Wall clock time and date at job start Mon Mar 30 2020 02:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34951 * 126.03463 * 2 1 4 4 C 1.35320 * 107.74569 * 180.02562 * 3 2 1 5 5 C 1.39866 * 107.91898 * 359.97438 * 4 3 2 6 6 C 1.50696 * 125.89915 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47697 * 125.01620 * 6 5 4 8 8 N 1.46494 * 109.47595 * 179.97438 * 7 6 5 9 9 C 1.36930 * 120.00358 * 179.97438 * 8 7 6 10 10 H 1.08007 * 119.99684 * 0.02562 * 9 8 7 11 11 C 1.38812 * 120.00417 * 179.97438 * 9 8 7 12 12 N 1.31624 * 119.99800 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00218 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47133 * 90.00278 * 13 11 9 15 15 H 1.48504 * 109.47208 * 210.00125 * 13 11 9 16 16 H 1.48505 * 109.47031 * 329.99960 * 13 11 9 17 17 N 1.30844 * 108.20609 * 0.02562 * 5 4 3 18 18 H 1.09005 * 109.46927 * 270.02579 * 1 2 3 19 19 H 1.08994 * 109.47314 * 30.02415 * 1 2 3 20 20 H 1.08998 * 109.46715 * 150.02896 * 1 2 3 21 21 H 1.07996 * 126.12664 * 359.95494 * 3 2 1 22 22 H 1.07993 * 126.03961 * 179.97438 * 4 3 2 23 23 H 1.09002 * 109.47294 * 245.01541 * 6 5 4 24 24 H 1.09000 * 109.47417 * 5.01101 * 6 5 4 25 25 H 1.09002 * 109.46684 * 300.00294 * 7 6 5 26 26 H 1.09001 * 109.46662 * 59.99582 * 7 6 5 27 27 H 0.97007 * 119.99647 * 359.97438 * 8 7 6 28 28 H 0.96997 * 119.99737 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5438 0.6666 -0.0006 5 6 3.5347 -0.7320 -0.0003 6 6 4.7497 -1.6235 -0.0014 7 6 4.6725 -2.5924 1.1802 8 7 5.8533 -3.4594 1.1789 9 6 6.0040 -4.4127 2.1503 10 1 5.2520 -4.5256 2.9173 11 6 7.1226 -5.2346 2.1487 12 7 8.0388 -5.0973 1.2137 13 14 7.3278 -6.5354 3.4735 14 1 6.7020 -7.8044 3.0224 15 1 8.7736 -6.7595 3.7276 16 1 6.6708 -6.0765 4.7238 17 7 2.2892 -1.1327 -0.0002 18 1 -0.3633 0.0005 1.0277 19 1 -0.3633 0.8897 -0.5142 20 1 -0.3633 -0.8902 -0.5134 21 1 1.9281 2.1193 -0.0007 22 1 4.4211 1.2964 -0.0011 23 1 4.7850 -2.1885 -0.9328 24 1 5.6484 -1.0131 0.0875 25 1 4.6372 -2.0273 2.1117 26 1 3.7738 -3.2028 1.0913 27 1 6.5285 -3.3582 0.4898 28 1 8.8206 -5.6714 1.2128 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227227362.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:08 Heat of formation + Delta-G solvation = 60.625529 kcal Electronic energy + Delta-G solvation = -11550.550934 eV Core-core repulsion = 9409.601594 eV Total energy + Delta-G solvation = -2140.949340 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.03928 -37.15775 -34.93627 -33.27653 -31.16275 -30.43898 -27.27280 -25.51886 -23.31888 -21.92084 -20.62155 -19.13336 -17.74691 -16.74032 -16.31991 -15.70168 -15.41743 -15.26481 -14.72095 -14.34737 -13.61791 -13.58731 -13.17792 -12.87430 -12.81928 -12.53338 -12.39616 -12.09933 -11.82386 -11.41064 -10.95738 -10.14935 -9.43633 -9.04166 -7.96564 -5.26913 1.00382 1.46508 1.49559 1.58180 1.75514 1.86529 2.55719 3.36274 3.61702 3.82808 4.13948 4.30921 4.39806 4.41535 4.47213 4.68381 4.71470 4.82506 4.93887 5.09131 5.20169 5.31664 5.46220 5.71813 6.25587 6.26509 6.82566 7.31542 8.04100 8.31486 9.27041 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.078277 B = 0.006285 C = 0.005982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 357.618089 B = 4454.263605 C = 4679.327521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.385 5.385 3 C 0.066 3.934 4 C -0.291 4.291 5 C 0.066 3.934 6 C -0.036 4.036 7 C 0.168 3.832 8 N -0.746 5.746 9 C -0.253 4.253 10 H 0.071 0.929 11 C -0.074 4.074 12 N -0.968 5.968 13 Si 0.979 3.021 14 H -0.285 1.285 15 H -0.290 1.290 16 H -0.270 1.270 17 N -0.340 5.340 18 H 0.083 0.917 19 H 0.124 0.876 20 H 0.082 0.918 21 H 0.222 0.778 22 H 0.163 0.837 23 H 0.073 0.927 24 H 0.093 0.907 25 H 0.013 0.987 26 H 0.011 0.989 27 H 0.377 0.623 28 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.091 14.575 -2.963 20.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.168 5.168 3 C -0.081 4.081 4 C -0.320 4.320 5 C -0.099 4.099 6 C -0.075 4.075 7 C 0.041 3.959 8 N -0.389 5.389 9 C -0.385 4.385 10 H 0.089 0.911 11 C -0.266 4.266 12 N -0.618 5.618 13 Si 0.807 3.193 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.195 1.195 17 N -0.165 5.165 18 H 0.101 0.899 19 H 0.142 0.858 20 H 0.101 0.899 21 H 0.238 0.762 22 H 0.180 0.820 23 H 0.092 0.908 24 H 0.111 0.889 25 H 0.031 0.969 26 H 0.029 0.971 27 H 0.209 0.791 28 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.130 13.499 -2.807 20.470 hybrid contribution 1.055 -0.206 0.349 1.130 sum -14.074 13.294 -2.458 19.515 Atomic orbital electron populations 1.22189 0.72046 1.05944 1.04454 1.48949 1.08008 1.03442 1.56358 1.23205 0.90210 0.94847 0.99802 1.21764 0.98930 0.93347 1.17935 1.22289 0.92815 0.95190 0.99629 1.20016 0.93305 0.95542 0.98648 1.20542 0.88929 0.90827 0.95585 1.42550 1.23332 1.39878 1.33142 1.19624 1.04077 1.09679 1.05095 0.91090 1.25631 0.97010 1.02519 1.01460 1.69822 1.12119 1.42963 1.36922 0.85071 0.76676 0.78842 0.78729 1.21209 1.21579 1.19523 1.77306 1.02306 1.09902 1.26937 0.89886 0.85781 0.89922 0.76162 0.81965 0.90816 0.88894 0.96898 0.97108 0.79080 0.93748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.29 11.47 127.77 1.47 2.76 15 2 N -0.39 -9.53 4.01 -369.56 -1.48 -11.01 15 3 C 0.07 1.35 11.49 83.54 0.96 2.31 15 4 C -0.29 -7.75 10.72 21.99 0.24 -7.51 15 5 C 0.07 2.29 6.49 43.10 0.28 2.57 15 6 C -0.04 -1.35 5.91 29.85 0.18 -1.17 15 7 C 0.17 7.83 6.22 86.38 0.54 8.37 15 8 N -0.75 -41.48 5.60 -343.46 -1.92 -43.40 15 9 C -0.25 -15.20 9.99 84.03 0.84 -14.36 15 10 H 0.07 4.14 7.83 -2.91 -0.02 4.12 15 11 C -0.07 -4.44 5.50 84.86 0.47 -3.97 15 12 N -0.97 -61.15 13.06 21.65 0.28 -60.87 15 13 Si 0.98 47.82 29.55 68.60 2.03 49.85 15 14 H -0.29 -13.64 7.11 99.48 0.71 -12.93 15 15 H -0.29 -13.97 7.11 99.48 0.71 -13.26 15 16 H -0.27 -12.56 7.11 99.48 0.71 -11.85 15 17 N -0.34 -11.99 12.54 -47.39 -0.59 -12.58 15 18 H 0.08 0.98 8.14 -2.38 -0.02 0.96 15 19 H 0.12 0.71 8.14 -2.39 -0.02 0.69 15 20 H 0.08 1.23 8.14 -2.39 -0.02 1.21 15 21 H 0.22 2.02 8.06 -2.91 -0.02 2.00 15 22 H 0.16 3.59 8.06 -2.91 -0.02 3.57 15 23 H 0.07 2.82 8.14 -2.39 -0.02 2.80 15 24 H 0.09 3.24 8.12 -2.39 -0.02 3.22 15 25 H 0.01 0.62 8.14 -2.39 -0.02 0.60 15 26 H 0.01 0.54 8.14 -2.39 -0.02 0.52 15 27 H 0.38 21.61 7.67 -92.70 -0.71 20.89 15 28 H 0.25 15.36 8.31 -92.71 -0.77 14.59 15 Total: -1.00 -75.59 250.78 3.70 -71.88 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.43 Total: 17.14 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 4.96 Total: -11.00 kcal Atomic # 7 Polarization: -124.14 SS G_CDS: -3.72 Total: -127.86 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal Total: -75.59 3.70 -71.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227227362.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.508 kcal (2) G-P(sol) polarization free energy of solvation -75.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds