Wall clock time and date at job start Mon Mar 30 2020 02:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46896 * 109.47258 * 2 1 4 4 C 1.46911 * 110.99960 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.46908 * 179.97438 * 4 3 2 6 6 C 1.34640 * 125.86153 * 95.29324 * 5 4 3 7 7 N 1.37293 * 106.83550 * 180.15181 * 6 5 4 8 8 C 1.37556 * 126.51349 * 179.83953 * 7 6 5 9 9 H 1.07995 * 120.00399 * 17.98396 * 8 7 6 10 10 C 1.38945 * 120.00211 * 197.98261 * 8 7 6 11 11 N 1.31337 * 119.99437 * 10.01320 * 10 8 7 12 12 Si 1.86797 * 120.00153 * 190.01186 * 10 8 7 13 13 H 1.48494 * 109.47321 * 265.27362 * 12 10 8 14 14 H 1.48494 * 109.47018 * 25.27693 * 12 10 8 15 15 H 1.48502 * 109.46719 * 145.27471 * 12 10 8 16 16 C 1.36276 * 106.97131 * 359.58125 * 7 6 5 17 17 N 1.30484 * 108.50866 * 0.25959 * 16 7 6 18 18 H 1.09002 * 109.47189 * 299.99730 * 1 2 3 19 19 H 1.08997 * 109.47460 * 59.99495 * 1 2 3 20 20 H 1.08999 * 109.47309 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47089 * 239.99723 * 2 1 3 22 22 H 1.09011 * 109.47302 * 120.00419 * 2 1 3 23 23 H 1.00896 * 111.00440 * 303.95331 * 3 2 1 24 24 H 1.08998 * 109.46981 * 60.00171 * 4 3 2 25 25 H 1.09001 * 109.46717 * 299.99826 * 4 3 2 26 26 H 1.08007 * 126.58401 * 359.97438 * 6 5 4 27 27 H 0.97004 * 119.99605 * 179.97438 * 11 10 8 28 28 H 1.07998 * 125.74238 * 180.26153 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4882 1.4241 -0.0006 5 6 3.9524 2.8578 -0.0012 6 6 4.2916 3.5775 1.0849 7 7 4.6487 4.8259 0.6391 8 6 5.0626 5.8844 1.4140 9 1 5.4093 5.7125 2.4223 10 6 5.0348 7.1748 0.8996 11 7 4.4349 7.4129 -0.2443 12 14 5.8505 8.5709 1.8349 13 1 4.8399 9.2591 2.6776 14 1 6.9271 8.0249 2.6997 15 1 6.4329 9.5387 0.8708 16 6 4.5207 4.8155 -0.7176 17 7 4.1045 3.6347 -1.0853 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5139 0.8900 23 1 1.6442 1.9013 -0.7813 24 1 3.8647 0.9203 -0.8908 25 1 3.8654 0.9200 0.8892 26 1 4.2817 3.2387 2.1105 27 1 4.4152 8.3138 -0.6032 28 1 4.7287 5.6449 -1.3773 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233512098.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:22 Heat of formation + Delta-G solvation = 27.461046 kcal Electronic energy + Delta-G solvation = -11819.566075 eV Core-core repulsion = 9677.178615 eV Total energy + Delta-G solvation = -2142.387460 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.26335 -37.43453 -35.79859 -33.10129 -31.90905 -29.36087 -27.38327 -25.14059 -22.85517 -22.35024 -20.79864 -19.55169 -17.33835 -16.79888 -16.10559 -16.03585 -15.13300 -15.02591 -14.75148 -14.40955 -13.94764 -13.39530 -13.08382 -12.97150 -12.85946 -12.40765 -12.39278 -12.11052 -11.95831 -11.43686 -10.52719 -10.30088 -9.28722 -8.85438 -8.67309 -6.51626 1.28076 1.38536 1.55288 1.79696 2.13376 2.48064 2.97389 3.20494 3.59629 4.11891 4.24212 4.38964 4.49726 4.64544 4.69421 4.79421 4.98953 5.02385 5.10539 5.16295 5.35366 5.43794 5.51209 6.17841 6.27802 6.45937 6.50166 6.77043 7.46391 7.79082 8.36466 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.078970 B = 0.007323 C = 0.007256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.480079 B = 3822.566529 C = 3857.899611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.051 3.949 3 N -0.697 5.697 4 C 0.169 3.831 5 C -0.043 4.043 6 C -0.119 4.119 7 N -0.283 5.283 8 C -0.382 4.382 9 H 0.117 0.883 10 C 0.004 3.996 11 N -0.876 5.876 12 Si 1.022 2.978 13 H -0.264 1.264 14 H -0.254 1.254 15 H -0.268 1.268 16 C 0.129 3.871 17 N -0.550 5.550 18 H 0.054 0.946 19 H 0.048 0.952 20 H 0.080 0.920 21 H 0.031 0.969 22 H 0.078 0.922 23 H 0.336 0.664 24 H 0.030 0.970 25 H 0.088 0.912 26 H 0.166 0.834 27 H 0.288 0.712 28 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.074 -6.493 2.761 7.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.077 4.077 3 N -0.329 5.329 4 C 0.039 3.961 5 C -0.178 4.178 6 C -0.260 4.260 7 N 0.052 4.948 8 C -0.510 4.510 9 H 0.135 0.865 10 C -0.203 4.203 11 N -0.507 5.507 12 Si 0.841 3.159 13 H -0.189 1.189 14 H -0.178 1.178 15 H -0.193 1.193 16 C -0.150 4.150 17 N -0.272 5.272 18 H 0.073 0.927 19 H 0.068 0.932 20 H 0.099 0.901 21 H 0.049 0.951 22 H 0.096 0.904 23 H 0.153 0.847 24 H 0.048 0.952 25 H 0.107 0.893 26 H 0.183 0.817 27 H 0.099 0.901 28 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -2.266 -6.329 2.564 7.195 hybrid contribution 0.563 0.873 0.022 1.039 sum -1.703 -5.456 2.585 6.274 Atomic orbital electron populations 1.21732 0.94033 1.02547 1.01880 1.22023 0.96504 0.88437 1.00763 1.60581 1.07648 1.14377 1.50265 1.19818 0.87323 0.88693 1.00252 1.20543 1.10300 0.97880 0.89040 1.22471 1.15455 0.87946 1.00135 1.41976 1.37206 1.08742 1.06861 1.20465 1.45224 0.85431 0.99854 0.86528 1.26710 0.94708 1.01488 0.97376 1.69930 1.36453 1.24367 1.19974 0.84514 0.78384 0.75303 0.77657 1.18913 1.17776 1.19273 1.24955 1.09603 0.96812 0.83676 1.69921 1.22843 1.03043 1.31395 0.92693 0.93247 0.90141 0.95105 0.90388 0.84743 0.95200 0.89346 0.81659 0.90120 0.79352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 10.17 71.98 0.73 -2.41 15 2 C 0.05 1.32 6.40 86.30 0.55 1.87 15 3 N -0.70 -24.00 6.49 -517.92 -3.36 -27.36 15 4 C 0.17 6.32 6.22 85.55 0.53 6.85 15 5 C -0.04 -2.09 6.59 41.36 0.27 -1.82 15 6 C -0.12 -5.99 11.41 83.01 0.95 -5.04 15 7 N -0.28 -15.74 2.92 -353.64 -1.03 -16.78 15 8 C -0.38 -20.39 10.15 83.96 0.85 -19.54 15 9 H 0.12 5.77 7.85 -2.91 -0.02 5.75 15 10 C 0.00 0.19 5.39 84.94 0.46 0.65 15 11 N -0.88 -46.57 10.84 21.66 0.23 -46.33 15 12 Si 1.02 38.07 29.56 68.60 2.03 40.09 15 13 H -0.26 -9.50 7.11 99.48 0.71 -8.79 15 14 H -0.25 -9.00 7.11 99.48 0.71 -8.29 15 15 H -0.27 -9.62 7.11 99.48 0.71 -8.91 15 16 C 0.13 7.33 11.27 179.87 2.03 9.36 15 17 N -0.55 -29.74 11.24 -187.35 -2.11 -31.85 15 18 H 0.05 1.28 8.14 -2.39 -0.02 1.26 15 19 H 0.05 1.09 8.14 -2.39 -0.02 1.07 15 20 H 0.08 1.34 8.14 -2.39 -0.02 1.32 15 21 H 0.03 0.75 8.14 -2.39 -0.02 0.73 15 22 H 0.08 1.83 8.14 -2.38 -0.02 1.81 15 23 H 0.34 12.39 8.72 -89.70 -0.78 11.61 15 24 H 0.03 1.10 8.14 -2.39 -0.02 1.08 15 25 H 0.09 2.92 8.14 -2.39 -0.02 2.91 15 26 H 0.17 7.30 8.06 -2.91 -0.02 7.27 15 27 H 0.29 13.95 8.31 -92.71 -0.77 13.18 15 28 H 0.19 10.96 6.33 -2.91 -0.02 10.94 15 Total: -1.00 -61.88 246.24 2.50 -59.38 By element: Atomic # 1 Polarization: 32.56 SS G_CDS: 0.37 Total: 32.93 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: 6.37 Total: -10.08 kcal Atomic # 7 Polarization: -116.05 SS G_CDS: -6.27 Total: -122.32 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.09 kcal Total: -61.88 2.50 -59.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233512098.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.841 kcal (2) G-P(sol) polarization free energy of solvation -61.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds