Wall clock time and date at job start Mon Mar 30 2020 02:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46735 * 2 1 4 4 N 1.46898 * 109.47359 * 120.00039 * 2 1 3 5 5 C 1.53005 * 109.47184 * 240.00700 * 2 1 3 6 6 C 1.50697 * 109.47019 * 174.99839 * 5 2 1 7 7 C 1.34640 * 125.86153 * 125.28941 * 6 5 2 8 8 N 1.37293 * 106.83550 * 180.15181 * 7 6 5 9 9 C 1.37556 * 126.51349 * 179.83953 * 8 7 6 10 10 H 1.07995 * 120.00399 * 17.98396 * 9 8 7 11 11 C 1.38945 * 120.00211 * 197.98261 * 9 8 7 12 12 N 1.31337 * 119.99437 * 10.01320 * 11 9 8 13 13 Si 1.86797 * 120.00153 * 190.01186 * 11 9 8 14 14 H 1.48494 * 109.47321 * 265.27362 * 13 11 9 15 15 H 1.48494 * 109.47018 * 25.27693 * 13 11 9 16 16 H 1.48502 * 109.46719 * 145.27471 * 13 11 9 17 17 C 1.36276 * 106.97131 * 359.58125 * 8 7 6 18 18 N 1.30484 * 108.50866 * 0.25959 * 17 8 7 19 19 H 1.08997 * 109.47702 * 59.99834 * 1 2 3 20 20 H 1.08997 * 109.47179 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47331 * 299.99512 * 1 2 3 22 22 H 1.00899 * 111.00006 * 176.04225 * 4 2 1 23 23 H 1.00899 * 111.00379 * 300.00028 * 4 2 1 24 24 H 1.09001 * 109.47114 * 54.99376 * 5 2 1 25 25 H 1.08999 * 109.46783 * 294.99583 * 5 2 1 26 26 H 1.08007 * 126.58401 * 359.97438 * 7 6 5 27 27 H 0.97004 * 119.99605 * 179.97438 * 12 11 9 28 28 H 1.07998 * 125.74238 * 180.26153 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0400 -0.7211 -1.2494 6 6 3.5419 -0.6147 -1.3128 7 6 4.4019 -1.6454 -1.4166 8 7 5.6653 -1.1084 -1.4388 9 6 6.8486 -1.8035 -1.5326 10 1 6.8487 -2.8245 -1.8844 11 6 8.0438 -1.1920 -1.1748 12 7 8.0294 -0.0287 -0.5652 13 14 9.6710 -2.0243 -1.5607 14 1 10.1204 -2.8043 -0.3798 15 1 9.4978 -2.9364 -2.7197 16 1 10.6883 -0.9937 -1.8896 17 6 5.5239 0.2445 -1.3561 18 7 4.2516 0.5243 -1.2816 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 3.0262 -0.7626 1.1908 23 1 1.6962 -0.2350 2.0385 24 1 1.6053 -0.2616 -2.1370 25 1 1.7517 -1.7714 -1.2057 26 1 4.1471 -2.6936 -1.4692 27 1 8.8639 0.3981 -0.3151 28 1 6.3294 0.9639 -1.3529 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235226193.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:00 Heat of formation + Delta-G solvation = 38.068971 kcal Electronic energy + Delta-G solvation = -12079.223453 eV Core-core repulsion = 9937.295986 eV Total energy + Delta-G solvation = -2141.927466 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.32323 -36.02445 -33.83222 -31.00214 -29.42592 -28.38494 -26.04464 -24.38435 -20.55974 -19.96802 -18.78658 -17.46643 -15.37450 -15.24702 -15.00413 -14.45005 -13.41818 -13.33829 -12.71154 -12.47976 -12.07823 -11.59003 -11.53234 -11.39830 -11.23155 -10.99241 -10.78281 -10.63130 -10.40294 -9.52299 -8.47664 -8.28475 -8.09510 -6.89373 -6.74687 -4.49642 2.90847 3.01186 3.06321 3.66484 3.81778 4.51784 4.94466 5.07993 5.15029 5.52769 5.60196 5.91322 6.06734 6.22163 6.33361 6.38762 6.54064 6.61776 6.78325 6.99659 7.06682 7.36884 7.47568 7.74000 8.00351 8.21430 8.46162 8.72672 9.47737 9.80379 10.24324 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.084488 B = 0.008303 C = 0.008200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 331.330136 B = 3371.596680 C = 3413.625237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.094 3.906 3 H 0.040 0.960 4 N -0.845 5.845 5 C -0.011 4.011 6 C -0.043 4.043 7 C -0.114 4.114 8 N -0.271 5.271 9 C -0.345 4.345 10 H 0.106 0.894 11 C 0.046 3.954 12 N -0.846 5.846 13 Si 0.942 3.058 14 H -0.272 1.272 15 H -0.264 1.264 16 H -0.275 1.275 17 C 0.156 3.844 18 N -0.537 5.537 19 H 0.054 0.946 20 H 0.058 0.942 21 H 0.045 0.955 22 H 0.349 0.651 23 H 0.327 0.673 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.142 0.858 27 H 0.281 0.719 28 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.927 -1.265 0.427 5.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.018 4.018 3 H 0.058 0.942 4 N -0.375 5.375 5 C -0.050 4.050 6 C -0.177 4.177 7 C -0.254 4.254 8 N 0.064 4.936 9 C -0.474 4.474 10 H 0.124 0.876 11 C -0.163 4.163 12 N -0.477 5.477 13 Si 0.767 3.233 14 H -0.197 1.197 15 H -0.188 1.188 16 H -0.200 1.200 17 C -0.124 4.124 18 N -0.258 5.258 19 H 0.073 0.927 20 H 0.077 0.923 21 H 0.065 0.935 22 H 0.163 0.837 23 H 0.137 0.863 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.160 0.840 27 H 0.091 0.909 28 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -5.303 -1.008 0.279 5.405 hybrid contribution 1.789 -0.308 0.106 1.818 sum -3.514 -1.316 0.384 3.771 Atomic orbital electron populations 1.21831 0.95759 1.01751 1.00754 1.21221 0.93454 0.96082 0.91011 0.94173 1.58844 1.17581 1.57569 1.03535 1.19637 0.89913 0.99760 0.95713 1.19984 0.94399 0.89782 1.13514 1.21980 0.85072 0.98317 1.20058 1.41696 1.04547 1.06588 1.40737 1.19926 0.82422 0.99259 1.45776 0.87644 1.25546 1.00757 0.96186 0.93841 1.69832 1.29360 1.15590 1.32964 0.85670 0.79421 0.78945 0.79300 1.19705 1.18819 1.20003 1.25095 0.93892 0.84320 1.09084 1.69944 1.02929 1.28548 1.24345 0.92663 0.92327 0.93545 0.83666 0.86268 0.92329 0.91630 0.83995 0.90857 0.78335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.49 37.16 0.35 -1.63 15 2 C 0.09 1.63 3.42 -67.71 -0.23 1.40 15 3 H 0.04 0.78 8.10 -51.93 -0.42 0.36 15 4 N -0.85 -14.62 9.25 -4.67 -0.04 -14.66 15 5 C -0.01 -0.22 5.46 -27.88 -0.15 -0.37 15 6 C -0.04 -1.01 5.38 -82.81 -0.45 -1.46 15 7 C -0.11 -2.80 11.39 -16.38 -0.19 -2.99 15 8 N -0.27 -7.29 2.92 -63.13 -0.18 -7.48 15 9 C -0.34 -9.07 10.15 -14.72 -0.15 -9.22 15 10 H 0.11 2.61 7.85 -52.49 -0.41 2.20 15 11 C 0.05 1.15 5.39 -17.50 -0.09 1.06 15 12 N -0.85 -22.00 10.84 55.49 0.60 -21.40 15 13 Si 0.94 18.87 29.56 -169.99 -5.03 13.84 15 14 H -0.27 -5.38 7.11 56.52 0.40 -4.97 15 15 H -0.26 -5.18 7.11 56.52 0.40 -4.78 15 16 H -0.28 -5.42 7.11 56.52 0.40 -5.02 15 17 C 0.16 4.25 11.27 -89.25 -1.01 3.24 15 18 N -0.54 -13.92 11.18 -10.57 -0.12 -14.04 15 19 H 0.05 0.70 8.14 -51.93 -0.42 0.28 15 20 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.05 0.58 8.14 -51.93 -0.42 0.16 15 22 H 0.35 6.96 8.07 -39.29 -0.32 6.65 15 23 H 0.33 4.88 9.04 -39.29 -0.36 4.52 15 24 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 25 H 0.07 1.18 8.11 -51.93 -0.42 0.76 15 26 H 0.14 3.15 8.06 -52.48 -0.42 2.73 15 27 H 0.28 6.71 8.31 -40.82 -0.34 6.37 15 28 H 0.20 5.48 6.33 -52.49 -0.33 5.15 15 LS Contribution 243.42 15.07 3.67 3.67 Total: -1.00 -28.09 243.42 -6.52 -34.61 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -3.51 Total: 15.42 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -1.91 Total: -9.96 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 0.26 Total: -57.58 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -28.09 -6.52 -34.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235226193.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.682 kcal (2) G-P(sol) polarization free energy of solvation -28.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds