Wall clock time and date at job start Mon Mar 30 2020 02:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46735 * 2 1 4 4 N 1.46898 * 109.47359 * 120.00039 * 2 1 3 5 5 C 1.53005 * 109.47184 * 240.00700 * 2 1 3 6 6 C 1.50697 * 109.47019 * 174.99839 * 5 2 1 7 7 C 1.34640 * 125.86153 * 125.28941 * 6 5 2 8 8 N 1.37293 * 106.83550 * 180.15181 * 7 6 5 9 9 C 1.37556 * 126.51349 * 179.83953 * 8 7 6 10 10 H 1.07995 * 120.00399 * 17.98396 * 9 8 7 11 11 C 1.38945 * 120.00211 * 197.98261 * 9 8 7 12 12 N 1.31337 * 119.99437 * 10.01320 * 11 9 8 13 13 Si 1.86797 * 120.00153 * 190.01186 * 11 9 8 14 14 H 1.48494 * 109.47321 * 265.27362 * 13 11 9 15 15 H 1.48494 * 109.47018 * 25.27693 * 13 11 9 16 16 H 1.48502 * 109.46719 * 145.27471 * 13 11 9 17 17 C 1.36276 * 106.97131 * 359.58125 * 8 7 6 18 18 N 1.30484 * 108.50866 * 0.25959 * 17 8 7 19 19 H 1.08997 * 109.47702 * 59.99834 * 1 2 3 20 20 H 1.08997 * 109.47179 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47331 * 299.99512 * 1 2 3 22 22 H 1.00899 * 111.00006 * 176.04225 * 4 2 1 23 23 H 1.00899 * 111.00379 * 300.00028 * 4 2 1 24 24 H 1.09001 * 109.47114 * 54.99376 * 5 2 1 25 25 H 1.08999 * 109.46783 * 294.99583 * 5 2 1 26 26 H 1.08007 * 126.58401 * 359.97438 * 7 6 5 27 27 H 0.97004 * 119.99605 * 179.97438 * 12 11 9 28 28 H 1.07998 * 125.74238 * 180.26153 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0400 -0.7211 -1.2494 6 6 3.5419 -0.6147 -1.3128 7 6 4.4019 -1.6454 -1.4166 8 7 5.6653 -1.1084 -1.4388 9 6 6.8486 -1.8035 -1.5326 10 1 6.8487 -2.8245 -1.8844 11 6 8.0438 -1.1920 -1.1748 12 7 8.0294 -0.0287 -0.5652 13 14 9.6710 -2.0243 -1.5607 14 1 10.1204 -2.8043 -0.3798 15 1 9.4978 -2.9364 -2.7197 16 1 10.6883 -0.9937 -1.8896 17 6 5.5239 0.2445 -1.3561 18 7 4.2516 0.5243 -1.2816 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 3.0262 -0.7626 1.1908 23 1 1.6962 -0.2350 2.0385 24 1 1.6053 -0.2616 -2.1370 25 1 1.7517 -1.7714 -1.2057 26 1 4.1471 -2.6936 -1.4692 27 1 8.8639 0.3981 -0.3151 28 1 6.3294 0.9639 -1.3529 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235226193.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:59 Heat of formation + Delta-G solvation = 20.167633 kcal Electronic energy + Delta-G solvation = -12079.999713 eV Core-core repulsion = 9937.295986 eV Total energy + Delta-G solvation = -2142.703726 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.27771 -37.48617 -35.71513 -32.94813 -31.11113 -29.76982 -27.85415 -26.17988 -22.45256 -21.54953 -20.67878 -19.32925 -17.33548 -16.69436 -16.40772 -16.10742 -15.33277 -14.88192 -14.54025 -14.34928 -13.70642 -13.15004 -13.03073 -12.94964 -12.73868 -12.61211 -12.26407 -12.13269 -11.92224 -11.35068 -10.44480 -10.25414 -9.53318 -8.81388 -8.66819 -6.51298 1.27717 1.37674 1.53937 1.81542 2.12481 2.58515 2.97152 3.22593 3.71497 4.09043 4.21522 4.45235 4.61315 4.77283 4.83507 4.98895 5.07343 5.08408 5.11641 5.22569 5.44027 5.51082 5.54851 6.27544 6.28578 6.48974 6.66001 6.77688 7.47620 7.81889 8.35563 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.084488 B = 0.008303 C = 0.008200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 331.330136 B = 3371.596680 C = 3413.625237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.096 3.904 3 H 0.015 0.985 4 N -0.842 5.842 5 C -0.011 4.011 6 C -0.036 4.036 7 C -0.134 4.134 8 N -0.280 5.280 9 C -0.381 4.381 10 H 0.115 0.885 11 C 0.006 3.994 12 N -0.876 5.876 13 Si 1.020 2.980 14 H -0.264 1.264 15 H -0.255 1.255 16 H -0.269 1.269 17 C 0.126 3.874 18 N -0.549 5.549 19 H 0.068 0.932 20 H 0.065 0.935 21 H 0.060 0.940 22 H 0.332 0.668 23 H 0.340 0.660 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.163 0.837 27 H 0.288 0.712 28 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.313 -2.226 0.354 5.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.016 4.016 3 H 0.034 0.966 4 N -0.372 5.372 5 C -0.050 4.050 6 C -0.170 4.170 7 C -0.274 4.274 8 N 0.055 4.945 9 C -0.509 4.509 10 H 0.133 0.867 11 C -0.201 4.201 12 N -0.507 5.507 13 Si 0.840 3.160 14 H -0.189 1.189 15 H -0.179 1.179 16 H -0.193 1.193 17 C -0.153 4.153 18 N -0.271 5.271 19 H 0.087 0.913 20 H 0.084 0.916 21 H 0.079 0.921 22 H 0.144 0.856 23 H 0.152 0.848 24 H 0.089 0.911 25 H 0.098 0.902 26 H 0.180 0.820 27 H 0.098 0.902 28 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -5.727 -1.960 0.215 6.057 hybrid contribution 1.859 0.013 0.159 1.866 sum -3.868 -1.947 0.374 4.346 Atomic orbital electron populations 1.21751 0.92511 1.02681 1.02211 1.21218 0.95917 0.94266 0.90211 0.96648 1.58885 1.16160 1.57754 1.04369 1.19795 0.86845 1.01118 0.97207 1.20672 0.96441 0.88617 1.11266 1.22515 0.84691 0.99688 1.20485 1.41918 1.05496 1.06555 1.40576 1.20440 0.83059 1.00107 1.47332 0.86725 1.26658 1.04178 0.96602 0.92672 1.69928 1.30785 1.16911 1.33109 0.84542 0.74142 0.77968 0.79397 1.18887 1.17900 1.19338 1.24950 0.94244 0.84730 1.11369 1.69940 1.02702 1.29693 1.24738 0.91325 0.91585 0.92097 0.85638 0.84762 0.91095 0.90187 0.81982 0.90187 0.79629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 9.49 71.98 0.68 -2.63 15 2 C 0.10 3.17 3.42 44.92 0.15 3.32 15 3 H 0.02 0.59 8.10 -2.38 -0.02 0.57 15 4 N -0.84 -28.10 9.25 -168.67 -1.56 -29.66 15 5 C -0.01 -0.40 5.46 29.85 0.16 -0.24 15 6 C -0.04 -1.67 5.38 41.36 0.22 -1.44 15 7 C -0.13 -6.61 11.39 83.01 0.95 -5.66 15 8 N -0.28 -15.33 2.92 -353.64 -1.03 -16.36 15 9 C -0.38 -20.19 10.15 83.96 0.85 -19.33 15 10 H 0.12 5.66 7.85 -2.91 -0.02 5.63 15 11 C 0.01 0.28 5.39 84.94 0.46 0.73 15 12 N -0.88 -46.13 10.84 21.66 0.23 -45.89 15 13 Si 1.02 37.92 29.56 68.60 2.03 39.95 15 14 H -0.26 -9.46 7.11 99.48 0.71 -8.76 15 15 H -0.26 -9.07 7.11 99.48 0.71 -8.37 15 16 H -0.27 -9.65 7.11 99.48 0.71 -8.94 15 17 C 0.13 7.06 11.27 179.87 2.03 9.09 15 18 N -0.55 -28.94 11.18 -187.35 -2.10 -31.04 15 19 H 0.07 1.52 8.14 -2.39 -0.02 1.50 15 20 H 0.07 1.56 8.14 -2.39 -0.02 1.54 15 21 H 0.06 1.34 8.14 -2.39 -0.02 1.32 15 22 H 0.33 13.16 8.07 -89.69 -0.72 12.44 15 23 H 0.34 9.67 9.04 -89.69 -0.81 8.86 15 24 H 0.07 2.42 8.14 -2.39 -0.02 2.41 15 25 H 0.08 2.69 8.11 -2.39 -0.02 2.67 15 26 H 0.16 7.08 8.06 -2.91 -0.02 7.05 15 27 H 0.29 13.83 8.31 -92.71 -0.77 13.06 15 28 H 0.19 10.71 6.33 -2.91 -0.02 10.69 15 Total: -1.00 -60.19 243.42 2.71 -57.48 By element: Atomic # 1 Polarization: 42.04 SS G_CDS: -0.36 Total: 41.68 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: 5.50 Total: -16.16 kcal Atomic # 7 Polarization: -118.50 SS G_CDS: -4.45 Total: -122.95 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.95 kcal Total: -60.19 2.71 -57.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235226193.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.650 kcal (2) G-P(sol) polarization free energy of solvation -60.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds