Wall clock time and date at job start Mon Mar 30 2020 02:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.46906 * 110.99793 * 180.02562 * 12 11 10 14 14 C 1.54635 * 111.03568 * 267.02498 * 13 12 11 15 15 C 1.51101 * 104.72114 * 217.33376 * 14 13 12 16 16 C 1.30524 * 111.10870 * 16.43992 * 15 14 13 17 17 C 1.51098 * 111.10073 * 359.97438 * 16 15 14 18 18 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 20 20 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 21 21 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 22 22 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 23 23 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 24 24 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 25 25 H 1.00898 * 110.99877 * 56.04956 * 12 11 10 26 26 H 1.09003 * 110.91580 * 31.03576 * 13 12 11 27 27 H 1.09001 * 110.38933 * 336.14692 * 14 13 12 28 28 H 1.09000 * 110.38780 * 98.52330 * 14 13 12 29 29 H 1.08004 * 124.44514 * 196.45721 * 15 14 13 30 30 H 1.07996 * 124.45110 * 180.02562 * 16 15 14 31 31 H 1.09004 * 110.38832 * 224.75279 * 17 16 15 32 32 H 1.09001 * 110.48382 * 102.42471 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4347 -6.1037 -0.0018 13 6 1.7343 -7.3950 -0.0018 14 6 1.5361 -7.9190 1.4395 15 6 1.7286 -9.4140 1.3345 16 6 2.3194 -9.7344 0.2155 17 6 2.6188 -8.5065 -0.6125 18 1 -0.4849 0.8401 0.0004 19 1 0.6240 -2.5566 -0.8903 20 1 0.6246 -2.5571 0.8897 21 1 2.8725 -3.6048 0.8878 22 1 2.8712 -3.6040 -0.8921 23 1 0.8543 -5.0449 0.8894 24 1 0.8525 -5.0447 -0.8905 25 1 3.0701 -6.0366 0.7791 26 1 0.7817 -7.3210 -0.5264 27 1 2.2814 -7.4861 2.1068 28 1 0.5305 -7.6894 1.7920 29 1 1.4179 -10.1243 2.0864 30 1 2.5616 -10.7445 -0.0800 31 1 2.3497 -8.6766 -1.6551 32 1 3.6726 -8.2397 -0.5319 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132922005.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:18 Heat of formation + Delta-G solvation = -21.021555 kcal Electronic energy + Delta-G solvation = -11729.449111 eV Core-core repulsion = 9688.499630 eV Total energy + Delta-G solvation = -2040.949480 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.92351 -36.89127 -35.06956 -32.77828 -29.18792 -28.98971 -26.96772 -24.16438 -22.18515 -21.24837 -19.60666 -18.49744 -17.15446 -16.70378 -16.32469 -16.22642 -15.15598 -14.36809 -14.03102 -13.75543 -13.58246 -13.19777 -13.00746 -12.80624 -12.51019 -12.44215 -12.38209 -12.13173 -12.03427 -11.53266 -11.38043 -11.08012 -10.54761 -9.78733 -9.32715 -8.19894 -6.31236 1.38516 1.40480 1.43905 1.51900 2.41552 3.13150 3.17928 3.78022 3.78744 4.11816 4.27285 4.37612 4.43552 4.63081 4.71502 4.79570 4.81327 4.92740 5.03978 5.05567 5.10364 5.19286 5.24877 5.52003 5.62712 5.74649 5.85573 6.02445 6.10244 6.27392 6.47742 6.85459 7.38082 8.91955 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.103893 B = 0.005285 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 269.442988 B = 5296.897078 C = 5387.370380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.025 3.975 10 C -0.093 4.093 11 C 0.073 3.927 12 N -0.682 5.682 13 C 0.076 3.924 14 C -0.131 4.131 15 C -0.174 4.174 16 C -0.163 4.163 17 C -0.091 4.091 18 H 0.264 0.736 19 H -0.009 1.009 20 H -0.009 1.009 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.023 0.977 24 H 0.060 0.940 25 H 0.345 0.655 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.138 0.862 30 H 0.144 0.856 31 H 0.074 0.926 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.400 -16.779 1.670 17.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.131 4.131 11 C -0.057 4.057 12 N -0.312 5.312 13 C -0.035 4.035 14 C -0.170 4.170 15 C -0.192 4.192 16 C -0.181 4.181 17 C -0.129 4.129 18 H 0.072 0.928 19 H 0.009 0.991 20 H 0.009 0.991 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.042 0.958 24 H 0.079 0.921 25 H 0.164 0.836 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.156 0.844 30 H 0.162 0.838 31 H 0.093 0.907 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.341 -16.635 0.974 17.220 hybrid contribution -0.351 0.986 0.946 1.411 sum 3.990 -15.650 1.920 16.264 Atomic orbital electron populations 1.70098 1.07845 1.27859 1.51665 1.26005 0.95789 1.03435 0.94646 0.85478 0.78260 0.77953 0.79223 1.19165 1.20745 1.19109 1.21679 0.93563 0.92417 1.50649 0.92208 1.18975 0.94441 0.93149 0.94745 1.21384 0.98040 0.92919 1.00763 1.21856 0.94018 0.90216 0.99567 1.60506 1.19417 1.01042 1.50245 1.22529 0.96924 0.88831 0.95175 1.22125 1.01950 0.95107 0.97823 1.23307 1.00957 0.95927 0.98992 1.23475 0.99275 0.99197 0.96197 1.21357 1.00354 0.91790 0.99407 0.92750 0.99072 0.99070 0.93049 0.92865 0.95841 0.92126 0.83582 0.90384 0.90649 0.91636 0.84433 0.83847 0.90749 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.82 13.29 21.45 0.28 -57.54 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 3 Si 0.97 44.84 29.54 68.60 2.03 46.86 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.55 -31.81 9.11 25.60 0.23 -31.58 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.33 4.97 29.85 0.15 1.48 16 10 C -0.09 -3.96 5.41 30.59 0.17 -3.79 16 11 C 0.07 2.57 5.55 86.30 0.48 3.05 16 12 N -0.68 -19.88 6.37 -485.84 -3.09 -22.97 16 13 C 0.08 1.88 3.49 46.02 0.16 2.04 16 14 C -0.13 -2.89 6.51 30.53 0.20 -2.69 16 15 C -0.17 -3.22 10.77 26.26 0.28 -2.93 16 16 C -0.16 -2.91 10.78 26.26 0.28 -2.63 16 17 C -0.09 -1.93 6.55 30.53 0.20 -1.73 16 18 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 19 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 20 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 21 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 22 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 23 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.06 2.22 8.09 -2.39 -0.02 2.20 16 25 H 0.35 9.35 8.08 -89.70 -0.72 8.62 16 26 H 0.08 2.05 7.83 -2.39 -0.02 2.03 16 27 H 0.08 1.65 7.56 -2.39 -0.02 1.63 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 30 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.08 1.73 8.08 -2.39 -0.02 1.71 16 Total: -1.00 -63.59 267.90 2.18 -61.42 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.35 Total: 10.61 kcal Atomic # 6 Polarization: -40.99 SS G_CDS: 2.61 Total: -38.38 kcal Atomic # 7 Polarization: -77.70 SS G_CDS: -2.81 Total: -80.51 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -63.59 2.18 -61.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132922005.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.394 kcal (2) G-P(sol) polarization free energy of solvation -63.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds