Wall clock time and date at job start Mon Mar 30 2020 02:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34944 * 126.04064 * 2 1 4 4 C 1.35314 * 107.74768 * 180.14747 * 3 2 1 5 5 C 1.50706 * 126.03683 * 179.87546 * 4 3 2 6 6 C 1.53000 * 109.46735 * 269.70716 * 5 4 3 7 7 N 1.46499 * 109.46840 * 180.02562 * 6 5 4 8 8 C 1.36936 * 120.00002 * 180.02562 * 7 6 5 9 9 H 1.08004 * 120.00140 * 0.02562 * 8 7 6 10 10 C 1.38811 * 120.00367 * 180.02562 * 8 7 6 11 11 N 1.31622 * 120.00562 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 119.99699 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47093 * 90.00457 * 12 10 8 14 14 H 1.48504 * 109.47189 * 210.00360 * 12 10 8 15 15 H 1.48500 * 109.47392 * 329.99935 * 12 10 8 16 16 C 1.39868 * 107.92023 * 359.60782 * 4 3 2 17 17 N 1.30834 * 108.20119 * 0.23908 * 16 4 3 18 18 H 1.08995 * 109.47022 * 270.26484 * 1 2 3 19 19 H 1.09000 * 109.46865 * 30.26669 * 1 2 3 20 20 H 1.08999 * 109.46712 * 150.26202 * 1 2 3 21 21 H 1.08000 * 126.12322 * 359.97438 * 3 2 1 22 22 H 1.09001 * 109.46797 * 149.71064 * 5 4 3 23 23 H 1.08992 * 109.47518 * 29.71061 * 5 4 3 24 24 H 1.09002 * 109.47398 * 300.00410 * 6 5 4 25 25 H 1.09001 * 109.47194 * 60.00591 * 6 5 4 26 26 H 0.97000 * 120.00420 * 0.02562 * 7 6 5 27 27 H 0.96993 * 120.00222 * 179.97438 * 11 10 8 28 28 H 1.07996 * 125.89872 * 180.27032 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 -0.0033 5 6 4.7680 1.5452 -0.0072 6 6 5.1826 1.8358 -1.4510 7 7 6.3731 2.6896 -1.4548 8 6 6.9293 3.0836 -2.6424 9 1 6.4901 2.7652 -3.5764 10 6 8.0576 3.8921 -2.6461 11 7 8.5920 4.2712 -3.7877 12 14 8.8169 4.4433 -1.0308 13 1 9.8336 3.4513 -0.5978 14 1 9.4638 5.7673 -1.2142 15 1 7.7569 4.5494 0.0038 16 6 3.5347 -0.7322 0.0037 17 7 2.2892 -1.1328 0.0058 18 1 -0.3633 0.0048 1.0276 19 1 -0.3633 0.8876 -0.5180 20 1 -0.3633 -0.8923 -0.5098 21 1 1.9282 2.1193 -0.0004 22 1 5.5821 1.0364 0.5092 23 1 4.5442 2.4824 0.5022 24 1 5.4064 0.8985 -1.9604 25 1 4.3686 2.3446 -1.9674 26 1 6.7674 2.9758 -0.6160 27 1 9.3802 4.8365 -3.7902 28 1 4.4054 -1.3711 0.0073 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087766541.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:05 Heat of formation + Delta-G solvation = 63.887208 kcal Electronic energy + Delta-G solvation = -11588.891765 eV Core-core repulsion = 9448.083862 eV Total energy + Delta-G solvation = -2140.807903 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.07112 -37.20933 -34.73476 -33.65172 -32.23336 -29.53432 -27.33152 -25.11866 -23.05750 -21.95869 -21.11259 -19.61485 -17.60696 -16.60952 -16.29520 -15.68228 -15.58274 -15.19170 -14.80792 -14.23408 -13.79516 -13.57675 -13.43306 -12.95805 -12.79721 -12.54779 -12.21828 -11.99447 -11.79052 -11.45624 -10.93810 -10.32036 -9.27721 -9.25037 -8.00994 -5.35096 0.97733 1.41439 1.46053 1.53535 1.74542 1.85583 2.51802 3.30299 3.61279 3.83934 4.05125 4.33274 4.41905 4.46945 4.56301 4.63937 4.71064 4.88439 4.92120 5.02412 5.34745 5.48836 5.71984 5.78616 6.18952 6.23261 6.75791 7.10280 7.86119 8.07676 9.20821 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.077358 B = 0.006599 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.864879 B = 4242.218887 C = 4319.278095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.383 5.383 3 C 0.061 3.939 4 C -0.245 4.245 5 C -0.035 4.035 6 C 0.162 3.838 7 N -0.760 5.760 8 C -0.239 4.239 9 H 0.051 0.949 10 C -0.068 4.068 11 N -0.987 5.987 12 Si 0.962 3.038 13 H -0.277 1.277 14 H -0.295 1.295 15 H -0.246 1.246 16 C 0.043 3.957 17 N -0.335 5.335 18 H 0.088 0.912 19 H 0.111 0.889 20 H 0.089 0.911 21 H 0.202 0.798 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.015 0.985 25 H 0.018 0.982 26 H 0.368 0.632 27 H 0.259 0.741 28 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.747 -6.485 12.291 21.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.165 5.165 3 C -0.086 4.086 4 C -0.257 4.257 5 C -0.074 4.074 6 C 0.036 3.964 7 N -0.406 5.406 8 C -0.370 4.370 9 H 0.069 0.931 10 C -0.259 4.259 11 N -0.637 5.637 12 Si 0.788 3.212 13 H -0.203 1.203 14 H -0.222 1.222 15 H -0.170 1.170 16 C -0.142 4.142 17 N -0.157 5.157 18 H 0.107 0.893 19 H 0.130 0.870 20 H 0.108 0.892 21 H 0.219 0.781 22 H 0.094 0.906 23 H 0.096 0.904 24 H 0.033 0.967 25 H 0.036 0.964 26 H 0.202 0.798 27 H 0.067 0.933 28 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -16.742 -7.507 12.070 21.961 hybrid contribution 1.320 1.075 0.204 1.714 sum -15.422 -6.432 12.274 20.733 Atomic orbital electron populations 1.22180 0.72003 1.05798 1.04633 1.48804 1.07939 1.03325 1.56471 1.22814 0.90536 0.94518 1.00736 1.20078 0.94880 0.93898 1.16860 1.19872 0.94041 0.98352 0.95143 1.20751 0.87175 0.92144 0.96305 1.42741 1.32931 1.61000 1.03889 1.19054 1.07426 1.24157 0.86393 0.93117 1.25612 0.98945 1.00663 1.00676 1.69903 1.25021 1.41962 1.26862 0.85305 0.78852 0.77177 0.79840 1.20289 1.22194 1.16988 1.24111 0.95472 0.95229 0.99355 1.77235 1.02292 1.09863 1.26328 0.89343 0.87019 0.89250 0.78108 0.90638 0.90360 0.96710 0.96365 0.79814 0.93280 0.78976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.17 11.47 127.77 1.47 2.63 15 2 N -0.38 -8.77 4.01 -369.57 -1.48 -10.25 15 3 C 0.06 1.40 11.40 83.54 0.95 2.35 15 4 C -0.25 -6.70 5.35 -20.14 -0.11 -6.80 15 5 C -0.04 -1.04 5.81 29.85 0.17 -0.86 15 6 C 0.16 6.41 6.24 86.38 0.54 6.95 15 7 N -0.76 -36.49 5.41 -343.45 -1.86 -38.34 15 8 C -0.24 -14.15 10.47 84.03 0.88 -13.27 15 9 H 0.05 3.31 8.06 -2.91 -0.02 3.28 15 10 C -0.07 -4.09 5.50 84.86 0.47 -3.62 15 11 N -0.99 -64.53 13.97 21.65 0.30 -64.23 15 12 Si 0.96 45.65 27.73 68.60 1.90 47.55 15 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 15 14 H -0.30 -14.13 7.11 99.48 0.71 -13.42 15 15 H -0.25 -10.31 6.52 99.48 0.65 -9.67 15 16 C 0.04 1.20 11.96 85.24 1.02 2.22 15 17 N -0.33 -9.54 12.58 -57.03 -0.72 -10.26 15 18 H 0.09 0.82 8.14 -2.39 -0.02 0.80 15 19 H 0.11 0.82 8.14 -2.39 -0.02 0.80 15 20 H 0.09 1.08 8.14 -2.39 -0.02 1.06 15 21 H 0.20 3.24 8.06 -2.91 -0.02 3.22 15 22 H 0.08 2.13 8.14 -2.39 -0.02 2.11 15 23 H 0.08 2.12 8.14 -2.39 -0.02 2.10 15 24 H 0.01 0.62 8.14 -2.39 -0.02 0.60 15 25 H 0.02 0.74 8.14 -2.39 -0.02 0.72 15 26 H 0.37 16.42 5.53 -92.71 -0.51 15.91 15 27 H 0.26 15.99 8.31 -92.71 -0.77 15.22 15 28 H 0.19 4.54 8.06 -2.91 -0.02 4.51 15 Total: -1.00 -74.85 247.66 4.11 -70.74 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.57 Total: 15.19 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 5.39 Total: -10.40 kcal Atomic # 7 Polarization: -119.33 SS G_CDS: -3.75 Total: -123.08 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.90 Total: 47.55 kcal Total: -74.85 4.11 -70.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087766541.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.628 kcal (2) G-P(sol) polarization free energy of solvation -74.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds