Wall clock time and date at job start Mon Mar 30 2020 02:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34944 * 126.04064 * 2 1 4 4 C 1.35314 * 107.74768 * 180.14747 * 3 2 1 5 5 C 1.50706 * 126.03683 * 179.87546 * 4 3 2 6 6 C 1.53000 * 109.46735 * 269.70716 * 5 4 3 7 7 N 1.46499 * 109.46840 * 180.02562 * 6 5 4 8 8 C 1.36936 * 120.00002 * 180.02562 * 7 6 5 9 9 H 1.08004 * 120.00140 * 0.02562 * 8 7 6 10 10 C 1.38811 * 120.00367 * 180.02562 * 8 7 6 11 11 N 1.31622 * 120.00562 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 119.99699 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47093 * 90.00457 * 12 10 8 14 14 H 1.48504 * 109.47189 * 210.00360 * 12 10 8 15 15 H 1.48500 * 109.47392 * 329.99935 * 12 10 8 16 16 C 1.39868 * 107.92023 * 359.60782 * 4 3 2 17 17 N 1.30834 * 108.20119 * 0.23908 * 16 4 3 18 18 H 1.08995 * 109.47022 * 270.26484 * 1 2 3 19 19 H 1.09000 * 109.46865 * 30.26669 * 1 2 3 20 20 H 1.08999 * 109.46712 * 150.26202 * 1 2 3 21 21 H 1.08000 * 126.12322 * 359.97438 * 3 2 1 22 22 H 1.09001 * 109.46797 * 149.71064 * 5 4 3 23 23 H 1.08992 * 109.47518 * 29.71061 * 5 4 3 24 24 H 1.09002 * 109.47398 * 300.00410 * 6 5 4 25 25 H 1.09001 * 109.47194 * 60.00591 * 6 5 4 26 26 H 0.97000 * 120.00420 * 0.02562 * 7 6 5 27 27 H 0.96993 * 120.00222 * 179.97438 * 11 10 8 28 28 H 1.07996 * 125.89872 * 180.27032 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 -0.0033 5 6 4.7680 1.5452 -0.0072 6 6 5.1826 1.8358 -1.4510 7 7 6.3731 2.6896 -1.4548 8 6 6.9293 3.0836 -2.6424 9 1 6.4901 2.7652 -3.5764 10 6 8.0576 3.8921 -2.6461 11 7 8.5920 4.2712 -3.7877 12 14 8.8169 4.4433 -1.0308 13 1 9.8336 3.4513 -0.5978 14 1 9.4638 5.7673 -1.2142 15 1 7.7569 4.5494 0.0038 16 6 3.5347 -0.7322 0.0037 17 7 2.2892 -1.1328 0.0058 18 1 -0.3633 0.0048 1.0276 19 1 -0.3633 0.8876 -0.5180 20 1 -0.3633 -0.8923 -0.5098 21 1 1.9282 2.1193 -0.0004 22 1 5.5821 1.0364 0.5092 23 1 4.5442 2.4824 0.5022 24 1 5.4064 0.8985 -1.9604 25 1 4.3686 2.3446 -1.9674 26 1 6.7674 2.9758 -0.6160 27 1 9.3802 4.8365 -3.7902 28 1 4.4054 -1.3711 0.0073 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087766541.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:05 Heat of formation + Delta-G solvation = 88.563504 kcal Electronic energy + Delta-G solvation = -11587.821721 eV Core-core repulsion = 9448.083862 eV Total energy + Delta-G solvation = -2139.737859 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.06990 -35.46283 -33.43324 -32.06912 -30.58067 -28.31945 -26.17421 -23.39118 -21.28640 -20.99356 -19.97344 -17.54197 -16.59787 -15.42820 -14.60311 -14.40244 -13.98319 -13.84406 -13.22463 -12.79500 -12.74796 -12.56068 -12.19310 -11.32687 -11.13659 -10.88322 -10.68646 -10.30675 -10.09659 -9.54110 -9.34052 -8.82403 -8.19063 -7.15872 -5.71127 -3.06023 1.96165 2.57221 2.94026 3.42062 3.45000 3.49441 4.50624 4.64602 4.92648 4.99018 5.15484 5.23331 5.37665 5.54069 5.63451 5.79746 6.00580 6.09412 6.23788 6.27001 6.76391 6.87385 6.92479 7.08495 7.77290 8.06735 8.48316 9.28259 10.00659 10.21232 11.47589 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.077358 B = 0.006599 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.864879 B = 4242.218887 C = 4319.278095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.384 5.384 3 C 0.051 3.949 4 C -0.218 4.218 5 C -0.053 4.053 6 C 0.163 3.837 7 N -0.759 5.759 8 C -0.241 4.241 9 H 0.089 0.911 10 C 0.001 3.999 11 N -0.937 5.937 12 Si 0.886 3.114 13 H -0.284 1.284 14 H -0.292 1.292 15 H -0.277 1.277 16 C 0.054 3.946 17 N -0.305 5.305 18 H 0.070 0.930 19 H 0.085 0.915 20 H 0.086 0.914 21 H 0.172 0.828 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.027 0.973 25 H 0.024 0.976 26 H 0.360 0.640 27 H 0.259 0.741 28 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.630 -6.796 10.034 18.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.167 5.167 3 C -0.094 4.094 4 C -0.230 4.230 5 C -0.092 4.092 6 C 0.036 3.964 7 N -0.404 5.404 8 C -0.371 4.371 9 H 0.107 0.893 10 C -0.194 4.194 11 N -0.585 5.585 12 Si 0.717 3.283 13 H -0.211 1.211 14 H -0.218 1.218 15 H -0.203 1.203 16 C -0.132 4.132 17 N -0.127 5.127 18 H 0.089 0.911 19 H 0.104 0.896 20 H 0.104 0.896 21 H 0.190 0.810 22 H 0.088 0.912 23 H 0.084 0.916 24 H 0.045 0.955 25 H 0.042 0.958 26 H 0.193 0.807 27 H 0.069 0.931 28 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -15.565 -7.775 9.784 19.962 hybrid contribution 1.110 1.223 1.001 1.931 sum -14.455 -6.553 10.785 19.189 Atomic orbital electron populations 1.21780 0.74648 1.04304 1.02958 1.48392 1.06382 1.03977 1.57906 1.22343 0.90953 0.93230 1.02852 1.20120 0.94574 0.93966 1.14330 1.20117 0.93187 0.97394 0.98551 1.20617 0.89034 0.93739 0.93014 1.42757 1.31852 1.60585 1.05253 1.19088 1.07475 1.24682 0.85886 0.89302 1.24687 0.98202 1.00171 0.96373 1.69708 1.24249 1.40729 1.23848 0.86512 0.79295 0.78132 0.84406 1.21076 1.21821 1.20268 1.23838 0.95018 0.94828 0.99498 1.77286 1.01825 1.08372 1.25200 0.91134 0.89621 0.89551 0.81038 0.91228 0.91591 0.95520 0.95825 0.80725 0.93131 0.80044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.81 11.47 59.85 0.69 1.49 15 2 N -0.38 -4.84 4.01 -68.16 -0.27 -5.12 15 3 C 0.05 0.66 11.40 -17.23 -0.20 0.47 15 4 C -0.22 -3.19 5.35 -105.05 -0.56 -3.75 15 5 C -0.05 -0.85 5.81 -27.88 -0.16 -1.01 15 6 C 0.16 3.29 6.24 -4.04 -0.03 3.27 15 7 N -0.76 -18.65 5.41 -59.91 -0.32 -18.98 15 8 C -0.24 -7.06 10.47 -15.06 -0.16 -7.21 15 9 H 0.09 2.78 8.06 -52.48 -0.42 2.36 15 10 C 0.00 0.03 5.50 -17.43 -0.10 -0.07 15 11 N -0.94 -30.03 13.97 55.49 0.78 -29.25 15 12 Si 0.89 22.43 27.73 -169.99 -4.71 17.71 15 13 H -0.28 -7.12 7.11 56.52 0.40 -6.72 15 14 H -0.29 -7.45 7.11 56.52 0.40 -7.05 15 15 H -0.28 -6.54 6.52 56.52 0.37 -6.17 15 16 C 0.05 0.78 11.96 -17.37 -0.21 0.57 15 17 N -0.31 -4.55 12.58 30.62 0.39 -4.16 15 18 H 0.07 0.44 8.14 -51.93 -0.42 0.02 15 19 H 0.09 0.47 8.14 -51.93 -0.42 0.05 15 20 H 0.09 0.62 8.14 -51.93 -0.42 0.19 15 21 H 0.17 1.72 8.06 -52.49 -0.42 1.30 15 22 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 23 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 24 H 0.03 0.56 8.14 -51.93 -0.42 0.14 15 25 H 0.02 0.49 8.14 -51.93 -0.42 0.07 15 26 H 0.36 8.51 5.53 -40.82 -0.23 8.29 15 27 H 0.26 7.86 8.31 -40.82 -0.34 7.52 15 28 H 0.18 2.20 8.06 -52.49 -0.42 1.78 15 LS Contribution 247.66 15.07 3.73 3.73 Total: -1.00 -34.57 247.66 -4.76 -39.33 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -3.62 Total: 2.98 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -0.72 Total: -6.25 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 0.56 Total: -57.51 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.71 Total: 17.71 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -34.57 -4.76 -39.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087766541.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.894 kcal (2) G-P(sol) polarization free energy of solvation -34.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds