Wall clock time and date at job start Mon Mar 30 2020 03:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00091 * 2 1 4 4 H 1.48501 * 109.47309 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46999 * 240.00106 * 3 2 1 6 6 H 1.48498 * 109.46766 * 120.00359 * 3 2 1 7 7 C 1.37874 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99946 * 342.77905 * 7 2 1 9 9 C 1.50702 * 120.00096 * 162.78024 * 7 2 1 10 10 H 1.09008 * 109.82363 * 55.32721 * 9 7 2 11 11 C 1.53629 * 109.83487 * 294.43576 * 9 7 2 12 12 C 1.52830 * 110.60441 * 296.88664 * 11 9 7 13 13 C 1.53631 * 110.65108 * 306.13046 * 12 11 9 14 14 N 1.45542 * 107.86100 * 57.13435 * 13 12 11 15 15 C 1.46331 * 117.21631 * 174.46802 * 14 13 12 16 16 C 1.54798 * 105.96502 * 151.91664 * 15 14 13 17 17 C 1.55331 * 104.99195 * 356.35396 * 16 15 14 18 18 C 1.48665 * 109.70388 * 294.68237 * 14 13 12 19 19 H 1.09005 * 111.10823 * 308.09775 * 18 14 13 20 20 H 0.97000 * 120.00517 * 174.57507 * 1 2 3 21 21 H 1.08998 * 109.25304 * 57.17434 * 11 9 7 22 22 H 1.09003 * 109.25081 * 176.59839 * 11 9 7 23 23 H 1.08995 * 109.24241 * 66.43665 * 12 11 9 24 24 H 1.09003 * 109.23847 * 185.87041 * 12 11 9 25 25 H 1.08997 * 109.78134 * 176.72047 * 13 12 11 26 26 H 1.08994 * 109.78892 * 297.48804 * 13 12 11 27 27 H 1.09003 * 110.15250 * 271.04159 * 15 14 13 28 28 H 1.08997 * 110.15288 * 32.78931 * 15 14 13 29 29 H 1.08995 * 110.33595 * 237.47562 * 16 15 14 30 30 H 1.08997 * 110.33615 * 115.23577 * 16 15 14 31 31 H 1.08991 * 110.90993 * 219.60644 * 17 16 15 32 32 H 1.09002 * 110.90631 * 95.99749 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 1.5007 -2.1085 0.2760 9 6 3.4608 -1.2232 -0.3869 10 1 4.0230 -0.5291 0.2378 11 6 3.6157 -0.8364 -1.8656 12 6 2.9159 -1.8554 -2.7643 13 6 3.4105 -3.2774 -2.4583 14 7 3.1713 -3.5391 -1.0468 15 6 3.4543 -4.8895 -0.5592 16 6 3.8213 -4.7338 0.9366 17 6 3.8087 -3.2024 1.1962 18 6 4.0119 -2.6339 -0.2197 19 1 5.0575 -2.6821 -0.5240 20 1 -0.4851 -0.8362 -0.0794 21 1 3.1756 0.1476 -2.0277 22 1 4.6753 -0.8016 -2.1189 23 1 1.8404 -1.8049 -2.5950 24 1 3.1268 -1.6190 -3.8073 25 1 2.8615 -3.9974 -3.0652 26 1 4.4766 -3.3514 -2.6726 27 1 2.5715 -5.5199 -0.6656 28 1 4.2919 -5.3192 -1.1086 29 1 4.8136 -5.1422 1.1277 30 1 3.0796 -5.2302 1.5623 31 1 4.6285 -2.9124 1.8532 32 1 2.8507 -2.8857 1.6087 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259575892.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:47 Heat of formation + Delta-G solvation = -20.376823 kcal Electronic energy + Delta-G solvation = -13253.216987 eV Core-core repulsion = 11212.295464 eV Total energy + Delta-G solvation = -2040.921522 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.76648 -36.17954 -34.53925 -32.80637 -30.07937 -28.29543 -26.18353 -23.27598 -22.41083 -21.55886 -20.56376 -18.65799 -16.76070 -16.63410 -15.65915 -15.50469 -15.16590 -14.72609 -14.24715 -13.97604 -13.56896 -13.11733 -12.98606 -12.42896 -12.37938 -12.08957 -12.00642 -11.76263 -11.54941 -11.38032 -11.12736 -10.88070 -10.51531 -10.24274 -8.90640 -8.47331 -6.03230 1.50306 1.57182 1.75339 2.62834 3.17692 3.31738 3.78499 3.94680 4.12186 4.28667 4.32239 4.35770 4.53059 4.62153 4.66123 4.75360 4.82415 4.94902 5.00440 5.05088 5.08924 5.25324 5.30287 5.42046 5.50364 5.57662 5.76001 6.16766 6.31148 6.50805 6.64105 6.92713 7.67946 8.88803 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.040874 B = 0.015103 C = 0.013614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.866298 B = 1853.468171 C = 2056.190203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.033 4.033 3 Si 1.074 2.926 4 H -0.301 1.301 5 H -0.247 1.247 6 H -0.269 1.269 7 C -0.532 4.532 8 H 0.029 0.971 9 C 0.017 3.983 10 H 0.023 0.977 11 C -0.124 4.124 12 C -0.097 4.097 13 C 0.074 3.926 14 N -0.549 5.549 15 C 0.049 3.951 16 C -0.119 4.119 17 C -0.113 4.113 18 C 0.086 3.914 19 H 0.046 0.954 20 H 0.247 0.753 21 H 0.044 0.956 22 H 0.053 0.947 23 H 0.034 0.966 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.065 0.935 28 H 0.046 0.954 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.356 -6.644 -2.465 13.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.228 4.228 3 Si 0.898 3.102 4 H -0.228 1.228 5 H -0.172 1.172 6 H -0.195 1.195 7 C -0.571 4.571 8 H 0.047 0.953 9 C -0.002 4.002 10 H 0.040 0.960 11 C -0.162 4.162 12 C -0.135 4.135 13 C -0.054 4.054 14 N -0.274 5.274 15 C -0.078 4.078 16 C -0.157 4.157 17 C -0.151 4.151 18 C -0.022 4.022 19 H 0.063 0.937 20 H 0.055 0.945 21 H 0.062 0.938 22 H 0.072 0.928 23 H 0.053 0.947 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.055 0.945 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.653 -4.959 -2.370 11.988 hybrid contribution 0.166 -1.818 -0.186 1.835 sum 10.820 -6.776 -2.556 13.020 Atomic orbital electron populations 1.70955 1.08507 1.28965 1.51275 1.26895 0.96113 1.05733 0.94086 0.83715 0.74856 0.72743 0.78877 1.22829 1.17193 1.19482 1.21924 0.95450 0.94112 1.45592 0.95258 1.19061 0.95618 0.92882 0.92644 0.95950 1.21986 0.98243 0.98484 0.97450 1.21351 0.99804 0.94343 0.98030 1.21818 0.98125 0.96899 0.88586 1.62561 1.56145 1.04339 1.04361 1.22523 0.99367 0.90244 0.95677 1.22601 1.02086 0.95815 0.95155 1.22302 1.01539 0.95213 0.96087 1.22405 0.92841 0.93815 0.93091 0.93667 0.94480 0.93766 0.92836 0.94680 0.91251 0.91107 0.94523 0.91662 0.93565 0.89532 0.91364 0.90563 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.88 13.69 21.45 0.29 -61.59 16 2 C -0.03 -1.95 5.33 84.65 0.45 -1.50 16 3 Si 1.07 51.22 26.37 68.60 1.81 53.03 16 4 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 5 H -0.25 -10.51 5.64 99.48 0.56 -9.94 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.53 -29.73 6.63 25.60 0.17 -29.56 16 8 H 0.03 1.84 6.92 -2.91 -0.02 1.82 16 9 C 0.02 0.79 1.92 -11.54 -0.02 0.77 16 10 H 0.02 1.03 6.88 -2.38 -0.02 1.01 16 11 C -0.12 -5.18 5.14 30.75 0.16 -5.02 16 12 C -0.10 -3.87 5.76 30.75 0.18 -3.69 16 13 C 0.07 2.59 5.85 86.77 0.51 3.10 16 14 N -0.55 -21.41 3.87 -865.96 -3.35 -24.77 16 15 C 0.05 1.56 6.86 87.02 0.60 2.16 16 16 C -0.12 -3.48 6.98 32.01 0.22 -3.26 16 17 C -0.11 -4.14 6.44 31.71 0.20 -3.94 16 18 C 0.09 3.38 2.38 44.67 0.11 3.48 16 19 H 0.05 1.61 8.05 -2.38 -0.02 1.59 16 20 H 0.25 16.31 8.73 -92.71 -0.81 15.51 16 21 H 0.04 1.97 4.80 -2.39 -0.01 1.96 16 22 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.03 1.68 7.63 -2.39 -0.02 1.66 16 24 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 26 H 0.04 1.14 8.04 -2.39 -0.02 1.12 16 27 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.05 1.25 8.04 -2.39 -0.02 1.24 16 29 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.05 2.30 6.52 -2.39 -0.02 2.29 16 Total: -1.00 -65.35 239.68 2.21 -63.13 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 0.89 Total: 7.66 kcal Atomic # 6 Polarization: -40.04 SS G_CDS: 2.57 Total: -37.46 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -3.06 Total: -86.35 kcal Atomic # 14 Polarization: 51.22 SS G_CDS: 1.81 Total: 53.03 kcal Total: -65.35 2.21 -63.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259575892.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.755 kcal (2) G-P(sol) polarization free energy of solvation -65.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds