Wall clock time and date at job start Mon Mar 30 2020 02:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47344 * 2 1 4 4 N 1.46501 * 109.47498 * 179.97438 * 3 2 1 5 5 N 1.39845 * 125.70023 * 269.97490 * 4 3 2 6 6 C 1.30266 * 109.53793 * 180.02562 * 5 4 3 7 7 C 1.41806 * 108.25434 * 359.97438 * 6 5 4 8 8 C 1.41189 * 126.62939 * 180.26640 * 7 6 5 9 9 H 1.08004 * 119.99765 * 161.02181 * 8 7 6 10 10 C 1.39554 * 120.00521 * 341.02468 * 8 7 6 11 11 N 1.31193 * 120.00115 * 164.24235 * 10 8 7 12 12 Si 1.86801 * 119.99632 * 344.23720 * 10 8 7 13 13 H 1.48504 * 109.46927 * 91.45953 * 12 10 8 14 14 H 1.48500 * 109.47122 * 211.45649 * 12 10 8 15 15 H 1.48493 * 109.47400 * 331.46131 * 12 10 8 16 16 C 1.35152 * 125.69948 * 90.00049 * 4 3 2 17 17 N 1.37734 * 126.56105 * 359.97438 * 16 4 3 18 18 H 1.08999 * 109.47226 * 299.99927 * 1 2 3 19 19 H 1.08994 * 109.46798 * 59.99965 * 1 2 3 20 20 H 1.08997 * 109.46867 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47684 * 239.99799 * 2 1 3 22 22 H 1.08998 * 109.47367 * 119.99592 * 2 1 3 23 23 H 1.09002 * 109.47404 * 59.99867 * 3 2 1 24 24 H 1.09002 * 109.47044 * 300.00067 * 3 2 1 25 25 H 1.08004 * 125.87108 * 180.02562 * 6 5 4 26 26 H 0.97000 * 119.99540 * 179.97438 * 11 10 8 27 27 H 0.97000 * 119.99427 * 179.97438 * 17 16 4 28 28 H 0.96997 * 120.00555 * 359.97039 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 7 4.3206 1.4432 1.1366 6 6 5.5720 1.4436 0.7745 7 6 5.6243 1.4425 -0.6426 8 6 6.7877 1.4373 -1.4425 9 1 6.7302 1.1327 -2.4771 10 6 8.0119 1.8255 -0.8965 11 7 9.1295 1.5356 -1.5195 12 14 8.0591 2.7580 0.7214 13 1 8.1810 1.7943 1.8448 14 1 9.2254 3.6772 0.7291 15 1 6.8086 3.5436 0.8767 16 6 4.2942 1.4424 -1.0966 17 7 3.8751 1.4417 -2.4086 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0276 0.0005 21 1 1.8934 -0.5138 -0.8899 22 1 1.8934 -0.5138 0.8900 23 1 1.6767 1.9564 0.8900 24 1 1.6767 1.9563 -0.8900 25 1 6.4232 1.4437 1.4393 26 1 9.9803 1.8058 -1.1400 27 1 4.5278 1.4420 -3.1262 28 1 2.9273 1.4408 -2.6151 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087579924.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:21 Heat of formation + Delta-G solvation = 44.177780 kcal Electronic energy + Delta-G solvation = -12190.615136 eV Core-core repulsion = 10048.952568 eV Total energy + Delta-G solvation = -2141.662568 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.50645 -36.37863 -35.21704 -34.78897 -32.21066 -29.99259 -27.50232 -25.50753 -23.00302 -22.07699 -20.73212 -18.99412 -18.21602 -17.03194 -16.28968 -16.02211 -15.76581 -15.37197 -14.98098 -14.00547 -13.93620 -13.31772 -13.11813 -12.73973 -12.56773 -12.41290 -12.21169 -11.86732 -11.70569 -11.45910 -10.98537 -10.90530 -9.50428 -8.54876 -8.45676 -5.79589 1.23692 1.33279 1.53443 1.54957 1.86478 2.11324 2.33336 3.29043 3.44956 3.79652 3.99275 4.14704 4.32840 4.46297 4.57932 4.88237 4.96343 5.01601 5.12833 5.21051 5.38109 5.55056 5.88549 6.08832 6.45606 6.84790 6.86268 7.11316 7.29254 7.51032 8.67699 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.061796 B = 0.010658 C = 0.009540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.991701 B = 2626.579167 C = 2934.191867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.134 4.134 3 C 0.132 3.868 4 N -0.388 5.388 5 N -0.350 5.350 6 C -0.019 4.019 7 C -0.148 4.148 8 C -0.442 4.442 9 H 0.051 0.949 10 C 0.029 3.971 11 N -0.907 5.907 12 Si 0.954 3.046 13 H -0.265 1.265 14 H -0.290 1.290 15 H -0.262 1.262 16 C 0.265 3.735 17 N -0.835 5.835 18 H 0.064 0.936 19 H 0.072 0.928 20 H 0.065 0.935 21 H 0.057 0.943 22 H 0.048 0.952 23 H 0.094 0.906 24 H 0.104 0.896 25 H 0.155 0.845 26 H 0.276 0.724 27 H 0.413 0.587 28 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.356 0.036 1.169 15.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.173 4.173 3 C 0.012 3.988 4 N -0.180 5.180 5 N -0.177 5.177 6 C -0.200 4.200 7 C -0.163 4.163 8 C -0.478 4.478 9 H 0.069 0.931 10 C -0.176 4.176 11 N -0.542 5.542 12 Si 0.782 3.218 13 H -0.192 1.192 14 H -0.218 1.218 15 H -0.187 1.187 16 C 0.038 3.962 17 N -0.387 5.387 18 H 0.083 0.917 19 H 0.091 0.909 20 H 0.084 0.916 21 H 0.075 0.925 22 H 0.067 0.933 23 H 0.112 0.888 24 H 0.122 0.878 25 H 0.172 0.828 26 H 0.085 0.915 27 H 0.244 0.756 28 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -16.002 0.050 2.217 16.155 hybrid contribution 1.161 0.226 -0.493 1.282 sum -14.841 0.276 1.724 14.943 Atomic orbital electron populations 1.21654 0.92040 1.02929 1.03087 1.21881 0.98191 0.95367 1.01845 1.21844 0.73519 0.98758 1.04717 1.48098 1.06002 1.62159 1.01738 1.76507 1.01847 1.31841 1.07463 1.23478 0.94676 1.06261 0.95544 1.17641 0.91387 1.15731 0.91548 1.18170 0.90637 1.41473 0.97561 0.93129 1.26216 0.94644 0.95804 1.00896 1.69879 0.98713 1.43579 1.42029 0.85760 0.77097 0.79377 0.79595 1.19168 1.21761 1.18695 1.18222 0.89502 1.05774 0.82670 1.40668 1.09915 1.87168 1.00983 0.91721 0.90905 0.91601 0.92468 0.93271 0.88793 0.87801 0.82785 0.91505 0.75561 0.76751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.91 71.98 0.71 -1.47 15 2 C -0.13 -3.20 6.26 30.59 0.19 -3.01 15 3 C 0.13 3.60 6.22 86.38 0.54 4.14 15 4 N -0.39 -15.65 3.60 -342.73 -1.23 -16.88 15 5 N -0.35 -16.55 12.44 -56.01 -0.70 -17.24 15 6 C -0.02 -0.99 9.25 85.81 0.79 -0.20 15 7 C -0.15 -7.81 5.50 -21.11 -0.12 -7.93 15 8 C -0.44 -25.76 9.70 23.31 0.23 -25.53 15 9 H 0.05 3.07 7.78 -2.91 -0.02 3.05 15 10 C 0.03 1.67 5.50 85.11 0.47 2.14 15 11 N -0.91 -54.57 13.95 21.77 0.30 -54.27 15 12 Si 0.95 46.72 24.51 68.60 1.68 48.40 15 13 H -0.27 -12.33 6.68 99.48 0.66 -11.67 15 14 H -0.29 -13.66 7.11 99.48 0.71 -12.95 15 15 H -0.26 -13.05 6.54 99.48 0.65 -12.40 15 16 C 0.27 11.60 8.06 133.00 1.07 12.67 15 17 N -0.83 -28.06 9.03 -53.77 -0.49 -28.54 15 18 H 0.06 0.93 8.14 -2.39 -0.02 0.91 15 19 H 0.07 0.91 8.14 -2.39 -0.02 0.89 15 20 H 0.06 0.95 8.14 -2.39 -0.02 0.93 15 21 H 0.06 1.46 8.14 -2.39 -0.02 1.44 15 22 H 0.05 1.39 8.14 -2.39 -0.02 1.37 15 23 H 0.09 2.40 8.14 -2.39 -0.02 2.38 15 24 H 0.10 2.22 7.47 -2.39 -0.02 2.20 15 25 H 0.16 7.79 4.24 -2.91 -0.01 7.78 15 26 H 0.28 15.34 8.30 -92.71 -0.77 14.57 15 27 H 0.41 14.09 8.47 -92.71 -0.78 13.30 15 28 H 0.40 9.96 8.06 -92.71 -0.75 9.21 15 Total: -1.00 -69.71 237.43 3.01 -66.71 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -0.45 Total: 21.01 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: 3.89 Total: -19.19 kcal Atomic # 7 Polarization: -114.82 SS G_CDS: -2.11 Total: -116.93 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.68 Total: 48.40 kcal Total: -69.71 3.01 -66.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087579924.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.887 kcal (2) G-P(sol) polarization free energy of solvation -69.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds