Wall clock time and date at job start Mon Mar 30 2020 01:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 N 1.30830 * 125.95674 * 265.02444 * 4 2 1 6 6 C 1.33249 * 109.82694 * 179.97438 * 5 4 2 7 7 C 1.50701 * 125.52696 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47058 * 89.99901 * 7 6 5 9 9 H 1.07992 * 120.00018 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99719 * 180.02562 * 8 7 6 11 11 N 1.31510 * 119.99957 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00035 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47520 * 59.99690 * 12 10 8 14 14 H 1.48499 * 109.47342 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47166 * 299.99773 * 12 10 8 16 16 N 1.30707 * 108.94467 * 0.02562 * 6 5 4 17 17 N 1.34428 * 125.96236 * 84.71394 * 4 2 1 18 18 H 0.97006 * 126.82360 * 0.02562 * 17 4 2 19 19 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 22 22 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 23 23 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 24 24 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 25 25 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 26 26 H 1.09005 * 109.46792 * 210.00222 * 7 6 5 27 27 H 1.08999 * 109.47069 * 329.99842 * 7 6 5 28 28 H 0.97002 * 119.99951 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 7 2.3750 -1.9708 -1.3039 6 6 2.7709 -2.2602 -2.5428 7 6 3.2417 -3.6104 -3.0188 8 6 2.0642 -4.4037 -3.5237 9 1 1.0740 -3.9731 -3.5024 10 6 2.2510 -5.6792 -4.0127 11 7 3.4569 -6.2033 -4.0391 12 14 0.7915 -6.6623 -4.6392 13 1 0.1523 -5.9362 -5.7659 14 1 1.2552 -7.9933 -5.1070 15 1 -0.1936 -6.8395 -3.5422 16 7 2.6858 -1.1829 -3.2781 17 7 2.2010 -0.1608 -2.4457 18 1 2.0252 0.7595 -2.6972 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 1.6767 1.9563 0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8899 26 1 3.9643 -3.4799 -3.8245 27 1 3.7115 -4.1435 -2.1923 28 1 3.5884 -7.1005 -4.3835 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259340606.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:52 Heat of formation + Delta-G solvation = 60.485388 kcal Electronic energy + Delta-G solvation = -11882.982509 eV Core-core repulsion = 9742.027091 eV Total energy + Delta-G solvation = -2140.955417 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.42510 -35.67651 -33.31142 -31.80215 -30.27899 -27.82282 -27.27098 -23.59429 -23.17877 -19.87058 -19.38711 -17.19339 -16.33762 -15.21681 -14.73600 -14.55444 -14.20586 -13.10329 -12.64488 -12.38185 -12.12888 -11.92113 -11.42902 -11.35184 -11.24176 -10.86093 -10.76616 -10.60426 -9.94760 -9.64406 -9.21368 -9.15637 -8.54331 -8.37098 -6.00223 -4.02091 2.29165 3.26234 3.37898 3.40479 3.43987 3.79038 4.35938 4.51199 4.74161 4.96752 5.22724 5.35447 5.41748 5.60309 5.62836 5.71438 5.75754 5.90197 6.11237 6.16005 7.08978 7.30474 7.47003 7.59012 7.73324 7.95083 8.31392 8.97845 8.98928 9.59706 11.10937 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.058917 B = 0.008240 C = 0.007752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.131109 B = 3397.241428 C = 3611.245476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.014 4.014 3 C -0.151 4.151 4 C 0.267 3.733 5 N -0.535 5.535 6 C 0.271 3.729 7 C 0.102 3.898 8 C -0.506 4.506 9 H 0.054 0.946 10 C 0.060 3.940 11 N -0.894 5.894 12 Si 0.900 3.100 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.276 1.276 16 N -0.333 5.333 17 N -0.499 5.499 18 H 0.427 0.573 19 H 0.067 0.933 20 H 0.066 0.934 21 H 0.054 0.946 22 H 0.105 0.895 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.181 13.434 7.427 15.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.036 4.036 3 C -0.209 4.209 4 C -0.012 4.012 5 N -0.264 5.264 6 C -0.010 4.010 7 C 0.063 3.937 8 C -0.546 4.546 9 H 0.072 0.928 10 C -0.141 4.141 11 N -0.533 5.533 12 Si 0.728 3.272 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.202 1.202 16 N -0.160 5.160 17 N -0.216 5.216 18 H 0.271 0.729 19 H 0.086 0.914 20 H 0.086 0.914 21 H 0.073 0.927 22 H 0.123 0.877 23 H 0.089 0.911 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.859 12.978 6.868 15.182 hybrid contribution -0.975 0.163 -0.460 1.091 sum -4.834 13.142 6.408 15.399 Atomic orbital electron populations 1.21831 0.93176 1.03217 1.01993 1.19686 0.96304 0.94760 0.92803 1.21900 1.01759 0.94747 1.02457 1.24198 0.97621 0.90639 0.88783 1.70431 1.21466 1.11537 1.22935 1.25421 0.93030 0.96721 0.85796 1.17802 0.97094 0.81767 0.97085 1.20823 0.93235 0.99107 1.41397 0.92758 1.24934 0.96047 0.97396 0.95745 1.69936 1.20778 1.16192 1.46397 0.86519 0.82511 0.78962 0.79210 1.20246 1.21141 1.20150 1.78094 1.24519 0.97062 1.16346 1.47971 1.53183 1.12574 1.07920 0.72922 0.91449 0.91445 0.92721 0.87678 0.91054 0.91976 0.92737 0.93867 0.93355 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.18 37.16 0.34 -1.18 15 2 C -0.01 -0.17 3.39 -91.77 -0.31 -0.48 15 3 C -0.15 -1.31 8.95 37.16 0.33 -0.97 15 4 C 0.27 4.71 6.94 -155.69 -1.08 3.63 15 5 N -0.54 -12.22 11.19 -8.16 -0.09 -12.31 15 6 C 0.27 6.83 7.33 -156.85 -1.15 5.68 15 7 C 0.10 2.86 5.60 -29.04 -0.16 2.69 15 8 C -0.51 -15.04 9.09 -34.44 -0.31 -15.35 15 9 H 0.05 1.63 7.74 -52.49 -0.41 1.22 15 10 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 11 N -0.89 -26.98 13.29 55.43 0.74 -26.24 15 12 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 15 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 16 N -0.33 -7.68 12.80 32.42 0.41 -7.27 15 17 N -0.50 -8.74 7.21 32.62 0.24 -8.50 15 18 H 0.43 5.57 8.22 -182.33 -1.50 4.07 15 19 H 0.07 0.53 8.14 -51.93 -0.42 0.11 15 20 H 0.07 0.85 8.14 -51.93 -0.42 0.42 15 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 15 22 H 0.11 1.24 8.14 -51.93 -0.42 0.82 15 23 H 0.07 0.47 8.14 -51.93 -0.42 0.05 15 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 15 25 H 0.05 0.42 7.47 -51.93 -0.39 0.03 15 26 H 0.04 1.25 8.14 -51.93 -0.42 0.82 15 27 H 0.05 1.40 8.14 -51.93 -0.42 0.98 15 28 H 0.26 7.47 8.31 -40.82 -0.34 7.14 15 LS Contribution 248.14 15.07 3.74 3.74 Total: -1.00 -33.67 248.14 -7.24 -40.90 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -4.81 Total: -3.23 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -2.44 Total: -4.32 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: 1.30 Total: -54.32 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -33.67 -7.24 -40.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259340606.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.390 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds