Wall clock time and date at job start Mon Mar 30 2020 02:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40085 * 126.04294 * 2 1 4 4 C 1.30829 * 108.20742 * 180.02562 * 3 2 1 5 5 C 1.39866 * 108.20769 * 359.78518 * 4 3 2 6 6 C 1.34951 * 126.03573 * 180.02562 * 2 1 3 7 7 C 1.50706 * 126.12666 * 359.93452 * 6 2 1 8 8 C 1.52999 * 109.46953 * 265.00625 * 7 6 2 9 9 N 1.46506 * 109.46684 * 180.02562 * 8 7 6 10 10 C 1.36938 * 119.99589 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00325 * 359.97438 * 10 9 8 12 12 C 1.38815 * 119.99408 * 179.97438 * 10 9 8 13 13 N 1.31617 * 120.00325 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99550 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47228 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47239 * 120.00535 * 14 12 10 17 17 H 1.48501 * 109.46793 * 240.00116 * 14 12 10 18 18 H 1.09005 * 109.46895 * 269.97402 * 1 2 3 19 19 H 1.09000 * 109.46970 * 29.96774 * 1 2 3 20 20 H 1.08993 * 109.47665 * 149.96968 * 1 2 3 21 21 H 1.08008 * 125.89760 * 180.02562 * 4 3 2 22 22 H 1.08002 * 126.04924 * 180.23038 * 5 4 3 23 23 H 1.09000 * 109.46974 * 145.00373 * 7 6 2 24 24 H 1.09001 * 109.46547 * 25.00463 * 7 6 2 25 25 H 1.09000 * 109.47486 * 60.00062 * 8 7 6 26 26 H 1.09001 * 109.47362 * 299.99339 * 8 7 6 27 27 H 0.96995 * 120.00050 * 359.72237 * 9 8 7 28 28 H 0.97000 * 119.99693 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5346 0.7320 -0.0006 5 6 3.5437 -0.6666 0.0041 6 6 2.2589 -1.0913 -0.0005 7 6 1.7972 -2.5259 0.0003 8 6 1.7619 -3.0495 1.4374 9 7 1.3137 -4.4443 1.4380 10 6 1.2029 -5.1273 2.6198 11 1 1.4463 -4.6379 3.5512 12 6 0.7777 -6.4487 2.6203 13 7 0.4816 -7.0453 1.4851 14 14 0.6273 -7.3806 4.2323 15 1 1.0169 -6.4918 5.3562 16 1 -0.7773 -7.8256 4.4177 17 1 1.5222 -8.5654 4.2044 18 1 -0.3633 -0.0005 1.0277 19 1 -0.3633 0.8903 -0.5133 20 1 -0.3634 -0.8896 -0.5143 21 1 4.4055 1.3709 -0.0003 22 1 4.4210 -1.2965 0.0083 23 1 2.4868 -3.1298 -0.5896 24 1 0.7989 -2.5865 -0.4332 25 1 1.0723 -2.4456 2.0273 26 1 2.7601 -2.9889 1.8709 27 1 1.0912 -4.8826 0.6018 28 1 0.1841 -7.9685 1.4857 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230780809.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:11 Heat of formation + Delta-G solvation = 60.977052 kcal Electronic energy + Delta-G solvation = -11748.397364 eV Core-core repulsion = 9607.463267 eV Total energy + Delta-G solvation = -2140.934097 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.14207 -37.11038 -34.58814 -33.84191 -32.05006 -28.97914 -27.56991 -25.80191 -23.34484 -22.02960 -20.68772 -19.20167 -17.54280 -16.77632 -16.30068 -15.74750 -15.42454 -15.26066 -14.83777 -14.49384 -13.63220 -13.51827 -13.20813 -12.96734 -12.84039 -12.68068 -12.35660 -12.06717 -11.83638 -11.57884 -10.97657 -10.20139 -9.44677 -9.04376 -7.97273 -5.27079 0.90118 1.48535 1.48866 1.59217 1.65987 1.92187 2.55309 3.36870 3.54315 3.74105 4.05647 4.25293 4.31916 4.38613 4.41111 4.61242 4.66184 4.78591 4.85398 5.04691 5.15757 5.36067 5.48112 5.78886 6.08908 6.25236 6.77200 7.32089 8.03897 8.29574 9.26157 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.069658 B = 0.006858 C = 0.006726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.867992 B = 4081.773900 C = 4161.667536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.380 5.380 3 N -0.333 5.333 4 C 0.045 3.955 5 C -0.285 4.285 6 C 0.089 3.911 7 C -0.052 4.052 8 C 0.166 3.834 9 N -0.744 5.744 10 C -0.250 4.250 11 H 0.073 0.927 12 C -0.070 4.070 13 N -0.967 5.967 14 Si 0.973 3.027 15 H -0.268 1.268 16 H -0.291 1.291 17 H -0.291 1.291 18 H 0.077 0.923 19 H 0.102 0.898 20 H 0.099 0.901 21 H 0.214 0.786 22 H 0.159 0.841 23 H 0.096 0.904 24 H 0.082 0.918 25 H 0.013 0.987 26 H 0.022 0.978 27 H 0.377 0.623 28 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.608 12.719 -3.705 13.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.163 5.163 3 N -0.155 5.155 4 C -0.140 4.140 5 C -0.314 4.314 6 C -0.040 4.040 7 C -0.091 4.091 8 C 0.039 3.961 9 N -0.387 5.387 10 C -0.381 4.381 11 H 0.091 0.909 12 C -0.263 4.263 13 N -0.617 5.617 14 Si 0.802 3.198 15 H -0.192 1.192 16 H -0.218 1.218 17 H -0.218 1.218 18 H 0.096 0.904 19 H 0.120 0.880 20 H 0.117 0.883 21 H 0.231 0.769 22 H 0.176 0.824 23 H 0.114 0.886 24 H 0.101 0.899 25 H 0.031 0.969 26 H 0.040 0.960 27 H 0.210 0.790 28 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.670 13.745 -3.515 14.286 hybrid contribution 0.266 -1.541 0.490 1.639 sum 1.936 12.204 -3.025 12.722 Atomic orbital electron populations 1.22087 0.73110 1.05558 1.04172 1.48761 1.07519 1.03116 1.56938 1.77240 1.02779 1.08889 1.26621 1.24339 0.95614 0.95278 0.98723 1.21565 0.96648 0.95623 1.17588 1.21143 0.91925 0.90243 1.00686 1.20265 1.02891 0.88204 0.97770 1.20585 0.96623 0.84664 0.94217 1.42508 1.80686 1.09304 1.06228 1.19632 1.36675 0.94297 0.87531 0.90884 1.25550 1.02559 0.98002 1.00187 1.69806 1.53164 1.12546 1.26190 0.85078 0.76912 0.78376 0.79405 1.19232 1.21832 1.21821 0.90439 0.87964 0.88299 0.76949 0.82355 0.88590 0.89917 0.96864 0.95976 0.79039 0.93817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.99 11.27 127.77 1.44 3.43 15 2 N -0.38 -11.04 4.01 -356.03 -1.43 -12.46 15 3 N -0.33 -9.96 12.58 -57.03 -0.72 -10.68 15 4 C 0.05 1.16 12.02 85.24 1.02 2.19 15 5 C -0.29 -7.90 10.72 21.99 0.24 -7.66 15 6 C 0.09 2.66 6.19 41.41 0.26 2.91 15 7 C -0.05 -1.63 5.61 29.85 0.17 -1.47 15 8 C 0.17 6.64 6.24 86.38 0.54 7.17 15 9 N -0.74 -37.37 5.60 -343.44 -1.92 -39.29 15 10 C -0.25 -13.93 9.99 84.03 0.84 -13.09 15 11 H 0.07 3.96 7.83 -2.91 -0.02 3.94 15 12 C -0.07 -4.00 5.50 84.86 0.47 -3.54 15 13 N -0.97 -58.22 13.06 21.65 0.28 -57.94 15 14 Si 0.97 45.66 29.55 68.60 2.03 47.69 15 15 H -0.27 -11.89 7.11 99.48 0.71 -11.18 15 16 H -0.29 -13.58 7.11 99.48 0.71 -12.87 15 17 H -0.29 -13.60 7.11 99.48 0.71 -12.89 15 18 H 0.08 1.65 8.14 -2.38 -0.02 1.63 15 19 H 0.10 1.84 8.14 -2.39 -0.02 1.82 15 20 H 0.10 1.93 6.98 -2.39 -0.02 1.91 15 21 H 0.21 3.66 8.06 -2.91 -0.02 3.63 15 22 H 0.16 3.85 8.06 -2.91 -0.02 3.83 15 23 H 0.10 2.93 8.14 -2.39 -0.02 2.91 15 24 H 0.08 2.45 6.95 -2.39 -0.02 2.43 15 25 H 0.01 0.55 8.14 -2.39 -0.02 0.53 15 26 H 0.02 0.91 8.14 -2.39 -0.02 0.89 15 27 H 0.38 19.74 7.67 -92.71 -0.71 19.03 15 28 H 0.25 14.69 8.31 -92.71 -0.77 13.92 15 Total: -1.00 -66.85 248.22 3.65 -63.20 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.44 Total: 19.52 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 4.97 Total: -10.05 kcal Atomic # 7 Polarization: -116.58 SS G_CDS: -3.79 Total: -120.37 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -66.85 3.65 -63.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230780809.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.177 kcal (2) G-P(sol) polarization free energy of solvation -66.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds