Wall clock time and date at job start Mon Mar 30 2020 02:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47035 * 2 1 4 4 N 1.46892 * 109.47487 * 240.00070 * 2 1 3 5 5 C 1.52998 * 109.47539 * 119.99553 * 2 1 3 6 6 C 1.50699 * 109.47460 * 185.00359 * 5 2 1 7 7 C 1.34637 * 125.86065 * 125.29381 * 6 5 2 8 8 N 1.37297 * 106.83070 * 180.15247 * 7 6 5 9 9 C 1.37564 * 126.51127 * 179.84074 * 8 7 6 10 10 H 1.07998 * 120.00139 * 20.91135 * 9 8 7 11 11 C 1.38931 * 119.99804 * 200.91832 * 9 8 7 12 12 N 1.31336 * 119.99761 * 196.15912 * 11 9 8 13 13 Si 1.86801 * 120.00233 * 16.15826 * 11 9 8 14 14 H 1.48497 * 109.47241 * 270.00094 * 13 11 9 15 15 H 1.48496 * 109.47102 * 30.00427 * 13 11 9 16 16 H 1.48502 * 109.47125 * 149.99963 * 13 11 9 17 17 C 1.36265 * 106.97398 * 359.58137 * 8 7 6 18 18 N 1.30483 * 108.51508 * 0.26029 * 17 8 7 19 19 H 1.08999 * 109.46672 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.46881 * 299.99582 * 1 2 3 21 21 H 1.08996 * 109.47112 * 60.00445 * 1 2 3 22 22 H 1.00908 * 111.00358 * 59.99734 * 4 2 1 23 23 H 1.00899 * 111.00610 * 183.94944 * 4 2 1 24 24 H 1.09004 * 109.46681 * 64.99926 * 5 2 1 25 25 H 1.09003 * 109.46926 * 305.00902 * 5 2 1 26 26 H 1.08005 * 126.58452 * 359.97438 * 7 6 5 27 27 H 0.96997 * 120.00405 * 354.91797 * 12 11 9 28 28 H 1.08005 * 125.74407 * 180.26142 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6924 -1.1993 5 6 2.0401 -0.7211 1.2492 6 6 3.5420 -0.6147 1.3127 7 6 4.2556 -0.1345 2.3485 8 7 5.5787 -0.2138 1.9905 9 6 6.6572 0.1731 2.7518 10 1 6.5573 0.2632 3.8234 11 6 7.8749 0.4480 2.1421 12 7 8.9718 0.5049 2.8622 13 14 7.9522 0.7368 0.2982 14 1 8.1787 -0.5561 -0.3963 15 1 6.6714 1.3293 -0.1642 16 1 9.0678 1.6669 -0.0109 17 6 5.6208 -0.7539 0.7402 18 7 4.3983 -0.9880 0.3486 19 1 -0.3632 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 1.6962 -0.2349 -2.0386 23 1 3.0263 -0.7625 -1.1909 24 1 1.7517 -1.7714 1.2056 25 1 1.6054 -0.2616 2.1370 26 1 3.8625 0.2435 3.2808 27 1 8.9225 0.4284 3.8279 28 1 6.5155 -0.9545 0.1694 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235538289.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:03 Heat of formation + Delta-G solvation = 24.805904 kcal Electronic energy + Delta-G solvation = -12175.567903 eV Core-core repulsion = 10033.065307 eV Total energy + Delta-G solvation = -2142.502596 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.67175 -37.54336 -35.86283 -33.37295 -31.45535 -29.70205 -27.98748 -25.81714 -22.93133 -21.64817 -21.04960 -19.73835 -18.00719 -16.58424 -16.53153 -16.01512 -15.76088 -15.25129 -14.74183 -14.64369 -14.12352 -13.36774 -13.07208 -12.69094 -12.47423 -12.36306 -12.25607 -12.03093 -11.76531 -11.39460 -10.67511 -10.50545 -9.45983 -9.39100 -9.05303 -6.73866 1.13779 1.30640 1.50430 1.60602 2.03940 2.29318 2.63312 2.84594 3.68623 3.93479 4.16142 4.24393 4.45324 4.54109 4.68940 4.78527 5.01793 5.08552 5.16251 5.17782 5.27262 5.39748 5.46830 5.99932 6.17324 6.43891 6.53708 6.88249 7.14704 7.45327 7.99352 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.064411 B = 0.010187 C = 0.009250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.604150 B = 2747.832283 C = 3026.336008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.094 3.906 3 H 0.013 0.987 4 N -0.857 5.857 5 C -0.016 4.016 6 C -0.030 4.030 7 C -0.118 4.118 8 N -0.283 5.283 9 C -0.438 4.438 10 H 0.086 0.914 11 C 0.004 3.996 12 N -0.857 5.857 13 Si 1.092 2.908 14 H -0.248 1.248 15 H -0.272 1.272 16 H -0.271 1.271 17 C 0.062 3.938 18 N -0.507 5.507 19 H 0.061 0.939 20 H 0.071 0.929 21 H 0.060 0.940 22 H 0.335 0.665 23 H 0.354 0.646 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.169 0.831 27 H 0.278 0.722 28 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.479 1.002 -4.734 11.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.017 4.017 3 H 0.031 0.969 4 N -0.392 5.392 5 C -0.054 4.054 6 C -0.165 4.165 7 C -0.258 4.258 8 N 0.051 4.949 9 C -0.567 4.567 10 H 0.104 0.896 11 C -0.205 4.205 12 N -0.485 5.485 13 Si 0.913 3.087 14 H -0.173 1.173 15 H -0.197 1.197 16 H -0.197 1.197 17 C -0.214 4.214 18 N -0.229 5.229 19 H 0.080 0.920 20 H 0.090 0.910 21 H 0.079 0.921 22 H 0.147 0.853 23 H 0.173 0.827 24 H 0.088 0.912 25 H 0.110 0.890 26 H 0.186 0.814 27 H 0.089 0.911 28 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -9.785 0.362 -6.289 11.637 hybrid contribution 0.283 0.975 2.542 2.737 sum -9.502 1.336 -3.747 10.301 Atomic orbital electron populations 1.21768 0.92635 1.02547 1.02323 1.21217 0.96008 0.93848 0.90677 0.96867 1.58961 1.19143 1.57385 1.03712 1.19907 0.86085 1.01219 0.98225 1.20869 0.96745 1.07272 0.91664 1.22679 0.83384 1.16104 1.03659 1.42009 1.05831 1.34900 1.12204 1.20984 0.90274 1.52600 0.92856 0.89626 1.27656 0.89565 0.91638 1.11647 1.70842 1.27840 1.40539 1.09299 0.83397 0.77042 0.79248 0.68994 1.17331 1.19721 1.19658 1.24821 0.98082 1.09863 0.88603 1.69572 0.98942 1.23870 1.30503 0.91980 0.91020 0.92132 0.85331 0.82721 0.91170 0.89023 0.81361 0.91125 0.79283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.49 71.98 0.68 -2.32 15 2 C 0.09 2.83 3.42 44.92 0.15 2.99 15 3 H 0.01 0.43 8.14 -2.39 -0.02 0.42 15 4 N -0.86 -27.33 9.24 -168.69 -1.56 -28.88 15 5 C -0.02 -0.52 5.46 29.85 0.16 -0.35 15 6 C -0.03 -1.30 6.30 41.36 0.26 -1.04 15 7 C -0.12 -5.40 11.39 83.01 0.95 -4.45 15 8 N -0.28 -14.42 2.77 -353.65 -0.98 -15.40 15 9 C -0.44 -23.72 10.43 83.96 0.88 -22.85 15 10 H 0.09 4.81 8.06 -2.91 -0.02 4.78 15 11 C 0.00 0.24 5.47 84.93 0.46 0.70 15 12 N -0.86 -46.55 13.69 21.65 0.30 -46.25 15 13 Si 1.09 47.19 25.04 68.60 1.72 48.91 15 14 H -0.25 -9.70 6.59 99.48 0.66 -9.04 15 15 H -0.27 -11.95 6.73 99.48 0.67 -11.28 15 16 H -0.27 -11.18 7.11 99.48 0.71 -10.48 15 17 C 0.06 3.02 9.70 179.87 1.74 4.76 15 18 N -0.51 -23.39 8.81 -187.35 -1.65 -25.04 15 19 H 0.06 1.38 8.14 -2.39 -0.02 1.36 15 20 H 0.07 1.35 8.14 -2.39 -0.02 1.33 15 21 H 0.06 1.20 8.14 -2.39 -0.02 1.18 15 22 H 0.33 8.98 9.04 -89.69 -0.81 8.17 15 23 H 0.35 13.16 6.22 -89.69 -0.56 12.60 15 24 H 0.07 2.33 8.14 -2.38 -0.02 2.31 15 25 H 0.09 2.53 8.11 -2.39 -0.02 2.51 15 26 H 0.17 6.76 8.06 -2.91 -0.02 6.73 15 27 H 0.28 14.88 8.73 -92.71 -0.81 14.08 15 28 H 0.19 8.65 4.25 -2.91 -0.01 8.64 15 Total: -1.00 -58.71 234.80 2.79 -55.92 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: -0.32 Total: 33.31 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: 5.29 Total: -22.56 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -3.90 Total: -115.58 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 1.72 Total: 48.91 kcal Total: -58.71 2.79 -55.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235538289.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.726 kcal (2) G-P(sol) polarization free energy of solvation -58.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds