Wall clock time and date at job start Mon Mar 30 2020 02:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34951 * 126.03463 * 2 1 4 4 C 1.35320 * 107.74569 * 180.02562 * 3 2 1 5 5 C 1.39866 * 107.91898 * 359.97438 * 4 3 2 6 6 C 1.50696 * 125.89915 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47697 * 125.01620 * 6 5 4 8 8 N 1.46494 * 109.47595 * 179.97438 * 7 6 5 9 9 C 1.36930 * 120.00358 * 179.97438 * 8 7 6 10 10 H 1.08007 * 119.99684 * 0.02562 * 9 8 7 11 11 C 1.38812 * 120.00417 * 179.97438 * 9 8 7 12 12 N 1.31624 * 119.99800 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00218 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47133 * 90.00278 * 13 11 9 15 15 H 1.48504 * 109.47208 * 210.00125 * 13 11 9 16 16 H 1.48505 * 109.47031 * 329.99960 * 13 11 9 17 17 N 1.30844 * 108.20609 * 0.02562 * 5 4 3 18 18 H 1.09005 * 109.46927 * 270.02579 * 1 2 3 19 19 H 1.08994 * 109.47314 * 30.02415 * 1 2 3 20 20 H 1.08998 * 109.46715 * 150.02896 * 1 2 3 21 21 H 1.07996 * 126.12664 * 359.95494 * 3 2 1 22 22 H 1.07993 * 126.03961 * 179.97438 * 4 3 2 23 23 H 1.09002 * 109.47294 * 245.01541 * 6 5 4 24 24 H 1.09000 * 109.47417 * 5.01101 * 6 5 4 25 25 H 1.09002 * 109.46684 * 300.00294 * 7 6 5 26 26 H 1.09001 * 109.46662 * 59.99582 * 7 6 5 27 27 H 0.97007 * 119.99647 * 359.97438 * 8 7 6 28 28 H 0.96997 * 119.99737 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5438 0.6666 -0.0006 5 6 3.5347 -0.7320 -0.0003 6 6 4.7497 -1.6235 -0.0014 7 6 4.6725 -2.5924 1.1802 8 7 5.8533 -3.4594 1.1789 9 6 6.0040 -4.4127 2.1503 10 1 5.2520 -4.5256 2.9173 11 6 7.1226 -5.2346 2.1487 12 7 8.0388 -5.0973 1.2137 13 14 7.3278 -6.5354 3.4735 14 1 6.7020 -7.8044 3.0224 15 1 8.7736 -6.7595 3.7276 16 1 6.6708 -6.0765 4.7238 17 7 2.2892 -1.1327 -0.0002 18 1 -0.3633 0.0005 1.0277 19 1 -0.3633 0.8897 -0.5142 20 1 -0.3633 -0.8902 -0.5134 21 1 1.9281 2.1193 -0.0007 22 1 4.4211 1.2964 -0.0011 23 1 4.7850 -2.1885 -0.9328 24 1 5.6484 -1.0131 0.0875 25 1 4.6372 -2.0273 2.1117 26 1 3.7738 -3.2028 1.0913 27 1 6.5285 -3.3582 0.4898 28 1 8.8206 -5.6714 1.2128 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227227362.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:08 Heat of formation + Delta-G solvation = 85.450406 kcal Electronic energy + Delta-G solvation = -11549.474447 eV Core-core repulsion = 9409.601594 eV Total energy + Delta-G solvation = -2139.872853 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.96744 -35.31825 -33.46077 -31.50738 -29.94892 -28.86905 -25.99112 -23.65987 -21.55929 -20.86414 -19.32318 -17.12290 -16.63266 -15.40191 -14.58325 -14.25298 -13.90391 -13.46994 -13.37493 -12.91880 -12.58935 -12.51695 -11.90054 -11.04375 -10.98727 -10.76202 -10.69689 -10.21043 -9.97071 -9.62877 -8.99842 -8.76702 -8.39876 -6.82002 -5.67616 -2.95619 2.03154 2.64301 3.02251 3.50227 3.54720 3.56910 4.54982 4.67276 4.84364 5.04957 5.13931 5.30101 5.50258 5.65679 5.85692 5.98859 6.05425 6.19518 6.30667 6.41759 6.88344 6.98183 7.03744 7.14084 7.79421 7.95145 8.51790 9.62495 10.20948 10.56570 11.55660 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.078277 B = 0.006285 C = 0.005982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 357.618089 B = 4454.263605 C = 4679.327521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.386 5.386 3 C 0.045 3.955 4 C -0.269 4.269 5 C 0.092 3.908 6 C -0.049 4.049 7 C 0.161 3.839 8 N -0.735 5.735 9 C -0.235 4.235 10 H 0.070 0.930 11 C -0.017 4.017 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.282 1.282 17 N -0.290 5.290 18 H 0.071 0.929 19 H 0.083 0.917 20 H 0.087 0.913 21 H 0.170 0.830 22 H 0.146 0.854 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.018 0.982 26 H 0.026 0.974 27 H 0.384 0.616 28 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.813 13.172 -3.412 18.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.168 5.168 3 C -0.101 4.101 4 C -0.298 4.298 5 C -0.075 4.075 6 C -0.089 4.089 7 C 0.033 3.967 8 N -0.379 5.379 9 C -0.366 4.366 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.218 1.218 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.113 5.113 18 H 0.089 0.911 19 H 0.101 0.899 20 H 0.105 0.895 21 H 0.187 0.813 22 H 0.164 0.836 23 H 0.099 0.901 24 H 0.101 0.899 25 H 0.036 0.964 26 H 0.044 0.956 27 H 0.217 0.783 28 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.814 12.088 -3.260 18.643 hybrid contribution 0.789 0.151 0.509 0.951 sum -13.025 12.238 -2.751 18.083 Atomic orbital electron populations 1.21767 0.74773 1.04085 1.03084 1.48549 1.06432 1.04057 1.57778 1.22449 0.91338 0.93245 1.03068 1.21472 0.96908 0.94655 1.16766 1.22439 0.93397 0.93885 0.97818 1.20265 0.91524 0.96076 1.01004 1.20560 0.91258 0.90968 0.93906 1.42365 1.22282 1.39491 1.33758 1.19251 1.03858 1.08958 1.04554 0.91209 1.24737 0.97307 1.00201 0.98979 1.69666 1.11683 1.41952 1.35148 0.86172 0.76803 0.81871 0.81273 1.21765 1.21797 1.20804 1.77431 1.01551 1.07072 1.25233 0.91051 0.89887 0.89457 0.81320 0.83590 0.90149 0.89925 0.96413 0.95641 0.78279 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.88 11.47 59.85 0.69 1.56 15 2 N -0.39 -5.21 4.01 -68.16 -0.27 -5.48 15 3 C 0.04 0.53 11.49 -17.22 -0.20 0.33 15 4 C -0.27 -3.82 10.72 -40.01 -0.43 -4.25 15 5 C 0.09 1.59 6.49 -82.41 -0.53 1.05 15 6 C -0.05 -0.91 5.91 -27.88 -0.16 -1.07 15 7 C 0.16 3.65 6.22 -4.04 -0.03 3.62 15 8 N -0.73 -19.94 5.60 -59.91 -0.34 -20.28 15 9 C -0.23 -6.96 9.99 -15.06 -0.15 -7.11 15 10 H 0.07 2.02 7.83 -52.48 -0.41 1.61 15 11 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 15 12 N -0.94 -29.22 13.06 55.49 0.72 -28.49 15 13 Si 0.91 23.21 29.55 -169.99 -5.02 18.18 15 14 H -0.29 -7.37 7.11 56.52 0.40 -6.97 15 15 H -0.29 -7.44 7.11 56.52 0.40 -7.04 15 16 H -0.28 -7.03 7.11 56.52 0.40 -6.62 15 17 N -0.29 -5.15 12.54 33.67 0.42 -4.72 15 18 H 0.07 0.52 8.14 -51.93 -0.42 0.10 15 19 H 0.08 0.43 8.14 -51.93 -0.42 0.01 15 20 H 0.09 0.73 8.14 -51.93 -0.42 0.30 15 21 H 0.17 1.26 8.06 -52.49 -0.42 0.83 15 22 H 0.15 1.76 8.06 -52.49 -0.42 1.34 15 23 H 0.08 1.48 8.14 -51.93 -0.42 1.06 15 24 H 0.08 1.42 8.12 -51.93 -0.42 1.00 15 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 15 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 15 27 H 0.38 10.68 7.67 -40.82 -0.31 10.37 15 28 H 0.25 7.64 8.31 -40.82 -0.34 7.30 15 LS Contribution 250.78 15.07 3.78 3.78 Total: -1.00 -34.73 250.78 -5.28 -40.02 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -3.66 Total: 3.46 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -0.91 Total: -6.46 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: 0.54 Total: -58.98 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.18 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -34.73 -5.28 -40.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227227362.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.466 kcal (2) G-P(sol) polarization free energy of solvation -34.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds