Wall clock time and date at job start Mon Mar 30 2020 03:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00043 * 2 1 4 4 H 1.48494 * 109.47066 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47295 * 240.00016 * 3 2 1 6 6 H 1.48505 * 109.46714 * 119.99940 * 3 2 1 7 7 C 1.37882 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00061 * 341.77484 * 7 2 1 9 9 C 1.50702 * 119.99807 * 161.78346 * 7 2 1 10 10 H 1.08996 * 109.50400 * 54.51635 * 9 7 2 11 11 C 1.53119 * 109.50169 * 294.43486 * 9 7 2 12 12 C 1.53120 * 109.15793 * 182.40723 * 11 9 7 13 13 C 1.53038 * 109.28065 * 57.65412 * 12 11 9 14 14 N 1.46847 * 109.52390 * 300.82302 * 13 12 11 15 15 C 1.46896 * 111.00067 * 185.83855 * 14 13 12 16 16 C 1.53000 * 117.49881 * 124.65998 * 15 14 13 17 17 C 1.52996 * 60.00543 * 252.51188 * 16 15 14 18 18 C 1.46839 * 111.19919 * 61.73605 * 14 13 12 19 19 H 0.97000 * 119.99868 * 174.67299 * 1 2 3 20 20 H 1.09003 * 109.52370 * 302.31106 * 11 9 7 21 21 H 1.09000 * 109.52359 * 62.44107 * 11 9 7 22 22 H 1.09003 * 109.50102 * 177.59643 * 12 11 9 23 23 H 1.09004 * 109.50613 * 297.67324 * 12 11 9 24 24 H 1.09006 * 109.45743 * 60.83707 * 13 12 11 25 25 H 1.09002 * 109.45995 * 180.81249 * 13 12 11 26 26 H 1.09001 * 115.55196 * 270.37387 * 15 14 13 27 27 H 1.08997 * 117.49826 * 0.02562 * 16 15 14 28 28 H 1.09000 * 117.49679 * 145.01929 * 16 15 14 29 29 H 1.08998 * 117.49943 * 252.51197 * 17 16 15 30 30 H 1.08996 * 117.52062 * 107.47807 * 17 16 15 31 31 H 1.09006 * 109.46328 * 178.24000 * 18 14 13 32 32 H 1.09009 * 109.46232 * 58.27605 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 1.5051 -2.1060 0.2916 9 6 3.4549 -1.2266 -0.4085 10 1 4.0187 -0.5151 0.1947 11 6 3.5781 -0.8529 -1.8883 12 6 5.0472 -0.9467 -2.3096 13 6 5.5605 -2.3632 -2.0408 14 7 5.4217 -2.6726 -0.6120 15 6 6.0309 -3.9705 -0.2928 16 6 7.0962 -4.0000 0.8050 17 6 7.5029 -4.1695 -0.6601 18 6 4.0143 -2.6349 -0.1949 19 1 -0.4850 -0.8364 -0.0780 20 1 2.9823 -1.5406 -2.4886 21 1 3.2197 0.1656 -2.0378 22 1 5.1358 -0.7232 -3.3728 23 1 5.6366 -0.2307 -1.7369 24 1 4.9795 -3.0769 -2.6251 25 1 6.6103 -2.4293 -2.3264 26 1 5.3702 -4.8334 -0.3768 27 1 7.3446 -3.0564 1.2907 28 1 7.1363 -4.8824 1.4437 29 1 7.8106 -5.1633 -0.9853 30 1 8.0190 -3.3374 -1.1390 31 1 3.9411 -2.8986 0.8603 32 1 3.4406 -3.3474 -0.7877 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107221473.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:43 Heat of formation + Delta-G solvation = -3.283930 kcal Electronic energy + Delta-G solvation = -12692.139676 eV Core-core repulsion = 10651.959357 eV Total energy + Delta-G solvation = -2040.180319 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.18278 -37.40366 -34.92514 -32.55732 -31.93382 -26.58249 -25.20863 -23.47928 -22.60137 -21.47784 -20.45031 -19.60919 -17.50778 -16.42543 -15.70322 -15.49578 -15.20261 -14.94344 -14.38589 -14.24618 -13.83886 -13.25653 -13.03545 -12.60405 -12.32977 -12.23021 -11.84685 -11.76309 -11.39810 -11.33992 -11.09731 -10.98589 -10.66897 -10.43208 -9.21725 -8.74395 -6.36611 1.46547 1.53716 1.74383 2.50439 2.86413 2.93893 3.04300 4.00409 4.06052 4.08754 4.13306 4.21268 4.39152 4.45693 4.61851 4.68070 4.77671 4.82533 4.86337 4.95936 5.04849 5.12407 5.21544 5.26071 5.34432 5.48708 5.74012 5.90368 6.03541 6.27955 6.31594 6.57179 7.39319 8.62214 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.052246 B = 0.010476 C = 0.009892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.792687 B = 2672.134873 C = 2829.956904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.017 4.017 3 Si 1.082 2.918 4 H -0.290 1.290 5 H -0.239 1.239 6 H -0.268 1.268 7 C -0.605 4.605 8 H 0.013 0.987 9 C 0.024 3.976 10 H 0.027 0.973 11 C -0.123 4.123 12 C -0.114 4.114 13 C 0.063 3.937 14 N -0.519 5.519 15 C -0.024 4.024 16 C -0.162 4.162 17 C -0.152 4.152 18 C 0.093 3.907 19 H 0.251 0.749 20 H 0.032 0.968 21 H 0.051 0.949 22 H 0.082 0.918 23 H 0.067 0.933 24 H 0.021 0.979 25 H 0.096 0.904 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.051 0.949 32 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.005 -4.843 -3.658 17.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.215 4.215 3 Si 0.903 3.097 4 H -0.217 1.217 5 H -0.163 1.163 6 H -0.193 1.193 7 C -0.643 4.643 8 H 0.032 0.968 9 C 0.005 3.995 10 H 0.045 0.955 11 C -0.160 4.160 12 C -0.152 4.152 13 C -0.064 4.064 14 N -0.243 5.243 15 C -0.133 4.133 16 C -0.200 4.200 17 C -0.189 4.189 18 C -0.035 4.035 19 H 0.060 0.940 20 H 0.051 0.949 21 H 0.070 0.930 22 H 0.101 0.899 23 H 0.086 0.914 24 H 0.039 0.961 25 H 0.114 0.886 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.125 0.875 29 H 0.132 0.868 30 H 0.120 0.880 31 H 0.069 0.931 32 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 16.052 -2.874 -3.335 16.644 hybrid contribution -1.351 -2.645 -0.209 2.977 sum 14.701 -5.518 -3.544 16.097 Atomic orbital electron populations 1.70970 1.08438 1.29439 1.48658 1.27205 0.95966 1.06274 0.92010 0.83626 0.74897 0.71655 0.79511 1.21660 1.16314 1.19323 1.22216 0.97369 0.94968 1.49743 0.96830 1.18951 0.93522 0.93556 0.93463 0.95471 1.21981 0.96035 1.00419 0.97611 1.21657 0.95318 0.96808 1.01413 1.22085 1.01279 0.95984 0.87060 1.61785 1.15913 1.28514 1.18099 1.22510 0.92109 0.91041 1.07633 1.23096 1.01445 1.03404 0.92036 1.23116 0.94010 1.03799 0.98018 1.21760 0.86268 0.97259 0.98196 0.94008 0.94865 0.93007 0.89901 0.91378 0.96084 0.88630 0.90418 0.89059 0.87455 0.86782 0.87974 0.93050 0.97691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.34 13.70 21.45 0.29 -60.05 16 2 C -0.02 -1.00 5.34 84.66 0.45 -0.55 16 3 Si 1.08 51.17 26.42 68.60 1.81 52.99 16 4 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 5 H -0.24 -9.96 5.57 99.48 0.55 -9.40 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.60 -35.67 8.82 25.60 0.23 -35.44 16 8 H 0.01 0.87 7.99 -2.91 -0.02 0.85 16 9 C 0.02 1.19 1.84 -11.49 -0.02 1.17 16 10 H 0.03 1.34 6.79 -2.39 -0.02 1.32 16 11 C -0.12 -5.30 4.97 30.67 0.15 -5.15 16 12 C -0.11 -3.78 6.09 30.65 0.19 -3.59 16 13 C 0.06 1.96 5.34 86.33 0.46 2.42 16 14 N -0.52 -18.17 4.80 -871.10 -4.18 -22.35 16 15 C -0.02 -0.69 5.30 44.92 0.24 -0.46 16 16 C -0.16 -3.83 10.46 30.59 0.32 -3.51 16 17 C -0.15 -3.17 9.70 30.60 0.30 -2.87 16 18 C 0.09 4.04 4.65 86.33 0.40 4.44 16 19 H 0.25 16.38 8.73 -92.71 -0.81 15.57 16 20 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 21 H 0.05 2.31 4.85 -2.39 -0.01 2.30 16 22 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 23 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 25 H 0.10 2.38 6.69 -2.39 -0.02 2.37 16 26 H 0.08 2.30 8.08 -2.39 -0.02 2.28 16 27 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.11 1.85 8.14 -2.39 -0.02 1.84 16 30 H 0.10 2.05 7.25 -2.39 -0.02 2.03 16 31 H 0.05 2.30 8.12 -2.38 -0.02 2.29 16 32 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 Total: -1.00 -66.18 250.86 1.52 -64.66 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 0.88 Total: 8.29 kcal Atomic # 6 Polarization: -46.25 SS G_CDS: 2.71 Total: -43.53 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -3.89 Total: -82.40 kcal Atomic # 14 Polarization: 51.17 SS G_CDS: 1.81 Total: 52.99 kcal Total: -66.18 1.52 -64.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107221473.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.378 kcal (2) G-P(sol) polarization free energy of solvation -66.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds