Wall clock time and date at job start Mon Mar 30 2020 02:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40085 * 126.04294 * 2 1 4 4 C 1.30829 * 108.20742 * 180.02562 * 3 2 1 5 5 C 1.39866 * 108.20769 * 359.78518 * 4 3 2 6 6 C 1.34951 * 126.03573 * 180.02562 * 2 1 3 7 7 C 1.50706 * 126.12666 * 359.93452 * 6 2 1 8 8 C 1.52999 * 109.46953 * 265.00625 * 7 6 2 9 9 N 1.46506 * 109.46684 * 180.02562 * 8 7 6 10 10 C 1.36938 * 119.99589 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00325 * 359.97438 * 10 9 8 12 12 C 1.38815 * 119.99408 * 179.97438 * 10 9 8 13 13 N 1.31617 * 120.00325 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99550 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47228 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47239 * 120.00535 * 14 12 10 17 17 H 1.48501 * 109.46793 * 240.00116 * 14 12 10 18 18 H 1.09005 * 109.46895 * 269.97402 * 1 2 3 19 19 H 1.09000 * 109.46970 * 29.96774 * 1 2 3 20 20 H 1.08993 * 109.47665 * 149.96968 * 1 2 3 21 21 H 1.08008 * 125.89760 * 180.02562 * 4 3 2 22 22 H 1.08002 * 126.04924 * 180.23038 * 5 4 3 23 23 H 1.09000 * 109.46974 * 145.00373 * 7 6 2 24 24 H 1.09001 * 109.46547 * 25.00463 * 7 6 2 25 25 H 1.09000 * 109.47486 * 60.00062 * 8 7 6 26 26 H 1.09001 * 109.47362 * 299.99339 * 8 7 6 27 27 H 0.96995 * 120.00050 * 359.72237 * 9 8 7 28 28 H 0.97000 * 119.99693 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5346 0.7320 -0.0006 5 6 3.5437 -0.6666 0.0041 6 6 2.2589 -1.0913 -0.0005 7 6 1.7972 -2.5259 0.0003 8 6 1.7619 -3.0495 1.4374 9 7 1.3137 -4.4443 1.4380 10 6 1.2029 -5.1273 2.6198 11 1 1.4463 -4.6379 3.5512 12 6 0.7777 -6.4487 2.6203 13 7 0.4816 -7.0453 1.4851 14 14 0.6273 -7.3806 4.2323 15 1 1.0169 -6.4918 5.3562 16 1 -0.7773 -7.8256 4.4177 17 1 1.5222 -8.5654 4.2044 18 1 -0.3633 -0.0005 1.0277 19 1 -0.3633 0.8903 -0.5133 20 1 -0.3634 -0.8896 -0.5143 21 1 4.4055 1.3709 -0.0003 22 1 4.4210 -1.2965 0.0083 23 1 2.4868 -3.1298 -0.5896 24 1 0.7989 -2.5865 -0.4332 25 1 1.0723 -2.4456 2.0273 26 1 2.7601 -2.9889 1.8709 27 1 1.0912 -4.8826 0.6018 28 1 0.1841 -7.9685 1.4857 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230780809.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:11 Heat of formation + Delta-G solvation = 82.851321 kcal Electronic energy + Delta-G solvation = -11747.448825 eV Core-core repulsion = 9607.463267 eV Total energy + Delta-G solvation = -2139.985558 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.01665 -35.34236 -33.20688 -32.36935 -30.33386 -27.45503 -26.56758 -23.90057 -21.63752 -20.93425 -19.47849 -17.24214 -16.28041 -15.36372 -14.64262 -14.44509 -14.03060 -13.41933 -13.31849 -13.16210 -12.59146 -12.26378 -12.04670 -11.24900 -11.09828 -10.87654 -10.76906 -10.42589 -10.07783 -9.76947 -9.05473 -8.91692 -8.29661 -6.97392 -5.80065 -3.09470 2.06385 2.69568 3.02954 3.41915 3.47893 3.50067 4.55057 4.70514 4.87403 5.22429 5.26034 5.36432 5.51073 5.56000 5.76048 5.88262 5.92267 6.06648 6.20990 6.33640 6.72142 6.78591 6.83964 7.20111 7.68251 7.88734 8.38466 9.50007 10.05448 10.40809 11.42855 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.069658 B = 0.006858 C = 0.006726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.867992 B = 4081.773900 C = 4161.667536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.373 5.373 3 N -0.311 5.311 4 C 0.044 3.956 5 C -0.279 4.279 6 C 0.106 3.894 7 C -0.069 4.069 8 C 0.163 3.837 9 N -0.733 5.733 10 C -0.240 4.240 11 H 0.071 0.929 12 C -0.013 4.013 13 N -0.933 5.933 14 Si 0.908 3.092 15 H -0.280 1.280 16 H -0.291 1.291 17 H -0.291 1.291 18 H 0.075 0.925 19 H 0.085 0.915 20 H 0.089 0.911 21 H 0.180 0.820 22 H 0.146 0.854 23 H 0.091 0.909 24 H 0.074 0.926 25 H 0.017 0.983 26 H 0.026 0.974 27 H 0.384 0.616 28 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.234 11.991 -4.051 12.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.156 5.156 3 N -0.132 5.132 4 C -0.142 4.142 5 C -0.308 4.308 6 C -0.023 4.023 7 C -0.108 4.108 8 C 0.034 3.966 9 N -0.378 5.378 10 C -0.371 4.371 11 H 0.089 0.911 12 C -0.209 4.209 13 N -0.582 5.582 14 Si 0.739 3.261 15 H -0.205 1.205 16 H -0.218 1.218 17 H -0.218 1.218 18 H 0.094 0.906 19 H 0.103 0.897 20 H 0.107 0.893 21 H 0.197 0.803 22 H 0.164 0.836 23 H 0.110 0.890 24 H 0.093 0.907 25 H 0.035 0.965 26 H 0.044 0.956 27 H 0.218 0.782 28 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.293 12.977 -3.869 13.603 hybrid contribution 0.353 -1.396 0.609 1.564 sum 1.646 11.581 -3.259 12.143 Atomic orbital electron populations 1.21842 0.74573 1.04165 1.03598 1.48477 1.06475 1.03465 1.57165 1.77270 1.01869 1.08249 1.25814 1.23758 0.95116 0.95143 1.00152 1.21246 0.96483 0.94839 1.18216 1.21191 0.91205 0.90524 0.99342 1.20524 1.02119 0.87669 1.00507 1.20545 0.97498 0.87048 0.91474 1.42346 1.80611 1.07552 1.07276 1.19274 1.37552 0.93831 0.86491 0.91069 1.24748 1.02168 0.97010 0.96983 1.69667 1.51901 1.12428 1.24204 0.86101 0.77289 0.79854 0.82866 1.20507 1.21836 1.21770 0.90641 0.89665 0.89275 0.80328 0.83605 0.89029 0.90730 0.96530 0.95571 0.78230 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.16 11.27 59.84 0.67 1.83 15 2 N -0.37 -5.69 4.01 -63.88 -0.26 -5.94 15 3 N -0.31 -4.91 12.58 30.62 0.39 -4.52 15 4 C 0.04 0.61 12.02 -17.37 -0.21 0.40 15 5 C -0.28 -4.12 10.72 -40.01 -0.43 -4.55 15 6 C 0.11 1.66 6.19 -82.26 -0.51 1.15 15 7 C -0.07 -1.12 5.61 -27.88 -0.16 -1.27 15 8 C 0.16 3.30 6.24 -4.04 -0.03 3.27 15 9 N -0.73 -18.49 5.60 -59.90 -0.34 -18.83 15 10 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 15 11 H 0.07 1.96 7.83 -52.49 -0.41 1.55 15 12 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 15 13 N -0.93 -28.02 13.06 55.49 0.72 -27.30 15 14 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 15 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 16 H -0.29 -7.17 7.11 56.52 0.40 -6.77 15 17 H -0.29 -7.17 7.11 56.52 0.40 -6.77 15 18 H 0.08 0.84 8.14 -51.93 -0.42 0.42 15 19 H 0.08 0.84 8.14 -51.93 -0.42 0.41 15 20 H 0.09 0.93 6.98 -51.93 -0.36 0.57 15 21 H 0.18 1.81 8.06 -52.48 -0.42 1.39 15 22 H 0.15 1.92 8.06 -52.49 -0.42 1.50 15 23 H 0.09 1.45 8.14 -51.93 -0.42 1.02 15 24 H 0.07 1.14 6.95 -51.93 -0.36 0.78 15 25 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 15 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 15 27 H 0.38 10.01 7.67 -40.82 -0.31 9.70 15 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 LS Contribution 248.22 15.07 3.74 3.74 Total: -1.00 -32.25 248.22 -5.21 -37.46 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -3.54 Total: 4.61 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -0.90 Total: -6.54 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 0.52 Total: -56.59 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -32.25 -5.21 -37.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230780809.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.311 kcal (2) G-P(sol) polarization free energy of solvation -32.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds