Wall clock time and date at job start Mon Mar 30 2020 02:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00010 * 2 1 4 4 H 1.48500 * 109.46986 * 240.00339 * 3 2 1 5 5 H 1.48502 * 109.46858 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47224 * 119.99973 * 3 2 1 7 7 C 1.38812 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99887 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.47748 * 125.94040 * 359.97438 * 9 7 2 11 11 C 1.55070 * 104.89580 * 201.91942 * 10 9 7 12 12 C 1.56033 * 101.13884 * 322.97318 * 11 10 9 13 13 H 1.08995 * 112.02486 * 157.77024 * 12 11 10 14 14 C 1.52901 * 106.91048 * 280.52475 * 12 11 10 15 15 C 1.52873 * 109.59580 * 165.56415 * 14 12 11 16 16 C 1.52664 * 108.67119 * 294.97151 * 15 14 12 17 17 C 1.51532 * 110.83058 * 60.01706 * 16 15 14 18 18 C 1.46353 * 125.93762 * 179.97438 * 9 7 2 19 19 H 1.08997 * 105.79930 * 69.54887 * 18 9 7 20 20 H 0.96998 * 120.00090 * 359.97438 * 1 2 3 21 21 H 1.08998 * 110.35499 * 83.06251 * 10 9 7 22 22 H 1.09003 * 110.35053 * 320.77199 * 10 9 7 23 23 H 1.08998 * 111.08662 * 205.00465 * 11 10 9 24 24 H 1.08997 * 111.12595 * 80.95510 * 11 10 9 25 25 H 1.09002 * 109.44640 * 285.59598 * 14 12 11 26 26 H 1.09003 * 109.44971 * 45.53269 * 14 12 11 27 27 H 1.09002 * 109.60251 * 54.76229 * 15 14 12 28 28 H 1.09003 * 109.59940 * 175.24719 * 15 14 12 29 29 H 1.08998 * 109.22810 * 299.66509 * 16 15 14 30 30 H 1.08997 * 109.15997 * 180.32912 * 16 15 14 31 31 H 1.09001 * 108.31328 * 191.67989 * 17 16 15 32 32 H 1.09005 * 108.16525 * 74.60417 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1439 -2.5409 0.0005 11 6 -0.3961 -3.9652 0.5595 12 6 0.7949 -4.7517 -0.0710 13 1 1.0266 -5.6589 0.4870 14 6 0.4084 -5.0593 -1.5180 15 6 1.6471 -5.5025 -2.2964 16 6 2.6225 -4.3305 -2.3715 17 6 3.0388 -3.8862 -0.9838 18 6 1.9223 -3.7244 -0.0016 19 1 2.3787 -3.8464 0.9807 20 1 -0.4850 0.8400 0.0004 21 1 -0.5346 -2.4569 -1.0136 22 1 -0.6024 -1.7930 0.6475 23 1 -1.3524 -4.3583 0.2143 24 1 -0.3405 -3.9756 1.6480 25 1 -0.3346 -5.8568 -1.5335 26 1 -0.0097 -4.1649 -1.9800 27 1 2.1203 -6.3405 -1.7845 28 1 1.3581 -5.8023 -3.3038 29 1 2.1436 -3.4974 -2.8859 30 1 3.5069 -4.6363 -2.9304 31 1 3.5589 -2.9323 -1.0713 32 1 3.7395 -4.6213 -0.5876 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132761773.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:25 Heat of formation + Delta-G solvation = 7.721190 kcal Electronic energy + Delta-G solvation = -13148.955498 eV Core-core repulsion = 11109.252397 eV Total energy + Delta-G solvation = -2039.703101 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.00381 -34.43842 -32.43550 -31.01227 -28.15677 -27.23227 -24.22564 -22.29541 -20.92169 -19.93045 -18.15283 -16.30738 -15.00569 -14.71957 -13.95475 -13.80122 -13.72256 -13.38673 -12.05143 -11.87123 -11.50164 -11.26397 -11.15515 -11.00142 -10.82688 -10.75940 -10.49604 -10.12936 -9.85013 -9.70643 -9.46183 -9.26584 -9.15433 -8.54407 -6.70526 -5.59402 -2.97467 3.43834 3.47957 3.49183 4.54629 5.24748 5.28310 5.34211 5.57070 5.65650 5.79334 5.87368 5.95004 6.06803 6.10294 6.23618 6.33862 6.41254 6.50835 6.55305 6.63162 6.71292 6.82862 6.91963 6.94317 7.19436 7.24810 7.61867 7.72023 7.94254 8.43191 9.29853 9.92463 10.60509 11.46567 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.046522 B = 0.013060 C = 0.011303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.723669 B = 2143.454971 C = 2476.666332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.911 3.089 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.216 4.216 8 H 0.076 0.924 9 N -0.594 5.594 10 C 0.158 3.842 11 C -0.146 4.146 12 C -0.092 4.092 13 H 0.069 0.931 14 C -0.109 4.109 15 C -0.115 4.115 16 C -0.109 4.109 17 C -0.120 4.120 18 C 0.172 3.828 19 H 0.004 0.996 20 H 0.251 0.749 21 H 0.012 0.988 22 H 0.096 0.904 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.540 -9.020 -2.137 9.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.742 3.258 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.345 4.345 8 H 0.094 0.906 9 N -0.319 5.319 10 C 0.033 3.967 11 C -0.185 4.185 12 C -0.111 4.111 13 H 0.087 0.913 14 C -0.147 4.147 15 C -0.152 4.152 16 C -0.146 4.146 17 C -0.160 4.160 18 C 0.065 3.935 19 H 0.021 0.979 20 H 0.062 0.938 21 H 0.030 0.970 22 H 0.114 0.886 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.501 -8.762 -2.118 9.139 hybrid contribution 0.536 0.881 -0.078 1.034 sum 2.037 -7.881 -2.197 8.432 Atomic orbital electron populations 1.69847 1.04842 1.24736 1.57774 1.24750 0.95673 0.97524 1.02818 0.86205 0.78419 0.83377 0.77830 1.21325 1.21653 1.21261 1.18958 0.90426 0.82479 1.42626 0.90632 1.44497 1.01818 0.99399 1.86164 1.21869 0.84726 0.91776 0.98303 1.23297 0.96293 0.99383 0.99501 1.21921 0.96539 0.96920 0.95676 0.91276 1.21523 0.96678 1.00846 0.95604 1.21402 0.96783 0.97879 0.99146 1.21047 0.98071 0.97897 0.97602 1.20897 0.98892 1.00871 0.95308 1.19545 0.91883 0.86620 0.95486 0.97883 0.93836 0.96989 0.88602 0.92495 0.92551 0.93190 0.91190 0.92728 0.92944 0.92081 0.93435 0.91507 0.94077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.42 10.17 55.49 0.56 -26.85 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 3 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.22 -6.10 9.56 -15.06 -0.14 -6.24 16 8 H 0.08 2.06 7.08 -52.49 -0.37 1.69 16 9 N -0.59 -15.44 3.30 -165.61 -0.55 -15.99 16 10 C 0.16 3.94 5.36 -2.26 -0.01 3.93 16 11 C -0.15 -2.91 6.49 -24.01 -0.16 -3.07 16 12 C -0.09 -1.70 3.48 -89.21 -0.31 -2.01 16 13 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 14 C -0.11 -1.84 4.99 -26.85 -0.13 -1.98 16 15 C -0.11 -1.75 5.94 -26.97 -0.16 -1.91 16 16 C -0.11 -1.87 5.92 -27.65 -0.16 -2.04 16 17 C -0.12 -2.33 5.46 -29.16 -0.16 -2.49 16 18 C 0.17 3.72 2.70 -69.86 -0.19 3.54 16 19 H 0.00 0.08 8.08 -51.93 -0.42 -0.34 16 20 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 21 H 0.01 0.32 7.17 -51.93 -0.37 -0.05 16 22 H 0.10 2.69 6.06 -51.93 -0.31 2.37 16 23 H 0.06 1.01 7.98 -51.93 -0.41 0.59 16 24 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.07 1.35 6.61 -51.93 -0.34 1.01 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.43 6.65 -51.93 -0.35 1.08 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 242.82 15.07 3.66 3.66 Total: -1.00 -29.46 242.82 -7.97 -37.43 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -5.10 Total: -2.96 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -1.52 Total: -12.72 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.02 Total: -42.84 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.46 -7.97 -37.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132761773.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.153 kcal (2) G-P(sol) polarization free energy of solvation -29.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds