Wall clock time and date at job start Mon Mar 30 2020 03:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00091 * 2 1 4 4 H 1.48501 * 109.47309 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46999 * 240.00106 * 3 2 1 6 6 H 1.48498 * 109.46766 * 120.00359 * 3 2 1 7 7 C 1.37874 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99946 * 342.77905 * 7 2 1 9 9 C 1.50702 * 120.00096 * 162.78024 * 7 2 1 10 10 H 1.09008 * 109.82363 * 55.32721 * 9 7 2 11 11 C 1.53629 * 109.83487 * 294.43576 * 9 7 2 12 12 C 1.52830 * 110.60441 * 296.88664 * 11 9 7 13 13 C 1.53631 * 110.65108 * 306.13046 * 12 11 9 14 14 N 1.45542 * 107.86100 * 57.13435 * 13 12 11 15 15 C 1.46331 * 117.21631 * 174.46802 * 14 13 12 16 16 C 1.54798 * 105.96502 * 151.91664 * 15 14 13 17 17 C 1.55331 * 104.99195 * 356.35396 * 16 15 14 18 18 C 1.48665 * 109.70388 * 294.68237 * 14 13 12 19 19 H 1.09005 * 111.10823 * 308.09775 * 18 14 13 20 20 H 0.97000 * 120.00517 * 174.57507 * 1 2 3 21 21 H 1.08998 * 109.25304 * 57.17434 * 11 9 7 22 22 H 1.09003 * 109.25081 * 176.59839 * 11 9 7 23 23 H 1.08995 * 109.24241 * 66.43665 * 12 11 9 24 24 H 1.09003 * 109.23847 * 185.87041 * 12 11 9 25 25 H 1.08997 * 109.78134 * 176.72047 * 13 12 11 26 26 H 1.08994 * 109.78892 * 297.48804 * 13 12 11 27 27 H 1.09003 * 110.15250 * 271.04159 * 15 14 13 28 28 H 1.08997 * 110.15288 * 32.78931 * 15 14 13 29 29 H 1.08995 * 110.33595 * 237.47562 * 16 15 14 30 30 H 1.08997 * 110.33615 * 115.23577 * 16 15 14 31 31 H 1.08991 * 110.90993 * 219.60644 * 17 16 15 32 32 H 1.09002 * 110.90631 * 95.99749 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 1.5007 -2.1085 0.2760 9 6 3.4608 -1.2232 -0.3869 10 1 4.0230 -0.5291 0.2378 11 6 3.6157 -0.8364 -1.8656 12 6 2.9159 -1.8554 -2.7643 13 6 3.4105 -3.2774 -2.4583 14 7 3.1713 -3.5391 -1.0468 15 6 3.4543 -4.8895 -0.5592 16 6 3.8213 -4.7338 0.9366 17 6 3.8087 -3.2024 1.1962 18 6 4.0119 -2.6339 -0.2197 19 1 5.0575 -2.6821 -0.5240 20 1 -0.4851 -0.8362 -0.0794 21 1 3.1756 0.1476 -2.0277 22 1 4.6753 -0.8016 -2.1189 23 1 1.8404 -1.8049 -2.5950 24 1 3.1268 -1.6190 -3.8073 25 1 2.8615 -3.9974 -3.0652 26 1 4.4766 -3.3514 -2.6726 27 1 2.5715 -5.5199 -0.6656 28 1 4.2919 -5.3192 -1.1086 29 1 4.8136 -5.1422 1.1277 30 1 3.0796 -5.2302 1.5623 31 1 4.6285 -2.9124 1.8532 32 1 2.8507 -2.8857 1.6087 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259575892.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:47 Heat of formation + Delta-G solvation = -1.288111 kcal Electronic energy + Delta-G solvation = -13252.389238 eV Core-core repulsion = 11212.295464 eV Total energy + Delta-G solvation = -2040.093774 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.20243 -34.51074 -32.65981 -30.94702 -28.54634 -26.70917 -24.21800 -21.58855 -20.84912 -20.11648 -18.65275 -16.68268 -15.19431 -15.08706 -14.00791 -13.81436 -13.44829 -12.95702 -12.66689 -12.25693 -11.94965 -11.54201 -11.17434 -10.84905 -10.59944 -10.51637 -10.41421 -10.01021 -9.96498 -9.62991 -9.39457 -9.13558 -8.50369 -8.07724 -7.40831 -6.19519 -3.76379 3.48330 3.52696 3.70661 4.65256 4.68399 5.18512 5.36695 5.46913 5.48907 5.77417 5.85266 5.88260 6.01291 6.07877 6.16716 6.22880 6.25261 6.46201 6.50385 6.59060 6.60960 6.80067 7.01976 7.10778 7.18574 7.30435 7.51418 7.81732 8.07579 8.44525 8.67165 9.24559 9.86804 11.17992 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.040874 B = 0.015103 C = 0.013614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.866298 B = 1853.468171 C = 2056.190203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.024 3.976 3 Si 1.035 2.965 4 H -0.291 1.291 5 H -0.278 1.278 6 H -0.287 1.287 7 C -0.555 4.555 8 H 0.069 0.931 9 C 0.027 3.973 10 H 0.021 0.979 11 C -0.123 4.123 12 C -0.098 4.098 13 C 0.071 3.929 14 N -0.514 5.514 15 C 0.050 3.950 16 C -0.128 4.128 17 C -0.111 4.111 18 C 0.087 3.913 19 H 0.024 0.976 20 H 0.266 0.734 21 H 0.061 0.939 22 H 0.022 0.978 23 H 0.079 0.921 24 H 0.040 0.960 25 H 0.058 0.942 26 H 0.014 0.986 27 H 0.066 0.934 28 H 0.023 0.977 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.386 -6.010 -1.822 10.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.179 4.179 3 Si 0.865 3.135 4 H -0.217 1.217 5 H -0.205 1.205 6 H -0.214 1.214 7 C -0.593 4.593 8 H 0.087 0.913 9 C 0.007 3.993 10 H 0.039 0.961 11 C -0.161 4.161 12 C -0.136 4.136 13 C -0.057 4.057 14 N -0.239 5.239 15 C -0.078 4.078 16 C -0.166 4.166 17 C -0.149 4.149 18 C -0.020 4.020 19 H 0.042 0.958 20 H 0.076 0.924 21 H 0.079 0.921 22 H 0.041 0.959 23 H 0.098 0.902 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.032 0.968 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.656 -4.294 -1.724 8.946 hybrid contribution 1.111 -1.921 -0.399 2.255 sum 8.767 -6.215 -2.123 10.954 Atomic orbital electron populations 1.70814 1.07098 1.30189 1.47309 1.25592 0.96209 1.01895 0.94192 0.84210 0.75461 0.76943 0.76865 1.21687 1.20459 1.21419 1.21882 0.93426 0.96071 1.47936 0.91268 1.19026 0.98429 0.90339 0.91460 0.96121 1.22052 0.96348 0.99075 0.98619 1.21385 1.02759 0.92978 0.96496 1.21836 0.96768 0.98048 0.89068 1.62655 1.55101 1.02630 1.03541 1.22463 0.98441 0.91908 0.94966 1.22622 1.00114 0.98123 0.95729 1.22365 1.03027 0.92847 0.96619 1.22462 0.92050 0.95530 0.91983 0.95770 0.92432 0.92096 0.95946 0.90218 0.94135 0.92347 0.96764 0.91545 0.95912 0.92677 0.91762 0.92609 0.88879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.39 13.69 55.43 0.76 -27.63 16 2 C 0.02 0.69 5.33 -17.82 -0.10 0.59 16 3 Si 1.04 25.42 26.37 -169.99 -4.48 20.94 16 4 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 5 H -0.28 -6.34 5.64 56.52 0.32 -6.03 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.55 -15.15 6.63 -34.44 -0.23 -15.37 16 8 H 0.07 2.07 6.92 -52.49 -0.36 1.71 16 9 C 0.03 0.63 1.92 -91.77 -0.18 0.46 16 10 H 0.02 0.50 6.88 -51.92 -0.36 0.14 16 11 C -0.12 -2.72 5.14 -26.49 -0.14 -2.86 16 12 C -0.10 -2.04 5.76 -26.49 -0.15 -2.19 16 13 C 0.07 1.35 5.85 -4.23 -0.02 1.33 16 14 N -0.51 -10.52 3.87 -225.06 -0.87 -11.39 16 15 C 0.05 0.87 6.86 -3.19 -0.02 0.85 16 16 C -0.13 -2.06 6.98 -24.55 -0.17 -2.23 16 17 C -0.11 -2.11 6.44 -25.02 -0.16 -2.27 16 18 C 0.09 1.82 2.38 -66.58 -0.16 1.66 16 19 H 0.02 0.49 8.05 -51.93 -0.42 0.07 16 20 H 0.27 8.26 8.73 -40.82 -0.36 7.90 16 21 H 0.06 1.42 4.80 -51.93 -0.25 1.18 16 22 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.08 1.89 7.63 -51.93 -0.40 1.50 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.01 0.26 8.04 -51.93 -0.42 -0.16 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.02 0.36 8.04 -51.93 -0.42 -0.06 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.09 2.03 6.52 -51.93 -0.34 1.70 16 LS Contribution 239.68 15.07 3.61 3.61 Total: -1.00 -29.34 239.68 -7.46 -36.80 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -5.15 Total: -2.28 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -1.33 Total: -20.05 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: -0.11 Total: -39.02 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -4.48 Total: 20.94 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -29.34 -7.46 -36.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259575892.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.512 kcal (2) G-P(sol) polarization free energy of solvation -29.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds