Wall clock time and date at job start Mon Mar 30 2020 02:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47344 * 2 1 4 4 N 1.46501 * 109.47498 * 179.97438 * 3 2 1 5 5 N 1.39845 * 125.70023 * 269.97490 * 4 3 2 6 6 C 1.30266 * 109.53793 * 180.02562 * 5 4 3 7 7 C 1.41806 * 108.25434 * 359.97438 * 6 5 4 8 8 C 1.41189 * 126.62939 * 180.26640 * 7 6 5 9 9 H 1.08004 * 119.99765 * 161.02181 * 8 7 6 10 10 C 1.39554 * 120.00521 * 341.02468 * 8 7 6 11 11 N 1.31193 * 120.00115 * 164.24235 * 10 8 7 12 12 Si 1.86801 * 119.99632 * 344.23720 * 10 8 7 13 13 H 1.48504 * 109.46927 * 91.45953 * 12 10 8 14 14 H 1.48500 * 109.47122 * 211.45649 * 12 10 8 15 15 H 1.48493 * 109.47400 * 331.46131 * 12 10 8 16 16 C 1.35152 * 125.69948 * 90.00049 * 4 3 2 17 17 N 1.37734 * 126.56105 * 359.97438 * 16 4 3 18 18 H 1.08999 * 109.47226 * 299.99927 * 1 2 3 19 19 H 1.08994 * 109.46798 * 59.99965 * 1 2 3 20 20 H 1.08997 * 109.46867 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47684 * 239.99799 * 2 1 3 22 22 H 1.08998 * 109.47367 * 119.99592 * 2 1 3 23 23 H 1.09002 * 109.47404 * 59.99867 * 3 2 1 24 24 H 1.09002 * 109.47044 * 300.00067 * 3 2 1 25 25 H 1.08004 * 125.87108 * 180.02562 * 6 5 4 26 26 H 0.97000 * 119.99540 * 179.97438 * 11 10 8 27 27 H 0.97000 * 119.99427 * 179.97438 * 17 16 4 28 28 H 0.96997 * 120.00555 * 359.97039 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 7 4.3206 1.4432 1.1366 6 6 5.5720 1.4436 0.7745 7 6 5.6243 1.4425 -0.6426 8 6 6.7877 1.4373 -1.4425 9 1 6.7302 1.1327 -2.4771 10 6 8.0119 1.8255 -0.8965 11 7 9.1295 1.5356 -1.5195 12 14 8.0591 2.7580 0.7214 13 1 8.1810 1.7943 1.8448 14 1 9.2254 3.6772 0.7291 15 1 6.8086 3.5436 0.8767 16 6 4.2942 1.4424 -1.0966 17 7 3.8751 1.4417 -2.4086 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0276 0.0005 21 1 1.8934 -0.5138 -0.8899 22 1 1.8934 -0.5138 0.8900 23 1 1.6767 1.9564 0.8900 24 1 1.6767 1.9563 -0.8900 25 1 6.4232 1.4437 1.4393 26 1 9.9803 1.8058 -1.1400 27 1 4.5278 1.4420 -3.1262 28 1 2.9273 1.4408 -2.6151 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087579924.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:21 Heat of formation + Delta-G solvation = 67.244251 kcal Electronic energy + Delta-G solvation = -12189.614899 eV Core-core repulsion = 10048.952568 eV Total energy + Delta-G solvation = -2140.662331 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.67800 -35.02502 -33.44598 -32.90972 -30.60377 -28.13529 -26.04247 -23.68625 -21.69192 -20.32732 -18.96806 -17.07153 -16.49020 -15.27119 -14.83615 -14.40532 -14.22100 -13.75393 -13.04922 -12.70336 -12.17537 -11.98991 -11.84975 -11.26650 -10.85488 -10.72249 -10.57692 -10.46637 -9.99895 -9.61089 -9.00118 -8.86958 -7.69947 -6.66640 -6.35635 -3.69604 3.12294 3.30214 3.41487 3.51716 3.53960 4.13145 4.34970 4.81271 5.00789 5.08105 5.29498 5.43263 5.56767 5.65227 5.79335 5.96930 6.02849 6.22278 6.36331 6.80898 6.93569 7.46542 7.78657 7.89764 8.52110 8.62597 8.74529 9.08372 9.18351 9.41445 10.73634 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.061796 B = 0.010658 C = 0.009540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.991701 B = 2626.579167 C = 2934.191867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.147 3.853 4 N -0.397 5.397 5 N -0.337 5.337 6 C -0.005 4.005 7 C -0.093 4.093 8 C -0.432 4.432 9 H 0.075 0.925 10 C 0.076 3.924 11 N -0.862 5.862 12 Si 0.896 3.104 13 H -0.276 1.276 14 H -0.297 1.297 15 H -0.254 1.254 16 C 0.231 3.769 17 N -0.855 5.855 18 H 0.055 0.945 19 H 0.054 0.946 20 H 0.056 0.944 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.158 0.842 26 H 0.272 0.728 27 H 0.410 0.590 28 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.614 -0.310 0.920 12.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.181 4.181 3 C 0.024 3.976 4 N -0.188 5.188 5 N -0.162 5.162 6 C -0.187 4.187 7 C -0.108 4.108 8 C -0.467 4.467 9 H 0.094 0.906 10 C -0.133 4.133 11 N -0.494 5.494 12 Si 0.726 3.274 13 H -0.203 1.203 14 H -0.225 1.225 15 H -0.178 1.178 16 C 0.009 3.991 17 N -0.406 5.406 18 H 0.074 0.926 19 H 0.073 0.927 20 H 0.075 0.925 21 H 0.083 0.917 22 H 0.088 0.912 23 H 0.099 0.901 24 H 0.090 0.910 25 H 0.175 0.825 26 H 0.082 0.918 27 H 0.240 0.760 28 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -13.198 -0.289 1.970 13.347 hybrid contribution 0.603 0.380 -0.317 0.780 sum -12.595 0.091 1.654 12.703 Atomic orbital electron populations 1.21699 0.95298 1.01795 1.01726 1.21971 0.95531 0.97335 1.03231 1.21253 0.77139 0.96777 1.02478 1.47625 1.03999 1.64179 1.03020 1.76565 1.02237 1.31117 1.06279 1.23487 0.93968 1.05438 0.95779 1.17543 0.90394 1.11861 0.90983 1.18127 0.89263 1.40985 0.98308 0.90645 1.25582 0.94988 0.94874 0.97851 1.69813 0.98169 1.41330 1.40113 0.86683 0.77633 0.80479 0.82635 1.20317 1.22460 1.17799 1.18052 0.89944 1.10231 0.80844 1.40651 1.08225 1.88989 1.02729 0.92595 0.92732 0.92533 0.91683 0.91180 0.90056 0.90954 0.82535 0.91843 0.75967 0.79494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.16 0.37 -1.10 15 2 C -0.14 -1.93 6.26 -26.73 -0.17 -2.09 15 3 C 0.15 2.28 6.22 -4.04 -0.03 2.26 15 4 N -0.40 -8.48 3.60 -59.68 -0.21 -8.70 15 5 N -0.34 -8.18 12.44 30.94 0.39 -7.80 15 6 C 0.00 -0.12 9.25 -16.85 -0.16 -0.28 15 7 C -0.09 -2.47 5.50 -106.54 -0.59 -3.05 15 8 C -0.43 -12.29 9.70 -37.97 -0.37 -12.65 15 9 H 0.08 2.21 7.78 -52.48 -0.41 1.80 15 10 C 0.08 2.17 5.50 -17.33 -0.10 2.07 15 11 N -0.86 -25.18 13.95 55.53 0.77 -24.41 15 12 Si 0.90 22.19 24.51 -169.99 -4.17 18.03 15 13 H -0.28 -6.59 6.68 56.52 0.38 -6.21 15 14 H -0.30 -7.20 7.11 56.52 0.40 -6.79 15 15 H -0.25 -6.42 6.54 56.52 0.37 -6.05 15 16 C 0.23 5.28 8.06 -153.30 -1.23 4.05 15 17 N -0.86 -15.55 9.03 31.65 0.29 -15.26 15 18 H 0.05 0.52 8.14 -51.93 -0.42 0.10 15 19 H 0.05 0.48 8.14 -51.93 -0.42 0.06 15 20 H 0.06 0.52 8.14 -51.93 -0.42 0.09 15 21 H 0.06 0.93 8.14 -51.93 -0.42 0.51 15 22 H 0.07 1.07 8.14 -51.93 -0.42 0.64 15 23 H 0.08 1.20 8.14 -51.93 -0.42 0.78 15 24 H 0.07 0.96 7.47 -51.93 -0.39 0.57 15 25 H 0.16 3.97 4.24 -52.48 -0.22 3.74 15 26 H 0.27 7.36 8.30 -40.82 -0.34 7.02 15 27 H 0.41 7.37 8.47 -40.82 -0.35 7.02 15 28 H 0.38 5.49 8.06 -40.82 -0.33 5.16 15 LS Contribution 237.43 15.07 3.58 3.58 Total: -1.00 -31.88 237.43 -5.04 -36.92 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -3.42 Total: 8.45 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -2.27 Total: -10.81 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 1.23 Total: -56.17 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.17 Total: 18.03 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -31.88 -5.04 -36.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087579924.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.166 kcal (2) G-P(sol) polarization free energy of solvation -31.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds