Wall clock time and date at job start Mon Mar 30 2020 02:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99947 * 2 1 4 4 H 1.48504 * 109.47066 * 269.99549 * 3 2 1 5 5 H 1.48500 * 109.47357 * 29.99685 * 3 2 1 6 6 H 1.48501 * 109.47220 * 149.99834 * 3 2 1 7 7 C 1.37878 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99593 * 175.57955 * 7 2 1 9 9 C 1.50694 * 120.00046 * 355.58508 * 7 2 1 10 10 C 1.52996 * 109.52503 * 65.70776 * 9 7 2 11 11 C 1.53001 * 117.49743 * 67.08524 * 10 9 7 12 12 C 1.53002 * 60.03301 * 252.47502 * 11 10 9 13 13 C 1.53120 * 109.52026 * 185.83427 * 9 7 2 14 14 C 1.53046 * 109.27727 * 62.37683 * 13 9 7 15 15 N 1.46850 * 109.57421 * 59.08302 * 14 13 9 16 16 C 1.46851 * 111.19562 * 298.29075 * 15 14 13 17 17 C 1.53036 * 109.52287 * 61.74210 * 16 15 14 18 18 H 0.97000 * 119.99807 * 0.02562 * 1 2 3 19 19 H 1.09002 * 115.55389 * 212.75434 * 10 9 7 20 20 H 1.08993 * 117.50033 * 359.97438 * 11 10 9 21 21 H 1.08999 * 117.49922 * 144.97762 * 11 10 9 22 22 H 1.09000 * 117.49930 * 107.49720 * 12 11 10 23 23 H 1.08995 * 117.50314 * 252.52333 * 12 11 10 24 24 H 1.09008 * 109.50355 * 182.25333 * 13 9 7 25 25 H 1.09001 * 109.50614 * 302.37036 * 13 9 7 26 26 H 1.08999 * 109.40653 * 299.06942 * 14 13 9 27 27 H 1.08994 * 109.45438 * 179.12291 * 14 13 9 28 28 H 1.00900 * 110.99780 * 174.19664 * 15 14 13 29 29 H 1.09000 * 109.46160 * 301.72360 * 16 15 14 30 30 H 1.09003 * 109.45943 * 181.76154 * 16 15 14 31 31 H 1.09003 * 109.49988 * 180.87544 * 17 16 15 32 32 H 1.09005 * 109.53185 * 60.78513 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0821 -1.1955 -0.0716 9 6 1.2543 -2.4971 0.1016 10 6 0.3992 -2.6934 -1.1518 11 6 1.1297 -2.9138 -2.4780 12 6 0.4239 -1.5838 -2.2061 13 6 2.2509 -3.6528 0.2272 14 6 3.0605 -3.4841 1.5150 15 7 2.1520 -3.4682 2.6687 16 6 1.2174 -2.3381 2.5930 17 6 0.3518 -2.4734 1.3382 18 1 -0.4850 0.8401 -0.0004 19 1 -0.5413 -3.2235 -1.0011 20 1 2.2194 -2.9186 -2.4576 21 1 0.6700 -3.5892 -3.1996 22 1 1.0493 -0.7137 -2.0068 23 1 -0.5003 -1.3844 -2.7485 24 1 1.7095 -4.5983 0.2600 25 1 2.9240 -3.6478 -0.6302 26 1 3.6132 -2.5455 1.4750 27 1 3.7602 -4.3138 1.6152 28 1 2.6685 -3.4529 3.5354 29 1 1.7789 -1.4049 2.5480 30 1 0.5787 -2.3352 3.4763 31 1 -0.3311 -1.6262 1.2742 32 1 -0.2209 -3.3995 1.3887 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238543330.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:45 Heat of formation + Delta-G solvation = 25.168040 kcal Electronic energy + Delta-G solvation = -13375.683652 eV Core-core repulsion = 11336.737103 eV Total energy + Delta-G solvation = -2038.946549 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.38697 -35.35798 -32.31448 -30.28356 -29.46642 -25.18274 -23.01514 -21.96795 -20.65749 -19.21171 -18.39003 -15.82014 -15.34904 -14.55768 -14.26587 -13.51343 -13.21728 -12.82969 -12.51084 -12.01706 -11.28035 -11.07699 -10.99985 -10.74918 -10.58002 -10.21835 -10.10862 -9.75306 -9.41502 -9.33100 -8.66081 -8.51548 -8.26868 -8.09373 -7.50801 -5.92018 -4.00466 3.26925 3.35308 3.38166 4.41315 5.16247 5.29307 5.32943 6.01374 6.06384 6.15200 6.36079 6.42714 6.51608 6.58076 6.67944 6.71023 6.83131 6.91583 7.06678 7.10951 7.20871 7.31648 7.38888 7.59643 7.71390 7.73720 7.91930 7.96487 8.27155 8.30988 8.55157 8.99801 9.60200 11.07057 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.029145 B = 0.020084 C = 0.015031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.489851 B = 1393.815201 C = 1862.353055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.069 3.931 3 Si 0.875 3.125 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.499 4.499 8 H 0.050 0.950 9 C 0.099 3.901 10 C -0.101 4.101 11 C -0.214 4.214 12 C -0.131 4.131 13 C -0.096 4.096 14 C 0.068 3.932 15 N -0.694 5.694 16 C 0.071 3.929 17 C -0.101 4.101 18 H 0.257 0.743 19 H 0.064 0.936 20 H 0.080 0.920 21 H 0.061 0.939 22 H 0.113 0.887 23 H 0.054 0.946 24 H 0.041 0.959 25 H 0.048 0.952 26 H 0.034 0.966 27 H 0.045 0.955 28 H 0.321 0.679 29 H 0.038 0.962 30 H 0.043 0.957 31 H 0.101 0.899 32 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.235 -3.146 1.137 4.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.132 4.132 3 Si 0.703 3.297 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.537 4.537 8 H 0.069 0.931 9 C 0.099 3.901 10 C -0.120 4.120 11 C -0.252 4.252 12 C -0.168 4.168 13 C -0.134 4.134 14 C -0.061 4.061 15 N -0.324 5.324 16 C -0.057 4.057 17 C -0.139 4.139 18 H 0.068 0.932 19 H 0.082 0.918 20 H 0.098 0.902 21 H 0.079 0.921 22 H 0.131 0.869 23 H 0.072 0.928 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.136 0.864 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.119 0.881 32 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 1.621 -3.445 0.846 3.900 hybrid contribution 1.014 1.695 0.185 1.984 sum 2.634 -1.749 1.031 3.326 Atomic orbital electron populations 1.69938 1.05414 1.25750 1.49670 1.24824 0.94727 0.98259 0.95432 0.86874 0.80087 0.84587 0.78152 1.20746 1.21284 1.20257 1.21027 0.92585 0.90247 1.49886 0.93137 1.17702 0.90758 0.92012 0.89666 1.22103 0.97959 1.01252 0.90656 1.22876 0.98854 1.02328 1.01101 1.22783 0.99748 0.93133 1.01129 1.21561 0.98214 0.98909 0.94712 1.21800 0.93870 0.98648 0.91791 1.60456 1.21209 1.46767 1.03961 1.21835 0.94427 0.91257 0.98220 1.21596 0.98342 1.00532 0.93416 0.93247 0.91754 0.90169 0.92065 0.86913 0.92765 0.94055 0.93343 0.94741 0.93610 0.86420 0.94416 0.93882 0.88125 0.96031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.74 9.15 55.43 0.51 -22.24 16 2 C 0.07 1.77 3.30 -17.82 -0.06 1.71 16 3 Si 0.87 20.37 29.54 -169.99 -5.02 15.35 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.50 -12.61 4.94 -34.44 -0.17 -12.78 16 8 H 0.05 1.32 7.11 -52.48 -0.37 0.95 16 9 C 0.10 2.33 0.36 -155.55 -0.06 2.27 16 10 C -0.10 -2.36 4.82 -90.58 -0.44 -2.80 16 11 C -0.21 -4.56 9.61 -26.73 -0.26 -4.81 16 12 C -0.13 -3.07 8.18 -26.69 -0.22 -3.29 16 13 C -0.10 -2.06 4.55 -26.65 -0.12 -2.18 16 14 C 0.07 1.35 6.34 -3.83 -0.02 1.32 16 15 N -0.69 -13.48 6.85 -113.81 -0.78 -14.26 16 16 C 0.07 1.53 6.34 -3.83 -0.02 1.50 16 17 C -0.10 -2.37 4.59 -26.65 -0.12 -2.49 16 18 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 19 H 0.06 1.51 8.06 -51.93 -0.42 1.09 16 20 H 0.08 1.71 7.20 -51.93 -0.37 1.33 16 21 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 22 H 0.11 2.89 5.03 -51.93 -0.26 2.63 16 23 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 24 H 0.04 0.87 8.14 -51.92 -0.42 0.45 16 25 H 0.05 1.02 7.00 -51.93 -0.36 0.65 16 26 H 0.03 0.73 6.91 -51.93 -0.36 0.37 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.32 5.36 8.90 -39.29 -0.35 5.01 16 29 H 0.04 0.88 7.31 -51.93 -0.38 0.50 16 30 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.10 2.60 5.75 -51.93 -0.30 2.30 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 240.32 15.07 3.62 3.62 Total: -1.00 -25.73 240.32 -8.01 -33.74 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -4.85 Total: 5.34 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -1.49 Total: -21.55 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: -0.27 Total: -36.50 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -25.73 -8.01 -33.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238543330.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.909 kcal (2) G-P(sol) polarization free energy of solvation -25.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds