47012 * 89.99858 * 14 12 10 16 16 H 1.48493 * 109.47084 * 209.99429 * 14 12 10 17 17 H 1.48496 * 109.47102 * 330.00139 * 14 12 10 18 18 H 1.09003 * 109.47367 * 95.22276 * 1 2 3 19 19 H 1.09002 * 109.47106 * 215.22389 * 1 2 3 20 20 H 1.08996 * 109.47427 * 335.22360 * 1 2 3 21 21 H 1.07997 * 125.90235 * 180.02562 * 4 3 2 22 22 H 1.07999 * 126.04055 * 179.97438 * 5 4 3 23 23 H 1.09006 * 109.46792 * 53.05678 * 8 7 6 24 24 H 1.08998 * 109.47125 * 173.05622 * 8 7 6 25 25 H 1.08997 * 109.46884 * 293.06201 * 8 7 6 26 26 H 1.00898 * 110.99850 * 59.99956 * 9 7 6 27 27 H 1.00903 * 110.99781 * 183.95649 * 9 7 6 28 28 H 0.96996 * 120.00220 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7322 0.0006 5 6 3.5437 -0.6665 0.0003 6 6 2.2590 -1.0911 0.0059 7 6 1.7974 -2.5257 0.0142 8 6 0.9251 -2.7880 -1.2151 9 7 2.9654 -3.4161 -0.0152 10 6 0.9967 -2.7885 1.2635 11 1 0.8382 -1.9962 1.9801 12 6 0.4672 -4.0409 1.4923 13 7 0.6606 -5.0060 0.6200 14 14 -0.5247 -4.3669 3.0412 15 1 -1.9583 -4.0810 2.7803 16 1 -0.3682 -5.7890 3.4391 17 1 -0.0363 -3.4899 4.1355 18 1 -0.3634 -0.0935 -1.0234 19 1 -0.3633 -0.8395 0.5927 20 1 -0.3634 0.9330 0.4306 21 1 4.4053 1.3711 0.0011 22 1 4.4211 -1.2962 0.0003 23 1 1.4613 -2.4812 -2.1132 24 1 0.6931 -3.8513 -1.2759 25 1 -0.0004 -2.2182 -1.1321 26 1 3.5577 -3.2621 0.7870 27 1 2.6819 -4.3826 -0.0753 28 1 0.2885 -5.8871 0.7811 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084330278.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:22 Heat of formation + Delta-G solvation = 73.095383 kcal Electronic energy + Delta-G solvation = -12704.846698 eV Core-core repulsion = 10564.438092 eV Total energy + Delta-G solvation = -2140.408607 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.34337 -35.65534 -32.38170 -31.66256 -28.49732 -27.36989 -25.92800 -25.39343 -21.42205 -20.12557 -18.44179 -16.78403 -15.75706 -14.66525 -14.48212 -13.80783 -13.48715 -13.01245 -12.77841 -12.35847 -11.99536 -11.65220 -11.48261 -11.15183 -10.97300 -10.51510 -10.41297 -10.05846 -9.88208 -9.64480 -8.77793 -8.34851 -7.56671 -7.25739 -6.20627 -4.39975 2.84563 3.13174 3.22131 3.25993 3.42188 3.75995 4.21878 4.98116 5.39553 5.78379 5.85654 5.91520 6.20737 6.25195 6.51674 6.68178 6.82439 6.85918 7.07792 7.36341 7.54750 7.57725 7.73324 7.94927 8.03158 8.48716 8.64522 8.83867 9.04559 9.34140 10.73880 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.043616 B = 0.013719 C = 0.012468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.816730 B = 2040.476244 C = 2245.236275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.369 5.369 3 N -0.334 5.334 4 C 0.033 3.967 5 C -0.292 4.292 6 C 0.148 3.852 7 C 0.289 3.711 8 C -0.125 4.125 9 N -0.840 5.840 10 C -0.546 4.546 11 H 0.055 0.945 12 C 0.074 3.926 13 N -0.885 5.885 14 Si 0.897 3.103 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.274 1.274 18 H 0.062 0.938 19 H 0.104 0.896 20 H 0.072 0.928 21 H 0.170 0.830 22 H 0.141 0.859 23 H 0.018 0.982 24 H 0.086 0.914 25 H 0.034 0.966 26 H 0.318 0.682 27 H 0.359 0.641 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.337 3.722 -0.532 3.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.150 5.150 3 N -0.156 5.156 4 C -0.152 4.152 5 C -0.321 4.321 6 C 0.019 3.981 7 C 0.195 3.805 8 C -0.183 4.183 9 N -0.371 5.371 10 C -0.586 4.586 11 H 0.073 0.927 12 C -0.130 4.130 13 N -0.524 5.524 14 Si 0.724 3.276 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.199 1.199 18 H 0.081 0.919 19 H 0.123 0.877 20 H 0.091 0.909 21 H 0.187 0.813 22 H 0.159 0.841 23 H 0.037 0.963 24 H 0.105 0.895 25 H 0.053 0.947 26 H 0.128 0.872 27 H 0.176 0.824 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.466 4.910 -1.273 5.093 hybrid contribution -0.426 -1.243 1.789 2.220 sum -0.891 3.667 0.516 3.809 Atomic orbital electron populations 1.21925 0.75287 1.04191 1.02720 1.48181 1.06110 1.03338 1.57409 1.77125 1.01824 1.09010 1.27597 1.23624 0.94886 0.95480 1.01224 1.21095 0.97076 0.93751 1.20173 1.21736 0.90298 0.91554 0.94478 1.16942 0.88012 0.81542 0.93996 1.21755 0.97263 1.04072 0.95234 1.59244 1.20028 1.11553 1.46313 1.21695 1.34427 0.96736 1.05768 0.92669 1.24947 0.95512 0.95901 0.96622 1.69691 1.45154 1.02748 1.34764 0.86514 0.80341 0.77645 0.83108 1.20432 1.20955 1.19907 0.91910 0.87733 0.90917 0.81339 0.84103 0.96304 0.89505 0.94682 0.87234 0.82419 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.84 9.77 59.84 0.58 2.43 15 2 N -0.37 -7.99 4.01 -63.89 -0.26 -8.24 15 3 N -0.33 -7.11 12.58 30.62 0.39 -6.72 15 4 C 0.03 0.64 12.03 -17.37 -0.21 0.43 15 5 C -0.29 -6.19 9.93 -40.01 -0.40 -6.59 15 6 C 0.15 3.39 5.46 -82.26 -0.45 2.94 15 7 C 0.29 6.82 0.68 -133.90 -0.09 6.73 15 8 C -0.12 -2.89 8.17 37.16 0.30 -2.59 15 9 N -0.84 -19.31 8.22 -1.14 -0.01 -19.32 15 10 C -0.55 -13.72 6.58 -34.44 -0.23 -13.95 15 11 H 0.06 1.44 7.38 -52.49 -0.39 1.05 15 12 C 0.07 1.83 5.22 -17.82 -0.09 1.74 15 13 N -0.89 -22.32 9.65 55.43 0.54 -21.78 15 14 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 15 15 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 18 H 0.06 1.05 7.72 -51.93 -0.40 0.65 15 19 H 0.10 2.03 5.91 -51.93 -0.31 1.72 15 20 H 0.07 1.16 8.14 -51.93 -0.42 0.74 15 21 H 0.17 2.57 8.06 -52.49 -0.42 2.14 15 22 H 0.14 2.81 7.60 -52.49 -0.40 2.41 15 23 H 0.02 0.41 8.13 -51.93 -0.42 -0.01 15 24 H 0.09 2.14 6.29 -51.93 -0.33 1.82 15 25 H 0.03 0.76 6.12 -51.93 -0.32 0.44 15 26 H 0.32 7.11 8.51 -39.29 -0.33 6.77 15 27 H 0.36 8.65 6.99 -39.29 -0.27 8.37 15 28 H 0.27 6.50 8.31 -40.82 -0.34 6.16 15 LS Contribution 232.31 15.07 3.50 3.50 Total: -1.00 -27.13 232.31 -4.59 -31.72 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -3.15 Total: 14.91 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -0.58 Total: -8.86 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: 0.65 Total: -56.07 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -27.13 -4.59 -31.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084330278.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.820 kcal (2) G-P(sol) polarization free energy of solvation -27.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds