Wall clock time and date at job start Mon Mar 30 2020 01:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 N 1.30830 * 125.95674 * 265.02444 * 4 2 1 6 6 C 1.33249 * 109.82694 * 179.97438 * 5 4 2 7 7 C 1.50701 * 125.52696 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47058 * 89.99901 * 7 6 5 9 9 H 1.07992 * 120.00018 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99719 * 180.02562 * 8 7 6 11 11 N 1.31510 * 119.99957 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00035 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47520 * 59.99690 * 12 10 8 14 14 H 1.48499 * 109.47342 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47166 * 299.99773 * 12 10 8 16 16 N 1.30707 * 108.94467 * 0.02562 * 6 5 4 17 17 N 1.34428 * 125.96236 * 84.71394 * 4 2 1 18 18 H 0.97006 * 126.82360 * 0.02562 * 17 4 2 19 19 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 22 22 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 23 23 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 24 24 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 25 25 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 26 26 H 1.09005 * 109.46792 * 210.00222 * 7 6 5 27 27 H 1.08999 * 109.47069 * 329.99842 * 7 6 5 28 28 H 0.97002 * 119.99951 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 7 2.3750 -1.9708 -1.3039 6 6 2.7709 -2.2602 -2.5428 7 6 3.2417 -3.6104 -3.0188 8 6 2.0642 -4.4037 -3.5237 9 1 1.0740 -3.9731 -3.5024 10 6 2.2510 -5.6792 -4.0127 11 7 3.4569 -6.2033 -4.0391 12 14 0.7915 -6.6623 -4.6392 13 1 0.1523 -5.9362 -5.7659 14 1 1.2552 -7.9933 -5.1070 15 1 -0.1936 -6.8395 -3.5422 16 7 2.6858 -1.1829 -3.2781 17 7 2.2010 -0.1608 -2.4457 18 1 2.0252 0.7595 -2.6972 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 1.6767 1.9563 0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8899 26 1 3.9643 -3.4799 -3.8245 27 1 3.7115 -4.1435 -2.1923 28 1 3.5884 -7.1005 -4.3835 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259340606.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:51 Heat of formation + Delta-G solvation = 37.345226 kcal Electronic energy + Delta-G solvation = -11883.985941 eV Core-core repulsion = 9742.027091 eV Total energy + Delta-G solvation = -2141.958850 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.06121 -36.80798 -35.38918 -33.57047 -32.04111 -29.77499 -28.05356 -25.68566 -24.50826 -21.30396 -21.08339 -18.69042 -18.57980 -16.63174 -16.50450 -16.17275 -15.25087 -14.55826 -14.29176 -13.89594 -13.67190 -13.16364 -13.06983 -12.74833 -12.64375 -12.42453 -12.19527 -11.99732 -11.86195 -11.75704 -10.95030 -10.89557 -10.62164 -10.31282 -8.24547 -6.36752 0.71708 1.39421 1.43867 1.51914 1.84357 2.01112 2.42758 3.06227 3.11686 3.75964 3.95085 4.10795 4.22749 4.47340 4.74048 4.88059 4.92344 5.09160 5.15647 5.26035 5.26589 5.33840 5.48541 5.53770 5.65958 6.06877 6.34153 6.68269 7.29211 7.30251 8.87102 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.058917 B = 0.008240 C = 0.007752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.131109 B = 3397.241428 C = 3611.245476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.014 4.014 3 C -0.145 4.145 4 C 0.286 3.714 5 N -0.577 5.577 6 C 0.249 3.751 7 C 0.112 3.888 8 C -0.530 4.530 9 H 0.045 0.955 10 C 0.011 3.989 11 N -0.925 5.925 12 Si 0.973 3.027 13 H -0.270 1.270 14 H -0.273 1.273 15 H -0.268 1.268 16 N -0.355 5.355 17 N -0.479 5.479 18 H 0.450 0.550 19 H 0.103 0.897 20 H 0.040 0.960 21 H 0.059 0.941 22 H 0.108 0.892 23 H 0.102 0.898 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.021 0.979 27 H 0.025 0.975 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.875 14.963 8.121 18.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.035 4.035 3 C -0.203 4.203 4 C 0.008 3.992 5 N -0.306 5.306 6 C -0.033 4.033 7 C 0.072 3.928 8 C -0.569 4.569 9 H 0.063 0.937 10 C -0.188 4.188 11 N -0.564 5.564 12 Si 0.797 3.203 13 H -0.195 1.195 14 H -0.197 1.197 15 H -0.193 1.193 16 N -0.184 5.184 17 N -0.198 5.198 18 H 0.298 0.702 19 H 0.122 0.878 20 H 0.060 0.940 21 H 0.078 0.922 22 H 0.126 0.874 23 H 0.121 0.879 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.039 0.961 27 H 0.043 0.957 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.554 14.558 7.564 17.320 hybrid contribution -0.433 -0.195 -0.613 0.775 sum -5.987 14.363 6.951 17.043 Atomic orbital electron populations 1.21841 0.91671 1.02204 1.04124 1.20057 0.97320 0.96324 0.89786 1.21916 1.01409 0.92270 1.04724 1.25233 0.94637 0.89260 0.90103 1.70337 1.23505 1.14567 1.22238 1.24796 0.95039 0.96211 0.87265 1.17409 0.96295 0.83690 0.95404 1.21023 0.93194 1.00144 1.42584 0.93669 1.25879 0.99281 0.98252 0.95423 1.70048 1.22944 1.16790 1.46583 0.85386 0.78610 0.77550 0.78779 1.19455 1.19744 1.19320 1.77915 1.25173 0.97657 1.17698 1.47760 1.51963 1.12766 1.07322 0.70199 0.87795 0.94025 0.92155 0.87403 0.87933 0.92583 0.91418 0.96098 0.95723 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.18 71.98 0.66 -1.88 15 2 C -0.01 -0.29 3.39 -11.54 -0.04 -0.33 15 3 C -0.15 -1.93 8.95 71.98 0.64 -1.29 15 4 C 0.29 9.78 6.94 138.23 0.96 10.74 15 5 N -0.58 -26.77 11.19 -179.72 -2.01 -28.78 15 6 C 0.25 12.93 7.33 138.63 1.02 13.95 15 7 C 0.11 6.59 5.60 29.10 0.16 6.75 15 8 C -0.53 -32.54 9.09 25.60 0.23 -32.30 15 9 H 0.04 2.78 7.74 -2.91 -0.02 2.76 15 10 C 0.01 0.64 5.46 84.66 0.46 1.10 15 11 N -0.92 -56.90 13.29 21.45 0.28 -56.61 15 12 Si 0.97 45.81 29.54 68.60 2.03 47.83 15 13 H -0.27 -12.31 7.11 99.48 0.71 -11.60 15 14 H -0.27 -12.17 7.11 99.48 0.71 -11.46 15 15 H -0.27 -12.23 7.11 99.48 0.71 -11.52 15 16 N -0.36 -16.61 12.80 -51.33 -0.66 -17.26 15 17 N -0.48 -16.14 7.21 -50.70 -0.37 -16.50 15 18 H 0.45 10.60 8.22 -213.09 -1.75 8.85 15 19 H 0.10 1.17 8.14 -2.39 -0.02 1.15 15 20 H 0.04 0.97 8.14 -2.39 -0.02 0.96 15 21 H 0.06 1.03 8.14 -2.38 -0.02 1.01 15 22 H 0.11 2.29 8.14 -2.39 -0.02 2.27 15 23 H 0.10 0.81 8.14 -2.39 -0.02 0.79 15 24 H 0.06 0.84 8.14 -2.39 -0.02 0.82 15 25 H 0.07 0.74 7.47 -2.39 -0.02 0.72 15 26 H 0.02 1.28 8.14 -2.38 -0.02 1.26 15 27 H 0.02 1.52 8.14 -2.39 -0.02 1.50 15 28 H 0.27 15.42 8.31 -92.71 -0.77 14.65 15 Total: -1.00 -75.22 248.14 2.78 -72.44 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -0.60 Total: 2.15 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 4.10 Total: -3.26 kcal Atomic # 7 Polarization: -116.42 SS G_CDS: -2.75 Total: -119.16 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -75.22 2.78 -72.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259340606.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.787 kcal (2) G-P(sol) polarization free energy of solvation -75.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds