Wall clock time and date at job start Mon Mar 30 2020 02:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99713 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47196 * 120.00210 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46623 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.46626 * 179.97438 * 11 10 9 13 13 C 1.47662 * 111.00150 * 73.68384 * 12 11 10 14 14 C 1.52646 * 87.64877 * 137.99552 * 13 12 11 15 15 C 1.52111 * 129.73355 * 113.71755 * 14 13 12 16 16 C 1.52117 * 129.73195 * 195.53064 * 14 13 12 17 17 C 1.47661 * 110.99545 * 170.00067 * 12 11 10 18 18 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 20 20 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 21 21 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 22 22 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 23 23 H 1.08993 * 109.46955 * 300.00075 * 11 10 9 24 24 H 1.09000 * 109.47050 * 59.99904 * 11 10 9 25 25 H 1.09002 * 113.52052 * 252.69280 * 13 12 11 26 26 H 1.09001 * 113.52200 * 23.29672 * 13 12 11 27 27 H 1.09004 * 117.52517 * 226.39992 * 15 14 13 28 28 H 1.09004 * 117.51758 * 11.55823 * 15 14 13 29 29 H 1.09002 * 117.51956 * 348.44247 * 16 14 13 30 30 H 1.09002 * 117.52611 * 133.60091 * 16 14 13 31 31 H 1.08998 * 113.52667 * 336.69213 * 17 12 11 32 32 H 1.09006 * 113.52177 * 107.24239 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0046 12 7 2.4348 -6.1037 0.0050 13 6 3.0741 -6.2529 1.3276 14 6 2.9033 -7.7616 1.1700 15 6 3.9563 -8.8488 1.0187 16 6 2.9968 -8.8650 2.2130 17 6 1.7470 -7.3878 0.2461 18 1 -0.4851 0.8400 -0.0004 19 1 0.6240 -2.5576 -0.8880 20 1 0.6247 -2.5563 0.8920 21 1 2.8719 -3.6036 0.8927 22 1 2.8719 -3.6052 -0.8873 23 1 0.8539 -5.0438 0.8948 24 1 0.8532 -5.0459 -0.8851 25 1 4.1158 -5.9326 1.3460 26 1 2.4877 -5.8316 2.1442 27 1 3.8021 -9.5943 0.2386 28 1 4.9939 -8.5750 1.2100 29 1 3.4035 -8.6018 3.1895 30 1 2.2117 -9.6211 2.2182 31 1 0.7938 -7.2804 0.7637 32 1 1.6768 -8.0171 -0.6413 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086681665.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:39 Heat of formation + Delta-G solvation = 47.880887 kcal Electronic energy + Delta-G solvation = -11896.756234 eV Core-core repulsion = 9858.794588 eV Total energy + Delta-G solvation = -2037.961646 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.19633 -35.59580 -33.62441 -31.54093 -27.67635 -25.96073 -24.43776 -22.59486 -21.58236 -19.93916 -18.47759 -16.31529 -15.67276 -15.46216 -15.09807 -14.42972 -14.05460 -13.44749 -12.75466 -12.38510 -12.17367 -11.60168 -11.55035 -11.26916 -10.82701 -10.66082 -10.55438 -10.31584 -10.23961 -10.05107 -9.62405 -9.28124 -9.02600 -8.55945 -8.31581 -5.96961 -3.99076 3.35735 3.39588 3.42590 3.61674 4.21722 4.38474 4.49727 4.63083 4.87453 5.36450 5.38772 5.48688 5.52662 5.57270 5.67263 5.74125 5.75614 5.80850 5.93771 6.02764 6.07325 6.30594 6.53145 6.74867 6.87277 7.18594 7.39981 7.70821 7.85880 8.03304 8.46819 9.07784 9.64722 11.14526 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.086665 B = 0.005876 C = 0.005694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 323.004002 B = 4763.695077 C = 4916.503460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.103 4.103 11 C 0.020 3.980 12 N -0.468 5.468 13 C 0.042 3.958 14 C -0.170 4.170 15 C -0.142 4.142 16 C -0.168 4.168 17 C 0.037 3.963 18 H 0.260 0.740 19 H 0.016 0.984 20 H 0.013 0.987 21 H 0.045 0.955 22 H 0.055 0.945 23 H 0.037 0.963 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.456 -15.365 3.109 16.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.141 4.141 11 C -0.108 4.108 12 N -0.190 5.190 13 C -0.087 4.087 14 C -0.170 4.170 15 C -0.178 4.178 16 C -0.205 4.205 17 C -0.092 4.092 18 H 0.070 0.930 19 H 0.034 0.966 20 H 0.032 0.968 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.055 0.945 24 H 0.091 0.909 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.088 0.912 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.676 -15.092 2.478 15.993 hybrid contribution -0.206 0.980 0.705 1.225 sum 4.470 -14.111 3.184 15.141 Atomic orbital electron populations 1.69956 1.06066 1.26660 1.50989 1.25026 0.94846 0.99238 0.95366 0.86650 0.79573 0.83108 0.78629 1.20215 1.21294 1.20270 1.21222 0.93020 0.91067 1.50435 0.92743 1.19078 0.94014 0.91409 0.97081 1.21572 0.99084 0.92665 1.00755 1.22845 0.94702 0.92556 1.00716 1.68985 1.21120 1.01539 1.27335 1.23264 1.01485 0.91455 0.92473 1.22115 1.00652 0.92248 1.02016 1.22640 0.95455 0.99654 1.00098 1.22772 1.02623 1.00905 0.94225 1.23293 0.94994 0.93204 0.97727 0.92990 0.96575 0.96843 0.93610 0.92634 0.94518 0.90940 0.89936 0.90894 0.88652 0.88562 0.88662 0.88755 0.91193 0.90105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.29 55.43 0.74 -26.74 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.10 -2.24 5.26 -26.73 -0.14 -2.38 16 11 C 0.02 0.36 4.82 -3.82 -0.02 0.35 16 12 N -0.47 -7.64 6.41 -243.94 -1.56 -9.21 16 13 C 0.04 0.61 7.01 -6.78 -0.05 0.56 16 14 C -0.17 -2.08 3.38 -155.77 -0.53 -2.61 16 15 C -0.14 -1.45 10.53 -27.08 -0.29 -1.73 16 16 C -0.17 -1.65 10.53 -27.08 -0.29 -1.93 16 17 C 0.04 0.49 7.73 -6.77 -0.05 0.44 16 18 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 19 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 20 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 21 H 0.05 0.98 7.65 -51.93 -0.40 0.59 16 22 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 23 H 0.04 0.66 7.58 -51.93 -0.39 0.27 16 24 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 25 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.07 1.06 7.71 -51.93 -0.40 0.66 16 27 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.90 7.77 -51.93 -0.40 0.49 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 267.55 15.07 4.03 4.03 Total: -1.00 -30.58 267.55 -9.09 -39.67 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -5.36 Total: -4.02 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: -1.91 Total: -20.78 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: -0.83 Total: -35.94 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.58 -9.09 -39.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681665.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.549 kcal (2) G-P(sol) polarization free energy of solvation -30.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds