Wall clock time and date at job start Mon Mar 30 2020 02:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46894 * 109.47515 * 179.97438 * 10 9 7 12 12 C 1.47700 * 111.00419 * 266.35052 * 11 10 9 13 13 C 1.52376 * 87.59606 * 222.18430 * 12 11 10 14 14 C 1.52641 * 121.97347 * 149.99343 * 13 12 11 15 15 C 1.54009 * 86.67672 * 152.07995 * 14 13 12 16 16 C 1.52637 * 121.97901 * 260.46696 * 13 12 11 17 17 C 1.47706 * 111.00273 * 169.99935 * 11 10 9 18 18 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 20 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 21 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 22 22 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 23 23 H 1.08999 * 113.53120 * 336.86772 * 12 11 10 24 24 H 1.09007 * 113.53151 * 107.50126 * 12 11 10 25 25 H 1.08999 * 113.67766 * 266.51568 * 14 13 12 26 26 H 1.08991 * 113.68118 * 37.63381 * 14 13 12 27 27 H 1.09001 * 113.56354 * 220.86416 * 15 14 13 28 28 H 1.08994 * 113.64251 * 90.11758 * 15 14 13 29 29 H 1.09007 * 113.68004 * 322.36914 * 16 13 12 30 30 H 1.08993 * 113.68008 * 93.38008 * 16 13 12 31 31 H 1.08998 * 113.53120 * 252.49189 * 17 11 10 32 32 H 1.08994 * 113.53222 * 23.13387 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 7 5.4903 -2.6368 -0.0001 12 6 6.0197 -2.7245 -1.3762 13 6 7.0498 -3.7154 -0.8482 14 6 7.6243 -4.8270 -1.7224 15 6 8.8845 -4.7465 -0.8407 16 6 8.4799 -3.2960 -0.5183 17 6 6.0196 -3.9949 0.2392 18 1 -0.4850 0.8401 -0.0004 19 1 3.8751 -0.6798 -0.8895 20 1 3.8745 -0.6810 0.8905 21 1 3.6577 -3.1507 0.8897 22 1 3.6584 -3.1504 -0.8902 23 1 5.3177 -3.1631 -2.0854 24 1 6.4563 -1.7923 -1.7348 25 1 7.0893 -5.7727 -1.6358 26 1 7.7937 -4.5273 -2.7565 27 1 9.8152 -4.8247 -1.4027 28 1 8.8560 -5.4094 0.0240 29 1 8.8919 -2.5623 -1.2113 30 1 8.6256 -3.0211 0.5262 31 1 6.4563 -4.1235 1.2296 32 1 5.3176 -4.7874 -0.0197 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086681304.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:00 Heat of formation + Delta-G solvation = 47.892458 kcal Electronic energy + Delta-G solvation = -12214.406846 eV Core-core repulsion = 10176.445701 eV Total energy + Delta-G solvation = -2037.961144 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.68175 -36.37010 -33.16492 -30.86564 -26.90220 -25.77094 -25.76099 -23.46416 -21.27970 -19.99882 -17.87119 -16.79851 -15.63486 -15.31910 -15.06561 -14.22242 -14.07040 -13.10834 -12.73045 -12.64708 -12.35038 -12.08228 -11.77932 -11.35931 -11.22031 -10.85005 -10.38799 -10.28440 -10.02447 -9.88526 -9.75096 -9.48656 -9.17217 -8.50453 -8.34754 -6.02016 -4.00015 3.34792 3.41799 3.49602 4.28020 4.35279 4.49522 4.64421 4.78631 4.89615 5.32939 5.34596 5.42354 5.61998 5.69377 5.70960 5.77191 5.81756 5.87460 5.94911 6.05918 6.14669 6.26890 6.35264 6.43412 6.71552 6.89548 7.22708 7.47201 7.66496 7.86377 8.55539 9.01772 9.60972 11.11405 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.074853 B = 0.007310 C = 0.006965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.974564 B = 3829.304097 C = 4019.187773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.522 4.522 8 H 0.070 0.930 9 C -0.002 4.002 10 C 0.035 3.965 11 N -0.473 5.473 12 C 0.014 3.986 13 C -0.116 4.116 14 C -0.128 4.128 15 C -0.139 4.139 16 C -0.107 4.107 17 C 0.022 3.978 18 H 0.263 0.737 19 H 0.010 0.990 20 H 0.023 0.977 21 H 0.064 0.936 22 H 0.037 0.963 23 H 0.069 0.931 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.183 -8.013 -2.445 18.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.561 4.561 8 H 0.088 0.912 9 C -0.040 4.040 10 C -0.092 4.092 11 N -0.195 5.195 12 C -0.115 4.115 13 C -0.116 4.116 14 C -0.166 4.166 15 C -0.177 4.177 16 C -0.144 4.144 17 C -0.107 4.107 18 H 0.072 0.928 19 H 0.028 0.972 20 H 0.041 0.959 21 H 0.083 0.917 22 H 0.055 0.945 23 H 0.087 0.913 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 16.158 -7.322 -1.981 17.850 hybrid contribution -0.193 0.271 -0.551 0.644 sum 15.965 -7.051 -2.533 17.635 Atomic orbital electron populations 1.69919 1.06320 1.26894 1.51287 1.24995 0.94713 0.99203 0.94462 0.86754 0.80539 0.83415 0.78512 1.20374 1.21415 1.18726 1.21121 0.89535 0.94470 1.50931 0.91207 1.19432 0.96187 0.91584 0.96765 1.22676 0.85630 1.00799 1.00125 1.68958 1.11657 1.22713 1.16148 1.23654 0.96319 0.98931 0.92642 1.22497 0.94227 0.97103 0.97788 1.22712 0.97057 0.98380 0.98417 1.22843 0.97548 0.97450 0.99843 1.22479 0.93676 0.96303 1.01938 1.23445 0.95594 0.93027 0.98629 0.92756 0.97181 0.95869 0.91742 0.94504 0.91320 0.90260 0.91513 0.89955 0.91748 0.90373 0.89972 0.91097 0.90232 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.52 13.96 55.43 0.77 -27.74 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 22.52 27.47 -169.99 -4.67 17.86 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 7 C -0.52 -15.39 9.66 -34.44 -0.33 -15.73 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C 0.00 -0.05 4.37 -27.88 -0.12 -0.17 16 10 C 0.04 0.75 4.75 -3.83 -0.02 0.73 16 11 N -0.47 -8.66 6.32 -244.39 -1.55 -10.21 16 12 C 0.01 0.21 7.53 -6.76 -0.05 0.16 16 13 C -0.12 -1.50 1.31 -155.54 -0.20 -1.70 16 14 C -0.13 -1.34 7.90 -26.39 -0.21 -1.55 16 15 C -0.14 -1.33 8.08 -25.70 -0.21 -1.54 16 16 C -0.11 -1.21 7.90 -26.39 -0.21 -1.41 16 17 C 0.02 0.32 7.50 -6.75 -0.05 0.27 16 18 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 19 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 20 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 21 H 0.06 1.37 8.08 -51.93 -0.42 0.95 16 22 H 0.04 0.77 7.31 -51.93 -0.38 0.39 16 23 H 0.07 1.08 7.42 -51.93 -0.39 0.69 16 24 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 0.95 7.91 -51.93 -0.41 0.53 16 LS Contribution 259.89 15.07 3.92 3.92 Total: -1.00 -31.22 259.89 -8.35 -39.57 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: -5.33 Total: -4.39 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -1.50 Total: -19.01 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: -0.77 Total: -37.95 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.86 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.22 -8.35 -39.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681304.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.467 kcal (2) G-P(sol) polarization free energy of solvation -31.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds