Wall clock time and date at job start Mon Mar 30 2020 02:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99947 * 2 1 4 4 H 1.48504 * 109.47066 * 269.99549 * 3 2 1 5 5 H 1.48500 * 109.47357 * 29.99685 * 3 2 1 6 6 H 1.48501 * 109.47220 * 149.99834 * 3 2 1 7 7 C 1.37878 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99593 * 175.57955 * 7 2 1 9 9 C 1.50694 * 120.00046 * 355.58508 * 7 2 1 10 10 C 1.52996 * 109.52503 * 65.70776 * 9 7 2 11 11 C 1.53001 * 117.49743 * 67.08524 * 10 9 7 12 12 C 1.53002 * 60.03301 * 252.47502 * 11 10 9 13 13 C 1.53120 * 109.52026 * 185.83427 * 9 7 2 14 14 C 1.53046 * 109.27727 * 62.37683 * 13 9 7 15 15 N 1.46850 * 109.57421 * 59.08302 * 14 13 9 16 16 C 1.46851 * 111.19562 * 298.29075 * 15 14 13 17 17 C 1.53036 * 109.52287 * 61.74210 * 16 15 14 18 18 H 0.97000 * 119.99807 * 0.02562 * 1 2 3 19 19 H 1.09002 * 115.55389 * 212.75434 * 10 9 7 20 20 H 1.08993 * 117.50033 * 359.97438 * 11 10 9 21 21 H 1.08999 * 117.49922 * 144.97762 * 11 10 9 22 22 H 1.09000 * 117.49930 * 107.49720 * 12 11 10 23 23 H 1.08995 * 117.50314 * 252.52333 * 12 11 10 24 24 H 1.09008 * 109.50355 * 182.25333 * 13 9 7 25 25 H 1.09001 * 109.50614 * 302.37036 * 13 9 7 26 26 H 1.08999 * 109.40653 * 299.06942 * 14 13 9 27 27 H 1.08994 * 109.45438 * 179.12291 * 14 13 9 28 28 H 1.00900 * 110.99780 * 174.19664 * 15 14 13 29 29 H 1.09000 * 109.46160 * 301.72360 * 16 15 14 30 30 H 1.09003 * 109.45943 * 181.76154 * 16 15 14 31 31 H 1.09003 * 109.49988 * 180.87544 * 17 16 15 32 32 H 1.09005 * 109.53185 * 60.78513 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0821 -1.1955 -0.0716 9 6 1.2543 -2.4971 0.1016 10 6 0.3992 -2.6934 -1.1518 11 6 1.1297 -2.9138 -2.4780 12 6 0.4239 -1.5838 -2.2061 13 6 2.2509 -3.6528 0.2272 14 6 3.0605 -3.4841 1.5150 15 7 2.1520 -3.4682 2.6687 16 6 1.2174 -2.3381 2.5930 17 6 0.3518 -2.4734 1.3382 18 1 -0.4850 0.8401 -0.0004 19 1 -0.5413 -3.2235 -1.0011 20 1 2.2194 -2.9186 -2.4576 21 1 0.6700 -3.5892 -3.1996 22 1 1.0493 -0.7137 -2.0068 23 1 -0.5003 -1.3844 -2.7485 24 1 1.7095 -4.5983 0.2600 25 1 2.9240 -3.6478 -0.6302 26 1 3.6132 -2.5455 1.4750 27 1 3.7602 -4.3138 1.6152 28 1 2.6685 -3.4529 3.5354 29 1 1.7789 -1.4049 2.5480 30 1 0.5787 -2.3352 3.4763 31 1 -0.3311 -1.6262 1.2742 32 1 -0.2209 -3.3995 1.3887 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238543330.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:45 Heat of formation + Delta-G solvation = 10.041104 kcal Electronic energy + Delta-G solvation = -13376.339605 eV Core-core repulsion = 11336.737103 eV Total energy + Delta-G solvation = -2039.602502 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.16169 -37.08105 -34.23436 -32.04138 -31.20227 -27.12653 -24.77428 -23.68763 -22.43006 -20.97900 -20.26190 -17.55253 -17.23190 -16.44141 -16.03036 -15.22594 -15.00832 -14.56606 -14.30796 -13.79232 -13.08058 -12.91299 -12.68692 -12.56670 -12.45110 -12.05968 -11.91379 -11.61040 -11.19396 -11.14124 -10.51384 -10.33630 -10.11983 -9.96986 -9.14320 -7.88521 -6.00332 1.39132 1.44926 1.49294 2.48204 3.32062 3.51771 3.60502 4.28972 4.44343 4.46874 4.63429 4.70841 4.74727 4.85341 4.91617 5.03147 5.11315 5.17374 5.24968 5.41464 5.42885 5.51536 5.59114 5.72513 5.80701 5.90065 6.08410 6.14085 6.47195 6.59917 6.79929 7.04651 7.61693 9.08707 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.029145 B = 0.020084 C = 0.015031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.489851 B = 1393.815201 C = 1862.353055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.040 3.960 3 Si 0.918 3.082 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.499 4.499 8 H 0.038 0.962 9 C 0.092 3.908 10 C -0.116 4.116 11 C -0.187 4.187 12 C -0.142 4.142 13 C -0.094 4.094 14 C 0.070 3.930 15 N -0.689 5.689 16 C 0.079 3.921 17 C -0.099 4.099 18 H 0.254 0.746 19 H 0.059 0.941 20 H 0.080 0.920 21 H 0.087 0.913 22 H 0.089 0.911 23 H 0.056 0.944 24 H 0.044 0.956 25 H 0.050 0.950 26 H 0.018 0.982 27 H 0.076 0.924 28 H 0.340 0.660 29 H 0.015 0.985 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.960 -4.082 1.273 5.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.160 4.160 3 Si 0.746 3.254 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.538 4.538 8 H 0.057 0.943 9 C 0.092 3.908 10 C -0.135 4.135 11 C -0.224 4.224 12 C -0.179 4.179 13 C -0.131 4.131 14 C -0.059 4.059 15 N -0.320 5.320 16 C -0.050 4.050 17 C -0.137 4.137 18 H 0.064 0.936 19 H 0.078 0.922 20 H 0.099 0.901 21 H 0.106 0.894 22 H 0.107 0.893 23 H 0.075 0.925 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.036 0.964 27 H 0.095 0.905 28 H 0.158 0.842 29 H 0.033 0.967 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 2.360 -4.387 0.992 5.079 hybrid contribution 0.780 1.971 0.141 2.124 sum 3.140 -2.416 1.133 4.121 Atomic orbital electron populations 1.70044 1.06107 1.25802 1.50340 1.25213 0.95180 1.00102 0.95481 0.86194 0.79059 0.82306 0.77805 1.20804 1.21480 1.20435 1.21088 0.91969 0.91245 1.49493 0.94343 1.17753 0.91165 0.92151 0.89726 1.22135 0.98304 1.01573 0.91475 1.22882 0.98762 1.00787 0.99966 1.22627 1.00000 0.93181 1.02090 1.21509 0.97880 0.97952 0.95800 1.21784 0.93879 0.99040 0.91180 1.60392 1.21311 1.45335 1.04967 1.21665 0.94566 0.90933 0.97885 1.21496 0.98317 0.99194 0.94690 0.93647 0.92239 0.90123 0.89437 0.89252 0.92498 0.93761 0.93150 0.96411 0.90542 0.84232 0.96706 0.92267 0.90744 0.96150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.65 9.15 21.45 0.20 -46.45 16 2 C 0.04 2.06 3.30 84.66 0.28 2.34 16 3 Si 0.92 41.90 29.54 68.60 2.03 43.93 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.50 -25.13 4.94 25.60 0.13 -25.00 16 8 H 0.04 2.00 7.11 -2.91 -0.02 1.98 16 9 C 0.09 4.28 0.36 -52.85 -0.02 4.26 16 10 C -0.12 -5.33 4.82 -10.77 -0.05 -5.38 16 11 C -0.19 -7.58 9.61 30.60 0.29 -7.29 16 12 C -0.14 -6.57 8.18 30.62 0.25 -6.32 16 13 C -0.09 -3.83 4.55 30.65 0.14 -3.69 16 14 C 0.07 2.62 6.34 86.33 0.55 3.17 16 15 N -0.69 -25.09 6.85 -513.98 -3.52 -28.61 16 16 C 0.08 3.27 6.34 86.32 0.55 3.82 16 17 C -0.10 -4.60 4.59 30.64 0.14 -4.46 16 18 H 0.25 13.14 8.31 -92.71 -0.77 12.37 16 19 H 0.06 2.76 8.06 -2.39 -0.02 2.74 16 20 H 0.08 3.27 7.20 -2.39 -0.02 3.25 16 21 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 22 H 0.09 4.59 5.03 -2.39 -0.01 4.57 16 23 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 24 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 25 H 0.05 2.01 7.00 -2.39 -0.02 2.00 16 26 H 0.02 0.72 6.91 -2.39 -0.02 0.71 16 27 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.34 10.36 8.90 -89.69 -0.80 9.56 16 29 H 0.01 0.68 7.31 -2.39 -0.02 0.66 16 30 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 31 H 0.07 3.88 5.75 -2.39 -0.01 3.87 16 32 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -52.99 240.32 1.26 -51.73 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.30 Total: 17.94 kcal Atomic # 6 Polarization: -40.79 SS G_CDS: 2.25 Total: -38.54 kcal Atomic # 7 Polarization: -71.74 SS G_CDS: -3.32 Total: -75.06 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -52.99 1.26 -51.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238543330.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.773 kcal (2) G-P(sol) polarization free energy of solvation -52.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds