Wall clock time and date at job start Mon Mar 30 2020 02:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00163 * 2 1 4 4 H 1.48494 * 109.47444 * 274.99444 * 3 2 1 5 5 H 1.48505 * 109.46874 * 34.99618 * 3 2 1 6 6 H 1.48502 * 109.46781 * 154.99213 * 3 2 1 7 7 C 1.37888 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99501 * 189.74504 * 7 2 1 9 9 C 1.51171 * 119.99679 * 9.74857 * 7 2 1 10 10 H 1.10293 * 107.34927 * 303.09905 * 9 7 2 11 11 C 1.52017 * 109.57525 * 60.71416 * 9 7 2 12 12 C 1.52024 * 113.63544 * 81.52088 * 11 9 7 13 13 N 1.45792 * 112.89407 * 44.03749 * 12 11 9 14 14 C 1.45946 * 113.96283 * 71.16530 * 13 12 11 15 15 C 1.52536 * 111.90411 * 290.25197 * 14 13 12 16 16 C 1.52552 * 111.51005 * 310.18511 * 15 14 13 17 17 C 1.52175 * 109.63911 * 185.55637 * 9 7 2 18 18 H 1.09990 * 108.89138 * 46.04669 * 17 9 7 19 19 C 1.46549 * 111.82379 * 302.78135 * 13 12 11 20 20 H 0.96998 * 120.00073 * 0.02562 * 1 2 3 21 21 H 1.10770 * 107.82940 * 322.12120 * 11 9 7 22 22 H 1.08902 * 110.75460 * 206.90283 * 11 9 7 23 23 H 1.09722 * 109.24623 * 282.32645 * 12 11 9 24 24 H 1.09811 * 109.01850 * 165.39656 * 12 11 9 25 25 H 1.09546 * 109.30561 * 169.32238 * 14 13 12 26 26 H 1.09498 * 109.40464 * 51.36888 * 14 13 12 27 27 H 1.10333 * 108.02236 * 191.55074 * 15 14 13 28 28 H 1.08396 * 110.99020 * 74.53698 * 15 14 13 29 29 H 1.09416 * 109.37994 * 288.41559 * 16 15 14 30 30 H 1.09459 * 109.27044 * 169.99583 * 16 15 14 31 31 H 1.08718 * 110.06978 * 304.99392 * 19 13 12 32 32 H 1.09043 * 109.66541 * 184.33696 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1074 -1.3947 5 1 1.5034 2.6199 0.8030 6 1 3.5955 1.4119 0.5919 7 6 2.0046 -1.1942 0.0005 8 1 3.0729 -1.2008 0.1589 9 6 1.2650 -2.4939 -0.2206 10 1 0.4805 -2.5614 0.5518 11 6 0.5966 -2.4738 -1.5858 12 6 1.5349 -2.8257 -2.7290 13 7 2.3871 -3.9705 -2.4314 14 6 1.6776 -5.2455 -2.4005 15 6 0.7467 -5.3497 -1.1966 16 6 1.4646 -4.9841 0.0988 17 6 2.2208 -3.6638 -0.0375 18 1 2.8099 -3.5026 0.8772 19 6 3.1858 -3.7553 -1.2216 20 1 -0.4850 0.8400 -0.0004 21 1 0.2176 -1.4481 -1.7628 22 1 -0.2812 -3.1182 -1.5953 23 1 2.1647 -1.9574 -2.9603 24 1 0.9401 -3.0450 -3.6256 25 1 2.4048 -6.0639 -2.3625 26 1 1.0917 -5.3581 -3.3187 27 1 0.4078 -6.3966 -1.1167 28 1 -0.1384 -4.7397 -1.3362 29 1 2.1700 -5.7788 0.3598 30 1 0.7308 -4.8967 0.9063 31 1 3.7593 -2.8362 -1.3118 32 1 3.8637 -4.5967 -1.0750 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107401750.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:14 Heat of formation + Delta-G solvation = -31.106785 kcal Electronic energy + Delta-G solvation = -13327.734337 eV Core-core repulsion = 11286.347529 eV Total energy + Delta-G solvation = -2041.386809 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.10195 -35.61843 -33.92086 -32.89794 -31.30703 -28.21431 -25.59758 -24.50086 -22.79450 -22.02446 -19.39562 -17.85880 -16.77955 -16.57554 -15.75809 -15.46390 -15.16883 -14.59900 -14.22246 -13.92048 -13.43765 -13.18768 -12.84186 -12.75600 -12.59819 -12.36550 -12.10107 -11.80801 -11.72762 -11.54413 -11.08305 -10.69986 -10.49135 -10.30661 -8.76069 -8.12208 -6.20456 1.38139 1.40105 1.49432 2.42214 3.17525 3.29369 3.96536 4.04667 4.19401 4.33927 4.41496 4.56755 4.60349 4.72562 4.79709 4.80589 4.94965 5.08727 5.11777 5.15288 5.23644 5.31421 5.37644 5.48564 5.60509 5.67237 5.87478 6.08792 6.38156 6.43604 6.58124 6.91555 7.46026 8.95360 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.054214 B = 0.012647 C = 0.012479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.347343 B = 2213.516777 C = 2243.296210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.012 3.988 3 Si 0.946 3.054 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.520 4.520 8 H 0.051 0.949 9 C 0.060 3.940 10 H -0.025 1.025 11 C -0.121 4.121 12 C 0.086 3.914 13 N -0.549 5.549 14 C 0.069 3.931 15 C -0.151 4.151 16 C -0.103 4.103 17 C -0.112 4.112 18 H 0.045 0.955 19 C 0.082 3.918 20 H 0.259 0.741 21 H 0.038 0.962 22 H 0.027 0.973 23 H 0.049 0.951 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.058 0.942 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.578 -9.010 -3.998 10.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.186 4.186 3 Si 0.772 3.228 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.558 4.558 8 H 0.069 0.931 9 C 0.042 3.958 10 H -0.007 1.007 11 C -0.161 4.161 12 C -0.042 4.042 13 N -0.270 5.270 14 C -0.059 4.059 15 C -0.190 4.190 16 C -0.141 4.141 17 C -0.132 4.132 18 H 0.064 0.936 19 C -0.046 4.046 20 H 0.068 0.932 21 H 0.056 0.944 22 H 0.045 0.955 23 H 0.068 0.932 24 H 0.086 0.914 25 H 0.106 0.894 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.735 -8.928 -4.374 10.621 hybrid contribution -0.693 1.471 1.062 1.942 sum 3.042 -7.457 -3.312 8.708 Atomic orbital electron populations 1.70107 1.07359 1.27005 1.51577 1.25686 0.95448 1.02249 0.95215 0.85721 0.79005 0.79958 0.78106 1.20123 1.21309 1.19153 1.21662 0.93997 0.92277 1.47911 0.93078 1.18302 0.93029 0.92388 0.92097 1.00651 1.21691 0.96946 1.00209 0.97246 1.21479 0.94134 0.92490 0.96106 1.60427 1.27298 1.02603 1.36709 1.21876 0.96184 0.90939 0.96907 1.22051 0.99035 1.01827 0.96104 1.21383 0.98994 0.96535 0.97195 1.21511 0.97809 0.94876 0.98976 0.93613 1.21767 0.94504 1.01136 0.87157 0.93244 0.94352 0.95486 0.93207 0.91407 0.89417 0.90505 0.90604 0.93471 0.90760 0.94323 0.92333 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.81 11.91 21.45 0.26 -54.55 16 2 C 0.01 0.68 4.92 84.66 0.42 1.09 16 3 Si 0.95 44.38 29.55 68.60 2.03 46.40 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 5 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 7 C -0.52 -28.90 7.98 25.75 0.21 -28.69 16 8 H 0.05 2.80 7.52 -2.91 -0.02 2.78 16 9 C 0.06 3.07 1.63 -11.99 -0.02 3.05 16 10 H -0.02 -1.46 8.13 -1.69 -0.01 -1.48 16 11 C -0.12 -5.79 4.37 29.95 0.13 -5.66 16 12 C 0.09 3.46 5.72 86.19 0.49 3.95 16 13 N -0.55 -19.31 4.80 -902.11 -4.33 -23.65 16 14 C 0.07 1.98 5.78 86.33 0.50 2.48 16 15 C -0.15 -4.67 5.23 30.29 0.16 -4.51 16 16 C -0.10 -3.55 5.41 30.37 0.16 -3.38 16 17 C -0.11 -4.60 2.34 -11.14 -0.03 -4.63 16 18 H 0.05 1.95 8.12 -1.86 -0.02 1.93 16 19 C 0.08 3.01 5.56 86.38 0.48 3.49 16 20 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 21 H 0.04 2.10 6.19 -1.43 -0.01 2.10 16 22 H 0.03 1.25 5.85 -2.44 -0.01 1.23 16 23 H 0.05 2.14 8.20 -2.00 -0.02 2.13 16 24 H 0.07 2.41 8.12 -1.95 -0.02 2.40 16 25 H 0.09 2.12 8.19 -2.10 -0.02 2.11 16 26 H 0.08 2.01 8.10 -2.12 -0.02 1.99 16 27 H 0.08 1.89 8.25 -1.67 -0.01 1.87 16 28 H 0.05 1.68 5.50 -2.70 -0.01 1.67 16 29 H 0.07 2.12 8.18 -2.17 -0.02 2.11 16 30 H 0.04 1.41 8.16 -2.14 -0.02 1.39 16 31 H 0.06 2.36 7.53 -2.54 -0.02 2.34 16 32 H 0.08 2.58 8.14 -2.36 -0.02 2.56 16 Total: -1.00 -61.07 239.01 1.56 -59.51 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: 1.11 Total: 5.09 kcal Atomic # 6 Polarization: -35.31 SS G_CDS: 2.50 Total: -32.81 kcal Atomic # 7 Polarization: -74.12 SS G_CDS: -4.08 Total: -78.20 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -61.07 1.56 -59.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107401750.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.399 kcal (2) G-P(sol) polarization free energy of solvation -61.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds